Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031508 Camellia sinensis var. sinensis HOM05D006199 ORTHO05D006558 4.9e-91 337.8 174 100.0
Rhsim11G0191800 Rhododendron simsii HOM05D006199 ORTHO05D006558 4.4e-55 218.4 173 71.1
QL11p050170 Quercus lobata HOM05D006199 ORTHO05D006558 7.7e-52 207.6 173 63.0
Cfa005236 Carpinus fangiana HOM05D006199 ORTHO05D006558 7.4e-47 191.0 176 60.8
FvH4_2g01260 Fragaria vesca HOM05D006199 ORTHO05D006558 3.7e-46 188.7 177 57.6
FAN24G2717 Fragaria x ananassa HOM05D006199 ORTHO05D006558 6.3e-46 188.0 177 59.9
Potri.009G134500 Populus trichocarpa HOM05D006199 ORTHO05D006558 8.2e-46 187.6 173 58.4
Sabra09G0104300 Salix brachista HOM05D006199 ORTHO05D006558 1.1e-45 187.2 173 58.4
CiPaw.05G081500 Carya illinoinensis HOM05D006199 ORTHO05D006558 3.1e-45 185.7 176 58.5
Aqoxy6G02177 Aquilegia oxysepala HOM05D006199 ORTHO05D006558 4.1e-45 185.3 171 59.1
Actinidia00620 Actinidia chinensis HOM05D006199 ORTHO05D006558 2.6e-44 182.6 136 73.5
Manes.04G075600 Manihot esculenta HOM05D006199 ORTHO05D006558 4.5e-44 181.8 175 57.1
FAN20G1063 Fragaria x ananassa HOM05D006199 ORTHO05D006558 2.2e-43 179.5 177 57.6
Lj5A179T83 Lonicera japonica HOM05D006199 ORTHO05D006558 2.2e-43 179.5 177 58.8
RcHm_v2.0_Chr6g0251921 Rosa chinensis HOM05D006199 ORTHO05D006558 3.8e-43 178.7 177 57.6
Sc18g0006460 Simmondsia chinensis HOM05D006199 ORTHO05D006558 3.2e-42 175.6 172 57.0
Nn5g30772 Nelumbo nucifera HOM05D006199 ORTHO05D006558 9.4e-42 174.1 176 55.1
TAR628G1195 Trochodendron aralioides HOM05D006199 ORTHO05D006558 1.6e-41 173.3 172 60.5
CANSAT25G2535 Cannabis sativa HOM05D006199 ORTHO05D006558 2.7e-41 172.6 176 55.1
TWI75G1548 Tripterygium wilfordii HOM05D006199 ORTHO05D006558 8.8e-40 167.5 173 56.1
Prupe.8G164900 Prunus persica HOM05D006199 ORTHO05D006558 1.5e-39 166.8 175 57.1
MD10G1095100 Malus domestica HOM05D006199 ORTHO05D006558 2.6e-39 166.0 173 55.5
Ah.01g022950 Amaranthus hybridus HOM05D006199 ORTHO05D006558 3.3e-39 165.6 174 51.7
Medtr3g117880 Medicago truncatula HOM05D006199 ORTHO05D006558 4.4e-39 165.2 178 53.9
Lj1g0009253 Lotus japonicus HOM05D006199 ORTHO05D006558 1.3e-38 163.7 178 55.1
Glyma.04G003800 Glycine max HOM05D006199 ORTHO05D006558 1.7e-38 163.3 178 55.6
Eucgr.I01413 Eucalyptus grandis HOM05D006199 ORTHO05D006558 2.8e-38 162.5 176 53.4
Ca_15302_v3 Cicer arietinum L. HOM05D006199 ORTHO05D006558 3.7e-38 162.2 177 56.5
Solyc01g111550.3 Solanum lycopersicum HOM05D006199 ORTHO05D006558 4.8e-38 161.8 177 51.4
EL10Ac9g21386 Beta vulgaris HOM05D006199 ORTHO05D006558 1.1e-37 160.6 172 51.7
Psat5g002720 Pisum sativum HOM05D006199 ORTHO05D006558 1.1e-37 160.6 178 52.2
Dinv41943 Davidia involucrata HOM05D006199 ORTHO05D006558 1.4e-37 160.2 97 79.4
Sopen01g053590 Solanum pennellii HOM05D006199 ORTHO05D006558 1.4e-37 160.2 177 51.4
Atru.chr5.3311 Acer truncatum HOM05D006199 ORTHO05D006558 1.8e-37 159.8 175 54.9
Peaxi162Scf00362g00651 Petunia axillaris HOM05D006199 ORTHO05D006558 1.8e-37 159.8 176 50.6
