Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031560 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.4e-226 789.3 399 100.0
CSS0025326 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 8.7e-184 647.1 383 89.3
CSS0037716 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 6.5e-179 630.9 401 85.0
CSS0034194 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.1e-178 630.2 401 84.0
CSS0020440 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.3e-176 623.2 372 88.4
CSS0043256 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.2e-171 605.9 383 84.6
CSS0008548 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.5e-167 592.4 414 78.0
CSS0040633 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.0e-160 568.9 399 77.9
CSS0003173 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.0e-159 566.2 416 74.8
Actinidia28645 Actinidia chinensis HOM05D004724 ORTHO05D005734 2.4e-157 559.3 415 71.3
CSS0030883 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.6e-153 546.6 405 74.6
Lj6A780T47 Lonicera japonica HOM05D004724 ORTHO05D005734 1.0e-152 543.9 417 68.8
GSVIVG01012211001 Vitis vinifera HOM05D004724 ORTHO05D005734 3.2e-146 522.3 415 66.0
Hma1.2p1_0354F.1_g133420 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 4.2e-146 521.9 415 67.2
QL03p072107 Quercus lobata HOM05D004724 ORTHO05D005734 2.2e-142 509.6 413 65.4
QL03p072513 Quercus lobata HOM05D004724 ORTHO05D005734 2.2e-142 509.6 413 65.1
Nn4g23396 Nelumbo nucifera HOM05D004724 ORTHO05D005734 1.1e-141 507.3 410 65.4
CiPaw.05G125900 Carya illinoinensis HOM05D004724 ORTHO05D005734 1.8e-141 506.5 412 64.8
Nn3g17424 Nelumbo nucifera HOM05D004724 ORTHO05D005734 3.1e-141 505.8 412 64.8
Migut.E00049 Erythranthe guttata HOM05D004724 ORTHO05D005734 3.8e-139 498.8 417 62.1
Dinv34076 Davidia involucrata HOM05D004724 ORTHO05D005734 1.1e-138 497.3 377 70.3
Dinv15029 Davidia involucrata HOM05D004724 ORTHO05D005734 1.5e-138 496.9 366 71.9
Sc04g0007630 Simmondsia chinensis HOM05D004724 ORTHO05D005734 4.2e-138 495.4 415 62.9
HanXRQChr08g0211831 Helianthus annuus HOM05D004724 ORTHO05D005734 1.2e-137 493.8 417 62.4
MSTRG.13448 Avicennia marina HOM05D004724 ORTHO05D005734 3.6e-137 492.3 417 63.3
vmacro16381 Vaccinium macrocarpon HOM05D004724 ORTHO05D005734 1.4e-136 490.3 510 55.5
MD13G1063400 Malus domestica HOM05D004724 ORTHO05D005734 2.0e-135 486.5 414 63.3
THA.LOC104822013 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 2.0e-135 486.5 412 61.7
Eucgr.B03160 Eucalyptus grandis HOM05D004724 ORTHO05D005734 2.6e-135 486.1 414 63.3
PGR102G0250 Punica granatum HOM05D004724 ORTHO05D005734 3.4e-135 485.7 414 61.4
MD16G1061800 Malus domestica HOM05D004724 ORTHO05D005734 1.3e-134 483.8 414 63.8
Thecc.02G332500 Theobroma cacao HOM05D004724 ORTHO05D005734 1.3e-134 483.8 413 62.5
TWI31G1115 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 1.3e-134 483.8 413 62.2
TWI79G1393 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 1.1e-133 480.7 412 62.4
TAR622G0524 Trochodendron aralioides HOM05D004724 ORTHO05D005734 3.8e-131 472.2 412 62.4
Gorai.005G145100 Gossypium raimondii HOM05D004724 ORTHO05D005734 4.2e-130 468.8 413 61.0
