Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031486 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 1.4e-66 256.1 125 100.0
CSS0003853 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 9.8e-41 170.2 91 91.2
CSS0039228 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 6.3e-40 167.5 91 89.0
Rhsim08G0097500 Rhododendron simsii HOM05D005516 ORTHO05D006713 2.1e-35 152.5 87 85.1
vmacro08774 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 3.6e-35 151.8 86 86.0
Hma1.2p1_0526F.1_g172920 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 6.1e-35 151.0 90 82.2
Dinv13791 Davidia involucrata HOM05D005516 ORTHO05D006713 1.8e-34 149.4 88 81.8
Gorai.013G196100 Gossypium raimondii HOM05D005516 ORTHO05D006713 1.5e-33 146.4 89 79.8
Hma1.2p1_0526F.1_g172910 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 2.6e-33 145.6 86 82.6
vmacro04358 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 7.5e-33 144.1 87 80.5
Actinidia06205 Actinidia chinensis HOM05D005516 ORTHO05D006713 1.7e-32 142.9 84 84.5
Cfa017721 Carpinus fangiana HOM05D005516 ORTHO05D006713 2.2e-32 142.5 88 79.5
vmacro18891 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 2.2e-32 142.5 87 79.3
PGSC0003DMG400028211 Solanum tuberosum HOM05D005516 ORTHO05D006713 3.7e-32 141.7 88 75.0
COL.COLO4_20092 Corchorus olitorius HOM05D005516 ORTHO05D006713 4.9e-32 141.4 87 79.3
GSVIVG01029962001 Vitis vinifera HOM05D005516 ORTHO05D006713 6.3e-32 141.0 85 83.5
CAN.G128.137 Capsicum annuum HOM05D005516 ORTHO05D006713 8.3e-32 140.6 88 73.9
arahy.Tifrunner.gnm1.ann1.BMR428 Arachis hypogaea HOM05D005516 ORTHO05D006713 1.1e-31 140.2 80 82.5
Oeu044207.1 Olea europaea HOM05D005516 ORTHO05D006713 1.4e-31 139.8 94 76.6
Nitab4.5_0000613g0140 Nicotiana tabacum HOM05D005516 ORTHO05D006713 2.4e-31 139.0 85 76.5
ClCG04G004680 Citrullus lanatus HOM05D005516 ORTHO05D006713 3.1e-31 138.7 84 78.6
Duzib106G1703 Durio zibethinus HOM05D005516 ORTHO05D006713 3.1e-31 138.7 88 76.1
Glyma.16G035800 Glycine max HOM05D005516 ORTHO05D006713 3.1e-31 138.7 82 80.5
PSO339G3932 Papaver somniferum HOM05D005516 ORTHO05D006713 3.1e-31 138.7 87 75.9
Atru.chr2.1522 Acer truncatum HOM05D005516 ORTHO05D006713 7.0e-31 137.5 85 78.8
Sopen10g031880 Solanum pennellii HOM05D005516 ORTHO05D006713 7.0e-31 137.5 88 73.9
CiPaw.09G166400 Carya illinoinensis HOM05D005516 ORTHO05D006713 1.2e-30 136.7 85 77.6
Ca_08316_v3 Cicer arietinum L. HOM05D005516 ORTHO05D006713 1.2e-30 136.7 80 81.2
Lalb_Chr14g0364851 Lupinus albus HOM05D005516 ORTHO05D006713 1.2e-30 136.7 85 77.6
Solyc10g081380.2 Solanum lycopersicum HOM05D005516 ORTHO05D006713 1.6e-30 136.3 88 72.7
TPR.G34794 Trifolium pratense HOM05D005516 ORTHO05D006713 1.6e-30 136.3 81 80.2
Eucgr.K01534 Eucalyptus grandis HOM05D005516 ORTHO05D006713 2.0e-30 136.0 85 76.5
Hma1.2p1_0106F.1_g051205 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 2.0e-30 136.0 88 75.0