TPR.G38477 Trifolium pratense HOM05D006199 ORTHO05D006558 1.8e-37 159.8 178 54.5
GSVIVG01024030001 Vitis vinifera HOM05D006199 ORTHO05D006558 3.1e-37 159.1 97 75.3
Nitab4.5_0006645g0060 Nicotiana tabacum HOM05D006199 ORTHO05D006558 7.0e-37 157.9 178 53.4
Phvul.009G119500 Phaseolus vulgaris HOM05D006199 ORTHO05D006558 7.0e-37 157.9 175 53.7
Lalb_Chr23g0265011 Lupinus albus HOM05D006199 ORTHO05D006558 1.6e-36 156.8 178 53.4
Gorai.002G197400 Gossypium raimondii HOM05D006199 ORTHO05D006558 2.0e-36 156.4 149 56.4
Haze_02147 Corylus avellana HOM05D006199 ORTHO05D006558 2.7e-36 156.0 151 60.3
PGR142G1980 Punica granatum HOM05D006199 ORTHO05D006558 3.5e-36 155.6 185 50.8
ClCG02G011890 Citrullus lanatus HOM05D006199 ORTHO05D006558 7.7e-36 154.5 179 55.3
Actinidia20510 Actinidia chinensis HOM05D006199 ORTHO05D006558 1.0e-35 154.1 137 62.0
Nitab4.5_0005853g0010 Nicotiana tabacum HOM05D006199 ORTHO05D006558 1.3e-35 153.7 185 51.4
CsaV3_2G016060 Cucumis sativus L. HOM05D006199 ORTHO05D006558 1.7e-35 153.3 174 54.0
MELO3C020815.2 Cucumis melo HOM05D006199 ORTHO05D006558 2.9e-35 152.5 174 54.0
Gohir.A01G168100 Gossypium hirsutum HOM05D006199 ORTHO05D006558 2.9e-35 152.5 149 55.0
CAN.G588.74 Capsicum annuum HOM05D006199 ORTHO05D006558 5.0e-35 151.8 177 49.7
Duzib132G0247 Durio zibethinus HOM05D006199 ORTHO05D006558 5.0e-35 151.8 154 53.9
VMungo1309G0102 Vigna mungo HOM05D006199 ORTHO05D006558 5.0e-35 151.8 179 53.1
arahy.Tifrunner.gnm1.ann1.H9ZTXG Arachis hypogaea HOM05D006199 ORTHO05D006558 6.5e-35 151.4 179 53.1
AUR62013038 Chenopodium quinoa HOM05D006199 ORTHO05D006558 6.5e-35 151.4 174 48.9
Thecc.02G060900 Theobroma cacao HOM05D006199 ORTHO05D006558 6.5e-35 151.4 150 56.7
Sed0003263 Sechium edule HOM05D006199 ORTHO05D006558 8.5e-35 151.0 177 53.1
MBI08_g14630_MAGBIO Magnolia biondii HOM05D006199 ORTHO05D006558 1.1e-34 150.6 173 50.9
FAN27G0272 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.5e-34 150.2 172 52.3
MSTRG.19995 Avicennia marina HOM05D006199 ORTHO05D006558 5.5e-34 148.3 174 50.0
HanXRQChr10g0300911 Helianthus annuus HOM05D006199 ORTHO05D006558 9.4e-34 147.5 175 53.7
ECA234G0878 Erigeron canadensis HOM05D006199 ORTHO05D006558 4.7e-33 145.2 176 54.5
Ciclev10028644m.g Citrus clementina HOM05D006199 ORTHO05D006558 1.2e-31 140.6 174 51.1
SalBow1G2578 Salvia bowleyana HOM05D006199 ORTHO05D006558 1.5e-31 140.2 173 48.6
Cc02_g16220 Coffea canephora HOM05D006199 ORTHO05D006558 4.4e-31 138.7 97 70.1
PSO675G4200 Papaver somniferum HOM05D006199 ORTHO05D006558 4.4e-31 138.7 184 47.3
Lsat_1_v5_gn_4_71580 Lactuca sativa HOM05D006199 ORTHO05D006558 2.8e-30 136.0 177 48.0
PSO541G4917 Papaver somniferum HOM05D006199 ORTHO05D006558 1.1e-29 134.0 188 45.2
SGA_v2.0_scaffold58G20372 Striga asiatica HOM05D006199 ORTHO05D006558 1.6e-28 130.2 160 48.1
Sp4g00170 Schrenkiella parvula HOM05D006199 ORTHO05D006558 1.7e-27 126.7 172 45.9
A03p27410 Brassica napus HOM05D006199 ORTHO05D006558 2.3e-27 126.3 172 45.3