Gohir.D02G129300 Gossypium hirsutum HOM05D004724 ORTHO05D005734 9.4e-130 467.6 413 60.8
Gohir.A03G104200 Gossypium hirsutum HOM05D004724 ORTHO05D005734 2.1e-129 466.5 414 61.4
RcHm_v2.0_Chr4g0438491 Rosa chinensis HOM05D004724 ORTHO05D005734 1.4e-128 463.8 415 59.0
Lalb_Chr10g0098781 Lupinus albus HOM05D004724 ORTHO05D005734 1.8e-128 463.4 414 59.9
TAR374G1337 Trochodendron aralioides HOM05D004724 ORTHO05D005734 1.8e-128 463.4 412 61.7
MBI16_g13587_MAGBIO Magnolia biondii HOM05D004724 ORTHO05D005734 3.0e-128 462.6 412 60.9
Nitab4.5_0004171g0040 Nicotiana tabacum HOM05D004724 ORTHO05D005734 2.0e-127 459.9 426 57.3
Oeu048146.1 Olea europaea HOM05D004724 ORTHO05D005734 2.0e-127 459.9 417 60.7
Nitab4.5_0000231g0420 Nicotiana tabacum HOM05D004724 ORTHO05D005734 3.4e-127 459.1 419 57.5
Aa31LG7G8630 Aethionema arabicum HOM05D004724 ORTHO05D005734 3.7e-126 455.7 409 58.7
Rhsim12G0135900 Rhododendron simsii HOM05D004724 ORTHO05D005734 8.3e-126 454.5 368 66.8
PGSC0003DMG400028320 Solanum tuberosum HOM05D004724 ORTHO05D005734 3.1e-125 452.6 426 55.6
CARHR025500 Cardamine hirsuta HOM05D004724 ORTHO05D005734 9.1e-125 451.1 413 58.4
MELO3C011422.2 Cucumis melo HOM05D004724 ORTHO05D005734 2.0e-124 449.9 412 58.3
Sopen05g007210 Solanum pennellii HOM05D004724 ORTHO05D005734 2.0e-124 449.9 426 55.2
Atru.chr11.1649 Acer truncatum HOM05D004724 ORTHO05D005734 7.7e-124 448.0 415 58.3
Glyma.01G058200 Glycine max HOM05D004724 ORTHO05D005734 1.0e-123 447.6 415 57.6
Lj2g0005374 Lotus japonicus HOM05D004724 ORTHO05D005734 1.3e-123 447.2 414 56.8
Peaxi162Scf00175g00020 Petunia axillaris HOM05D004724 ORTHO05D005734 1.3e-123 447.2 427 55.5
SalBow2G3108 Salvia bowleyana HOM05D004724 ORTHO05D005734 1.3e-123 447.2 427 55.7
CsaV3_6G033660 Cucumis sativus L. HOM05D004724 ORTHO05D005734 2.9e-123 446.0 412 57.8
Cfa008886 Carpinus fangiana HOM05D004724 ORTHO05D005734 3.8e-123 445.7 413 58.6
PSO017G2003 Papaver somniferum HOM05D004724 ORTHO05D005734 5.0e-123 445.3 412 57.0
AT1G26460 Arabidopsis thaliana HOM05D004724 ORTHO05D005734 6.6e-123 444.9 419 56.8
Lsat_1_v5_gn_8_47681 Lactuca sativa HOM05D004724 ORTHO05D005734 6.6e-123 444.9 373 62.5
PSO478G4140 Papaver somniferum HOM05D004724 ORTHO05D005734 1.5e-122 443.7 412 56.8
Manes.01G028400 Manihot esculenta HOM05D004724 ORTHO05D005734 1.9e-122 443.4 414 56.0
CAN.G616.33 Capsicum annuum HOM05D004724 ORTHO05D005734 2.5e-122 443.0 428 54.2
AUR62007926 Chenopodium quinoa HOM05D004724 ORTHO05D005734 4.2e-122 442.2 413 58.8
Glyma.02G116000 Glycine max HOM05D004724 ORTHO05D005734 7.2e-122 441.4 411 57.4
AUR62003111 Chenopodium quinoa HOM05D004724 ORTHO05D005734 9.5e-122 441.0 413 58.4
TPR.G24471 Trifolium pratense HOM05D004724 ORTHO05D005734 2.1e-121 439.9 414 57.2
ECA233G5398 Erigeron canadensis HOM05D004724 ORTHO05D005734 3.6e-121 439.1 375 60.3
BolC5t31188H Brassica oleracea HOM05D004724 ORTHO05D005734 1.0e-120 437.6 415 56.1
Ca_04959_v3 Cicer arietinum L. HOM05D004724 ORTHO05D005734 1.8e-120 436.8 414 57.7
Potri.010G159100 Populus trichocarpa HOM05D004724 ORTHO05D005734 2.3e-120 436.4 418 57.7
Ciclev10031249m.g Citrus clementina HOM05D004724 ORTHO05D005734 8.9e-120 434.5 414 57.2
