Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031533 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 8.1e-34 146.4 67 100.0
CSS0029764 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 1.0e-28 129.4 62 95.2
CSS0025530 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 6.2e-26 120.2 61 88.5
CSS0027848 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 1.4e-25 119.0 61 85.2
CSS0030768 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 1.8e-25 118.6 61 86.9
CSS0047969 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 6.9e-25 116.7 61 86.9
CSS0021083 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 9.0e-25 116.3 59 86.4
Lj4g0008619 Lotus japonicus HOM05D005927 ORTHO05D006952 1.5e-24 115.5 61 82.0
COL.COLO4_05438 Corchorus olitorius HOM05D005927 ORTHO05D006952 5.8e-24 113.6 61 83.6
FvH4_4g13190 Fragaria vesca HOM05D005927 ORTHO05D006952 5.8e-24 113.6 61 82.0
FAN12G2699 Fragaria x ananassa HOM05D005927 ORTHO05D006952 5.8e-24 113.6 61 82.0
MD04G1018100 Malus domestica HOM05D005927 ORTHO05D006952 9.9e-24 112.8 61 82.0
Gohir.A10G129100 Gossypium hirsutum HOM05D005927 ORTHO05D006952 2.9e-23 111.3 61 80.3
Gohir.D10G137100 Gossypium hirsutum HOM05D005927 ORTHO05D006952 2.9e-23 111.3 61 80.3
Gorai.011G152200 Gossypium raimondii HOM05D005927 ORTHO05D006952 2.9e-23 111.3 61 80.3
Rhsim09G0061200 Rhododendron simsii HOM05D005927 ORTHO05D006952 3.8e-23 110.9 61 82.0
FAN17G1175 Fragaria x ananassa HOM05D005927 ORTHO05D006952 4.9e-23 110.5 61 80.3
FAN07G0035 Fragaria x ananassa HOM05D005927 ORTHO05D006952 8.4e-23 109.8 61 78.7
Prupe.1G167100 Prunus persica HOM05D005927 ORTHO05D006952 1.9e-22 108.6 61 80.3
Ca_17999_v3 Cicer arietinum L. HOM05D000324 ORTHO05D004875 2.4e-22 108.2 61 77.0
RcHm_v2.0_Chr4g0413341 Rosa chinensis HOM05D005927 ORTHO05D006952 3.2e-22 107.8 61 78.7
Thecc.04G193700 Theobroma cacao HOM05D005927 ORTHO05D006952 4.2e-22 107.5 61 78.7
VMungo0251G3792 Vigna mungo HOM05D005927 ORTHO05D006952 4.2e-22 107.5 61 77.0
Lalb_Chr25g0289221 Lupinus albus HOM05D005927 ORTHO05D006952 9.3e-22 106.3 63 79.4
Phvul.003G051400 Phaseolus vulgaris HOM05D005927 ORTHO05D006952 1.6e-21 105.5 61 75.4
Glyma.08G108200 Glycine max HOM05D005927 ORTHO05D006952 2.1e-21 105.1 62 79.0
Cpa.g.sc157.40 Carica papaya HOM05D005927 ORTHO05D006952 2.7e-21 104.8 61 77.0
TPR.G11873 Trifolium pratense HOM05D005927 ORTHO05D006952 2.7e-21 104.8 61 73.8
DCAR_026663 Daucus carota HOM05D005927 ORTHO05D006952 3.5e-21 104.4 60 78.3
Glyma.05G151400 Glycine max HOM05D005927 ORTHO05D006952 4.6e-21 104.0 62 77.4
arahy.Tifrunner.gnm1.ann1.6R0Q3T Arachis hypogaea HOM05D005927 ORTHO05D006952 6.0e-21 103.6 61 75.4
Medtr8g083150 Medicago truncatula HOM05D005927 ORTHO05D006952 6.0e-21 103.6 57 75.4
TWI09G0897 Tripterygium wilfordii HOM05D005927 ORTHO05D006952 2.3e-20 101.7 57 80.7
Psat7g076040 Pisum sativum HOM05D005927 ORTHO05D006952 5.1e-20 100.5 57 73.7
Solyc09g092235.1 Solanum lycopersicum HOM05D005927 ORTHO05D006952 1.1e-19 99.4 62 74.2
arahy.Tifrunner.gnm1.ann1.N45PRE Arachis hypogaea HOM05D005927 ORTHO05D006952 1.5e-19 99.0 61 75.4
QL06p026881 Quercus lobata HOM05D005927 ORTHO05D006952 1.5e-19 99.0 60 73.3
Sopen09g035160 Solanum pennellii HOM05D005927 ORTHO05D006952 1.5e-19 99.0 62 74.2