BraA03t11952Z Brassica rapa HOM05D006199 ORTHO05D006558 2.3e-27 126.3 172 45.3
BcaC01g04861 Brassica carinata HOM05D006199 ORTHO05D006558 5.0e-27 125.2 172 44.8
C03p33040 Brassica napus HOM05D006199 ORTHO05D006558 5.0e-27 125.2 172 44.8
BolC3t15631H Brassica oleracea HOM05D006199 ORTHO05D006558 6.5e-27 124.8 172 44.8
Thhalv10000193m.g Eutrema salsugineum HOM05D006199 ORTHO05D006558 6.5e-27 124.8 172 45.3
SHI05731 Sapria himalayana HOM05D006199 ORTHO05D006558 1.1e-26 124.0 119 51.3
Migut.B00085 Erythranthe guttata HOM05D006199 ORTHO05D006558 1.5e-26 123.6 172 43.0
ATR0078G008 Amborella trichopoda HOM05D006199 ORTHO05D006558 3.3e-26 122.5 177 44.6
AT2G20980 Arabidopsis thaliana HOM05D006199 ORTHO05D006558 1.2e-25 120.6 171 44.4
AL4G10110 Arabidopsis lyrata HOM05D006199 ORTHO05D006558 1.6e-25 120.2 106 56.6
HPP92_008341 Vanilla planifolia HOM05D006199 ORTHO05D006558 2.8e-25 119.4 171 43.3
COL.COLO4_17328 Corchorus olitorius HOM05D006199 ORTHO05D006558 6.1e-25 118.2 114 57.0
arahy.Tifrunner.gnm1.ann1.WS10KT Arachis hypogaea HOM05D006199 ORTHO05D006558 8.0e-25 117.9 179 46.4
CiPaw.06G122500 Carya illinoinensis HOM05D006199 ORTHO05D006558 1.4e-24 117.1 94 63.8
FvH4_3g06660 Fragaria vesca HOM05D006199 ORTHO05D006558 1.5e-23 113.6 75 72.0
FAN11G3400 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.5e-23 113.6 75 72.0
THA.LOC104807811 Tarenaya hassleriana HOM05D006199 ORTHO05D006558 1.5e-23 113.6 172 44.2
CARHR111860 Cardamine hirsuta HOM05D006199 ORTHO05D006558 4.4e-23 112.1 175 41.7
Carub.0004s0005 Capsella rubella HOM05D006199 ORTHO05D006558 5.7e-23 111.7 106 52.8
BcaB07g29803 Brassica carinata HOM05D006199 ORTHO05D006558 3.7e-22 109.0 174 40.2
Os09g0539400 Oryza sativa ssp. japonica HOM05D006199 ORTHO05D006558 4.9e-22 108.6 183 38.8
Gohir.D01G159100 Gossypium hirsutum HOM05D006199 ORTHO05D006558 1.4e-21 107.1 74 67.6
AUR62010046 Chenopodium quinoa HOM05D006199 ORTHO05D006558 2.4e-21 106.3 146 44.5
PGSC0003DMG400006190 Solanum tuberosum HOM05D006199 ORTHO05D006558 2.7e-20 102.8 174 39.7
DCAR_022808 Daucus carota HOM05D006199 ORTHO05D006558 4.5e-20 102.1 173 41.6
FvH4_5g37420 Fragaria vesca HOM05D006199 ORTHO05D006558 1.3e-19 100.5 74 67.6
BcaB01g02961 Brassica carinata HOM05D006199 ORTHO05D006558 8.6e-19 97.8 148 42.6
Aa31LG7G15660 Aethionema arabicum HOM05D006199 ORTHO05D006558 2.1e-17 93.2 165 38.2
Hund00025 Selenicereus undatus HOM05D006199 ORTHO05D006558 1.1e-13 80.9 172 37.2
Zm00001eb331950 Zea mays HOM05D006199 ORTHO05D006558 9.2e-13 77.8 74 48.6
vmacro02274 Vaccinium macrocarpon HOM05D006199 ORTHO05D006558 1.2e-12 77.4 179 34.6
HanXRQChr15g0479941 Helianthus annuus HOM05D006199 ORTHO05D006558 1.7e-11 73.6 78 50.0
Duzib248G0391 Durio zibethinus HOM05D006199 ORTHO05D006558 1.9e-10 70.1 59 55.9
RcHm_v2.0_Chr5g0048301 Rosa chinensis HOM05D006199 ORTHO05D006558 4.7e-09 65.5 46 63.0
Pp3c15_24300 Physcomitrium patens HOM05D006199 ORTHO05D006558 8.9e-08 61.2 173 29.5


User provided reference genes

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