FvH4_4g30160 Fragaria vesca HOM05D004724 ORTHO05D005734 4.4e-119 432.2 416 56.5
SalBow8G1172 Salvia bowleyana HOM05D004724 ORTHO05D005734 1.3e-118 430.6 454 52.2
Haze_11916 Corylus avellana HOM05D004724 ORTHO05D005734 2.2e-118 429.9 412 57.3
EL10Ac6g14982 Beta vulgaris HOM05D004724 ORTHO05D005734 6.4e-118 428.3 414 56.5
Prupe.1G286100 Prunus persica HOM05D004724 ORTHO05D005734 6.4e-118 428.3 414 56.0
ClCG08G010390 Citrullus lanatus HOM05D004724 ORTHO05D005734 1.1e-117 427.6 412 55.6
Sed0014019 Sechium edule HOM05D004724 ORTHO05D005734 5.4e-117 425.2 413 55.9
Cc11_g12080 Coffea canephora HOM05D004724 ORTHO05D005734 1.6e-116 423.7 417 54.4
CANSAT64G0483 Cannabis sativa HOM05D004724 ORTHO05D005734 3.5e-116 422.5 419 55.4
THA.LOC104805036 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 5.9e-116 421.8 412 54.6
AL1G39280 Arabidopsis lyrata HOM05D004724 ORTHO05D005734 7.8e-116 421.4 419 54.9
Carub.0001s2456 Capsella rubella HOM05D004724 ORTHO05D005734 1.7e-115 420.2 419 54.7
Medtr5g044270 Medicago truncatula HOM05D004724 ORTHO05D005734 1.7e-115 420.2 414 54.3
SGA_v2.0_scaffold16G07777 Striga asiatica HOM05D004724 ORTHO05D005734 2.5e-114 416.4 417 54.9
BraA09t39487Z Brassica rapa HOM05D004724 ORTHO05D005734 4.3e-114 415.6 415 53.5
Thhalv10007071m.g Eutrema salsugineum HOM05D004724 ORTHO05D005734 5.6e-114 415.2 415 55.4
A09p39880 Brassica napus HOM05D004724 ORTHO05D005734 7.3e-114 414.8 415 53.5
C05p24540 Brassica napus HOM05D004724 ORTHO05D005734 7.3e-114 414.8 415 53.7
COL.COLO4_27896 Corchorus olitorius HOM05D004724 ORTHO05D005734 7.3e-114 414.8 412 55.3
ATR0064G103 Amborella trichopoda HOM05D004724 ORTHO05D005734 2.1e-113 413.3 373 58.7
DCAR_027471 Daucus carota HOM05D004724 ORTHO05D005734 2.1e-113 413.3 424 53.3
FAN12G2645 Fragaria x ananassa HOM05D004724 ORTHO05D005734 1.4e-112 410.6 416 54.8
FAN22G1297 Fragaria x ananassa HOM05D004724 ORTHO05D005734 1.4e-112 410.6 422 53.8
Migut.L01196 Erythranthe guttata HOM05D004724 ORTHO05D005734 3.5e-108 396.0 417 53.5
Sabra10G0120800 Salix brachista HOM05D004724 ORTHO05D005734 7.8e-108 394.8 418 53.1
HPP92_009526 Vanilla planifolia HOM05D004724 ORTHO05D005734 2.1e-105 386.7 440 50.2
HPP92_009555 Vanilla planifolia HOM05D004724 ORTHO05D005734 1.1e-104 384.4 440 50.0
arahy.Tifrunner.gnm1.ann1.06XI8G Arachis hypogaea HOM05D004724 ORTHO05D005734 2.3e-104 383.3 414 52.4
arahy.Tifrunner.gnm1.ann1.CTA0UQ Arachis hypogaea HOM05D004724 ORTHO05D005734 4.0e-104 382.5 413 52.5
FAN07G2095 Fragaria x ananassa HOM05D004724 ORTHO05D005734 2.9e-102 376.3 422 50.9
Phvul.003G043100 Phaseolus vulgaris HOM05D004724 ORTHO05D005734 3.2e-101 372.9 415 51.1
Hund25184 Selenicereus undatus HOM05D004724 ORTHO05D005734 4.6e-100 369.0 380 53.7
CiPaw.06G092100 Carya illinoinensis HOM05D004724 ORTHO05D005734 1.3e-99 367.5 402 53.2
FAN17G2607 Fragaria x ananassa HOM05D004724 ORTHO05D005734 6.6e-99 365.2 432 49.3
Os07g0599000 Oryza sativa ssp. japonica HOM05D004724 ORTHO05D005734 1.2e-97 360.9 367 52.6
CDE04G2698 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 1.6e-97 360.5 432 47.2
Zm00001eb108470 Zea mays HOM05D004724 ORTHO05D005734 3.1e-96 356.3 371 50.4