SalBow3G2584 Salvia bowleyana HOM05D005927 ORTHO05D006952 1.9e-19 98.6 61 70.5
Manes.05G201886 Manihot esculenta HOM05D005927 ORTHO05D006952 2.5e-19 98.2 60 73.3
Lsat_1_v5_gn_2_47681 Lactuca sativa HOM05D005927 ORTHO05D006952 4.3e-19 97.4 57 71.9
Sabra17G0053700 Salix brachista HOM05D005927 ORTHO05D006952 4.3e-19 97.4 62 74.2
PGSC0003DMG400026439 Solanum tuberosum HOM05D005927 ORTHO05D006952 4.3e-19 97.4 60 75.0
CANSAT78G2028 Cannabis sativa HOM05D005927 ORTHO05D006952 2.1e-18 95.1 59 67.8
SGA_v2.0_scaffold7G04055 Striga asiatica HOM05D005927 ORTHO05D006952 2.1e-18 95.1 62 67.7
Hma1.2p1_1201F.1_g266720 Hydrangea macrophylla HOM05D005927 ORTHO05D006952 3.6e-18 94.4 59 72.9
ECA238G2825 Erigeron canadensis HOM05D005927 ORTHO05D006952 6.2e-18 93.6 56 67.9
Eucgr.H02655 Eucalyptus grandis HOM05D005927 ORTHO05D006952 6.2e-18 93.6 61 68.9
arahy.Tifrunner.gnm1.ann1.DI9ALX Arachis hypogaea HOM05D005927 ORTHO05D006952 1.4e-17 92.4 61 73.8
Ciclev10006252m.g Citrus clementina HOM05D005927 ORTHO05D006952 1.4e-17 92.4 62 69.4
Potri.017G059800 Populus trichocarpa HOM05D005927 ORTHO05D006952 1.8e-17 92.0 62 71.0
MSTRG.14058 Avicennia marina HOM05D005927 ORTHO05D006952 3.1e-17 91.3 62 64.5
Migut.N00426 Erythranthe guttata HOM05D005927 ORTHO05D006952 9.0e-17 89.7 68 61.8
Cfa010561 Carpinus fangiana HOM05D003411 ORTHO05D003914 1.5e-16 89.0 61 67.2
PGR083G0422 Punica granatum HOM05D005927 ORTHO05D006952 2.6e-16 88.2 62 64.5
PGR083G1024 Punica granatum HOM05D005927 ORTHO05D006952 2.6e-16 88.2 62 64.5
Sed0010469 Sechium edule HOM05D005927 ORTHO05D006952 2.6e-16 88.2 62 66.1
Haze_11664 Corylus avellana HOM05D005927 ORTHO05D006952 5.8e-16 87.0 61 67.2
Potri.001G321300 Populus trichocarpa HOM05D005927 ORTHO05D006952 9.9e-16 86.3 64 65.6
CiPaw.01G115600 Carya illinoinensis HOM05D005927 ORTHO05D006952 1.3e-15 85.9 58 65.5
MELO3C006773.2 Cucumis melo HOM05D005927 ORTHO05D006952 1.3e-15 85.9 62 61.3
Cfa008638 Carpinus fangiana HOM05D005927 ORTHO05D006952 1.7e-15 85.5 61 65.6
Hma1.2p1_2624F.1_g325620 Hydrangea macrophylla HOM05D005927 ORTHO05D006952 1.7e-15 85.5 60 66.7
Nitab4.5_0019370g0010 Nicotiana tabacum HOM05D005927 ORTHO05D006952 1.7e-15 85.5 58 72.4
Hma1.2p1_0349F.1_g131980 Hydrangea macrophylla HOM05D005927 ORTHO05D006952 3.8e-15 84.3 60 66.7
Ah.13g077890 Amaranthus hybridus HOM05D005927 ORTHO05D006952 4.9e-15 84.0 61 63.9
CSS0000209 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 4.9e-15 84.0 60 65.0
Hma1.2p1_0349F.1_g132010 Hydrangea macrophylla HOM05D005927 ORTHO05D006952 4.9e-15 84.0 57 68.4
Hma1.2p1_2624F.1_g325626 Hydrangea macrophylla HOM05D005927 ORTHO05D006952 4.9e-15 84.0 57 68.4
AUR62020874 Chenopodium quinoa HOM05D005927 ORTHO05D006952 6.4e-15 83.6 67 58.2
CSS0010844 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 8.4e-15 83.2 60 65.0
CSS0015614 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 1.1e-14 82.8 60 65.0
CsaV3_3G015740 Cucumis sativus L. HOM05D005927 ORTHO05D006952 1.1e-14 82.8 62 58.1
PGR083G0017 Punica granatum HOM05D005927 ORTHO05D006952 1.1e-14 82.8 62 59.7
AUR62018545 Chenopodium quinoa HOM05D005927 ORTHO05D006952 1.9e-14 82.0 61 62.3
CiPaw.02G064100 Carya illinoinensis HOM05D005927 ORTHO05D006952 4.2e-14 80.9 57 64.9