Peaxi162Scf00575g00619 Petunia axillaris HOM05D005516 ORTHO05D006713 4.5e-30 134.8 88 71.6
Thecc.05G241500 Theobroma cacao HOM05D005516 ORTHO05D006713 4.5e-30 134.8 84 79.8
Cc06_g21500 Coffea canephora HOM05D005516 ORTHO05D006713 5.9e-30 134.4 86 74.4
Haze_20402 Corylus avellana HOM05D005516 ORTHO05D006713 5.9e-30 134.4 86 77.9
CARHR195330 Cardamine hirsuta HOM05D005516 ORTHO05D006713 7.8e-30 134.0 90 72.2
Phvul.001G105600 Phaseolus vulgaris HOM05D005516 ORTHO05D006713 7.8e-30 134.0 86 76.7
Manes.08G152800 Manihot esculenta HOM05D005516 ORTHO05D006713 1.0e-29 133.7 85 76.5
VMungo1383G1686 Vigna mungo HOM05D005516 ORTHO05D006713 1.0e-29 133.7 86 76.7
MELO3C008865.2 Cucumis melo HOM05D005516 ORTHO05D006713 1.3e-29 133.3 88 75.0
Nitab4.5_0000811g0010 Nicotiana tabacum HOM05D005516 ORTHO05D006713 1.3e-29 133.3 80 77.5
Psat3g086560 Pisum sativum HOM05D005516 ORTHO05D006713 1.3e-29 133.3 80 77.5
QL07p017420 Quercus lobata HOM05D005516 ORTHO05D006713 1.3e-29 133.3 85 77.6
CsaV3_4G031610 Cucumis sativus L. HOM05D005516 ORTHO05D006713 1.7e-29 132.9 81 80.2
DCAR_020653 Daucus carota HOM05D005516 ORTHO05D006713 1.7e-29 132.9 83 78.3
Duzib128G1828 Durio zibethinus HOM05D005516 ORTHO05D006713 1.7e-29 132.9 84 77.4
PSO384G4582 Papaver somniferum HOM05D005516 ORTHO05D006713 1.7e-29 132.9 87 73.6
CANSAT78G1214 Cannabis sativa HOM05D005516 ORTHO05D006713 2.9e-29 132.1 80 77.5
Sabra13G0057700 Salix brachista HOM05D005516 ORTHO05D006713 2.9e-29 132.1 83 78.3
DCAR_016961 Daucus carota HOM05D005516 ORTHO05D006713 5.0e-29 131.3 89 71.9
THA.LOC104820795 Tarenaya hassleriana HOM05D005516 ORTHO05D006713 5.0e-29 131.3 89 71.9
Lj1g0004780 Lotus japonicus HOM05D005516 ORTHO05D006713 6.6e-29 131.0 78 80.8
Potri.019G040400 Populus trichocarpa HOM05D005516 ORTHO05D006713 8.6e-29 130.6 82 76.8
BcaB01g04919 Brassica carinata HOM05D005516 ORTHO05D006713 1.1e-28 130.2 89 69.7
Duzib177G0157 Durio zibethinus HOM05D005516 ORTHO05D006713 1.1e-28 130.2 84 76.2
Sed0005064 Sechium edule HOM05D005516 ORTHO05D006713 1.1e-28 130.2 81 76.5
FAN19G1175 Fragaria x ananassa HOM05D005516 ORTHO05D006713 1.5e-28 129.8 81 76.5
Hund20711 Selenicereus undatus HOM05D005516 ORTHO05D006713 1.5e-28 129.8 74 79.7
TWI60G0181 Tripterygium wilfordii HOM05D005516 ORTHO05D006713 1.5e-28 129.8 82 78.0
arahy.Tifrunner.gnm1.ann1.253MNK Arachis hypogaea HOM05D005516 ORTHO05D006713 1.9e-28 129.4 77 80.5
FAN26G2397 Fragaria x ananassa HOM05D005516 ORTHO05D006713 2.5e-28 129.0 80 77.5
AL6G28930 Arabidopsis lyrata HOM05D005516 ORTHO05D006713 3.3e-28 128.6 89 67.4
FAN23G0165 Fragaria x ananassa HOM05D005516 ORTHO05D006713 3.3e-28 128.6 80 76.2
Gorai.004G252300 Gossypium raimondii HOM05D005516 ORTHO05D006713 3.3e-28 128.6 85 74.1
Sp6g26410 Schrenkiella parvula HOM05D005516 ORTHO05D006713 3.3e-28 128.6 89 68.5
Carub.0006s1607 Capsella rubella HOM05D005516 ORTHO05D006713 4.3e-28 128.3 87 69.0