Aqoxy3G03611 Aquilegia oxysepala HOM05D004724 ORTHO05D005734 1.2e-95 354.4 374 51.9
Psat2g129640 Pisum sativum HOM05D004724 ORTHO05D005734 3.4e-95 352.8 312 60.6
Zm00001eb326730 Zea mays HOM05D004724 ORTHO05D005734 1.4e-93 347.4 366 50.0
Solyc05g012390.4 Solanum lycopersicum HOM05D004724 ORTHO05D005734 2.4e-93 346.7 325 55.1
DCAR_027465 Daucus carota HOM05D004724 ORTHO05D005734 2.1e-89 333.6 338 54.1
SGA_v2.0_scaffold287G47167 Striga asiatica HOM05D004724 ORTHO05D005734 1.5e-87 327.4 312 57.7
VMungo1215G0095 Vigna mungo HOM05D004724 ORTHO05D005734 2.2e-86 323.6 415 47.0
SHI32884 Sapria himalayana HOM05D004724 ORTHO05D005734 7.9e-68 261.9 250 54.8
Cpa.g.sc1.117 Carica papaya HOM05D004724 ORTHO05D005734 2.1e-60 237.3 206 62.1
GSVIVG01028487001 Vitis vinifera HOM05D004724 ORTHO05D005734 7.9e-60 235.3 226 56.2
EL10Ac5g12464 Beta vulgaris HOM05D004724 ORTHO05D005734 6.7e-59 232.3 255 51.0
SEGI_02789 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 6.7e-59 232.3 236 51.7
GSVIVG01021735001 Vitis vinifera HOM05D004724 ORTHO05D005734 1.5e-58 231.1 226 56.2
Ah.02g126900 Amaranthus hybridus HOM05D004724 ORTHO05D005734 1.1e-50 204.9 235 48.9
Mapoly0002s0313 Marchantia polymorpha HOM05D004724 ORTHO05D005734 1.1e-50 204.9 373 34.0
AagrBONN_evm.TU.Sc2ySwM_117.2858 Anthoceros agrestis HOM05D004724 ORTHO05D005734 1.3e-49 201.4 363 33.9
CDE07G1937 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 3.6e-44 183.3 249 43.0
SHI32782 Sapria himalayana HOM05D004724 ORTHO05D005734 1.1e-42 178.3 418 31.8
SHI32882 Sapria himalayana HOM05D004724 ORTHO05D005734 4.2e-37 159.8 174 52.3
Actinidia32302 Actinidia chinensis HOM05D004724 ORTHO05D005734 2.2e-33 147.5 113 68.1
Pp3c14_20030 Physcomitrium patens HOM05D004724 ORTHO05D005734 2.8e-33 147.1 376 29.0
Pp3c1_28760 Physcomitrium patens HOM05D004724 ORTHO05D005734 4.8e-33 146.4 363 27.3
GSVIVG01009940001 Vitis vinifera HOM05D004724 ORTHO05D005734 9.1e-32 142.1 98 68.4
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 8.5e-30 135.6 109 65.1
CBR_g55790 Chara braunii HOM05D004724 ORTHO05D005734 3.6e-28 130.2 289 28.7
Nitab4.5_0011966g0020 Nicotiana tabacum HOM05D004724 ORTHO05D005734 9.7e-26 122.1 126 52.4
Actinidia32301 Actinidia chinensis HOM05D004724 ORTHO05D005734 2.4e-24 117.5 89 65.2
Medtr6g024415 Medicago truncatula HOM05D004724 ORTHO05D005734 6.5e-22 109.4 108 54.6
Ah.02g126910 Amaranthus hybridus HOM05D004724 ORTHO05D005734 4.0e-19 100.1 107 49.5
CDE07G0543 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 5.5e-13 79.7 69 56.5
C07p19370 Brassica napus HOM05D004724 ORTHO05D005734 7.2e-13 79.3 85 47.1
SEGI_03319 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 9.5e-13 79.0 96 41.7
A07p12930 Brassica napus HOM05D004724 ORTHO05D005734 8.3e-09 65.9 68 50.0
BraA07t29066Z Brassica rapa HOM05D004724 ORTHO05D005734 8.3e-09 65.9 68 50.0
Gohir.D12G165066 Gossypium hirsutum HOM05D004724 ORTHO05D005734 5.4e-08 63.2 55 54.5
BolC7t42456H Brassica oleracea HOM05D004724 ORTHO05D005734 9.2e-08 62.4 68 48.5
Nn4g24499 Nelumbo nucifera HOM05D000723 ORTHO05D278618 8.6e-06 55.8 93 36.6


User provided reference genes

Program Settings