Oeu056432.1 Olea europaea HOM05D005927 ORTHO05D006952 5.5e-14 80.5 58 60.3
A04p08120 Brassica napus HOM05D005927 ORTHO05D006952 7.1e-14 80.1 67 56.7
BraA04t16501Z Brassica rapa HOM05D005927 ORTHO05D006952 7.1e-14 80.1 67 56.7
THA.LOC104804793 Tarenaya hassleriana HOM05D005927 ORTHO05D006952 7.1e-14 80.1 66 60.6
Carub.0007s2841 Capsella rubella HOM05D005927 ORTHO05D006952 1.2e-13 79.3 67 56.7
CiPaw.02G063500 Carya illinoinensis HOM05D005927 ORTHO05D006952 1.2e-13 79.3 57 64.9
Duzib151G0391 Durio zibethinus HOM05D005927 ORTHO05D006952 1.2e-13 79.3 55 63.6
EL10Ac3g07444 Beta vulgaris HOM05D005927 ORTHO05D006952 1.6e-13 79.0 62 59.7
BcaC02g09370 Brassica carinata HOM05D005927 ORTHO05D006952 1.6e-13 79.0 67 56.7
C04p41800 Brassica napus HOM05D005927 ORTHO05D006952 1.6e-13 79.0 67 56.7
BolC4t25761H Brassica oleracea HOM05D005927 ORTHO05D006952 1.6e-13 79.0 67 56.7
Sp7g11810 Schrenkiella parvula HOM05D005927 ORTHO05D006952 7.9e-13 76.6 67 53.7
AL7G42420 Arabidopsis lyrata HOM05D005927 ORTHO05D006952 1.3e-12 75.9 67 55.2
AT4G14010 Arabidopsis thaliana HOM05D005927 ORTHO05D006952 1.3e-12 75.9 67 55.2
BcaB02g08639 Brassica carinata HOM05D005927 ORTHO05D006952 1.3e-12 75.9 67 53.7
Thhalv10026595m.g Eutrema salsugineum HOM05D005927 ORTHO05D006952 1.3e-12 75.9 67 55.2
Aqoxy2G03917 Aquilegia oxysepala HOM05D005927 ORTHO05D006952 1.8e-12 75.5 61 55.7
DCAR_001205 Daucus carota HOM05D001053 ORTHO05D008021 1.8e-12 75.5 64 54.7
Aa31LG9G3330 Aethionema arabicum HOM05D005927 ORTHO05D006952 2.3e-12 75.1 61 55.7
Ciclev10006262m.g Citrus clementina HOM05D005927 ORTHO05D006952 3.0e-12 74.7 63 54.0
A03p43360 Brassica napus HOM05D005927 ORTHO05D006952 8.7e-12 73.2 60 58.3
BraA03t13474Z Brassica rapa HOM05D005927 ORTHO05D006952 1.1e-11 72.8 60 58.3
CSS0014727 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 1.1e-11 72.8 55 60.0
Aa31LG8G10360 Aethionema arabicum HOM05D005927 ORTHO05D006952 1.9e-11 72.0 62 51.6
CSS0046414 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 1.9e-11 72.0 58 63.8
BcaB03g14615 Brassica carinata HOM05D005927 ORTHO05D006952 2.5e-11 71.6 60 56.7
Manes.05G202960 Manihot esculenta HOM05D005927 ORTHO05D006952 4.3e-11 70.9 60 55.0
Atru.chr4.1553 Acer truncatum HOM05D005927 ORTHO05D006952 5.6e-11 70.5 64 51.6
Prupe.1G167200 Prunus persica HOM05D005927 ORTHO05D006952 1.6e-10 68.9 60 55.0
Nn1g08157 Nelumbo nucifera HOM05D005927 ORTHO05D006952 2.4e-09 65.1 60 58.3
Sp3g21500 Schrenkiella parvula HOM05D005927 ORTHO05D006952 2.4e-09 65.1 66 50.0
Thecc.04G193600 Theobroma cacao HOM05D005927 ORTHO05D006952 2.4e-09 65.1 58 55.2
Potri.001G321500 Populus trichocarpa HOM05D005927 ORTHO05D006952 4.0e-09 64.3 57 50.9
COL.COLO4_05437 Corchorus olitorius HOM05D005927 ORTHO05D006952 1.5e-08 62.4 58 56.9
unitig_21.g20554 Utricularia gibba HOM05D005927 ORTHO05D006952 4.5e-08 60.8 63 46.0
Potri.017G059900 Populus trichocarpa HOM05D005927 ORTHO05D006952 5.8e-08 60.5 57 50.9
Sed0016502 Sechium edule HOM05D005927 ORTHO05D006952 1.9e-06 55.5 59 47.5
Eucgr.K03354 Eucalyptus grandis HOM05D000668 ORTHO05D000516 2.5e-06 55.1 59 47.5
Haze_22049 Corylus avellana HOM05D005927 ORTHO05D006952 3.2e-06 54.7 52 51.9


User provided reference genes

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