Nitab4.5_0000404g0040 Nicotiana tabacum HOM05D005516 ORTHO05D006713 4.3e-28 128.3 94 67.0
TWI32G0326 Tripterygium wilfordii HOM05D005516 ORTHO05D006713 4.3e-28 128.3 83 75.9
Ciclev10022543m.g Citrus clementina HOM05D005516 ORTHO05D006713 5.6e-28 127.9 85 76.5
FvH4_1g29880 Fragaria vesca HOM05D005516 ORTHO05D006713 5.6e-28 127.9 80 76.2
Glyma.19G117300 Glycine max HOM05D005516 ORTHO05D006713 5.6e-28 127.9 77 79.2
Potri.013G066000 Populus trichocarpa HOM05D005516 ORTHO05D006713 7.3e-28 127.5 82 76.8
RcHm_v2.0_Chr3g0496031 Rosa chinensis HOM05D005516 ORTHO05D006713 7.3e-28 127.5 80 78.8
MD12G1011900 Malus domestica HOM05D005516 ORTHO05D006713 9.5e-28 127.1 83 73.5
SGA_v2.0_scaffold69G23215 Striga asiatica HOM05D000039 ORTHO05D000370 9.5e-28 127.1 85 72.9
Sc07g0007460 Simmondsia chinensis HOM05D005516 ORTHO05D006713 1.2e-27 126.7 85 71.8
AT5G17840 Arabidopsis thaliana HOM05D005516 ORTHO05D006713 1.6e-27 126.3 87 67.8
CDE07G0498 Ceratophyllum demersum HOM05D005516 ORTHO05D006713 2.1e-27 125.9 80 73.8
Medtr7g086700 Medicago truncatula HOM05D005516 ORTHO05D006713 2.1e-27 125.9 74 81.1
Thhalv10014907m.g Eutrema salsugineum HOM05D005516 ORTHO05D006713 3.6e-27 125.2 87 69.0
MBI05_g16554_MAGBIO Magnolia biondii HOM05D005516 ORTHO05D006713 3.6e-27 125.2 85 69.4
MD14G1009500 Malus domestica HOM05D005516 ORTHO05D006713 3.6e-27 125.2 80 72.5
Prupe.7G015800 Prunus persica HOM05D005516 ORTHO05D006713 3.6e-27 125.2 80 73.8
Gohir.A08G219566 Gossypium hirsutum HOM05D005516 ORTHO05D006713 4.7e-27 124.8 84 72.6
HanXRQChr13g0406451 Helianthus annuus HOM05D005516 ORTHO05D006713 4.7e-27 124.8 83 71.1
Zm00001eb052720 Zea mays HOM05D005516 ORTHO05D006713 4.7e-27 124.8 83 71.1
MSTRG.6254 Avicennia marina HOM05D005516 ORTHO05D006713 6.1e-27 124.4 73 80.8
Hund20712 Selenicereus undatus HOM05D005516 ORTHO05D006713 6.1e-27 124.4 74 78.4
C02p25840 Brassica napus HOM05D005516 ORTHO05D006713 8.0e-27 124.0 90 66.7
ECA248G2342 Erigeron canadensis HOM05D005516 ORTHO05D006713 1.0e-26 123.6 84 70.2
Lsat_1_v5_gn_5_154420 Lactuca sativa HOM05D005516 ORTHO05D006713 1.0e-26 123.6 84 70.2
BcaB01g05159 Brassica carinata HOM05D005516 ORTHO05D006713 1.4e-26 123.2 87 66.7
A03p08520 Brassica napus HOM05D005516 ORTHO05D006713 1.4e-26 123.2 87 67.8
C03p09930 Brassica napus HOM05D005516 ORTHO05D006713 1.4e-26 123.2 87 66.7
BolC3t13481H Brassica oleracea HOM05D005516 ORTHO05D006713 1.4e-26 123.2 87 66.7
BraA03t10176Z Brassica rapa HOM05D005516 ORTHO05D006713 1.4e-26 123.2 87 66.7
SGA_v2.0_scaffold66G22373 Striga asiatica HOM05D005516 ORTHO05D006713 1.4e-26 123.2 91 68.1
Cpa.g.sc161.38 Carica papaya HOM05D005516 ORTHO05D006713 2.3e-26 122.5 84 70.2
Aa31LG11G11740 Aethionema arabicum HOM05D005516 ORTHO05D006713 3.0e-26 122.1 89 64.0
HPP92_000977 Vanilla planifolia HOM05D005516 ORTHO05D006713 1.2e-25 120.2 85 67.1
Ah.13g074870 Amaranthus hybridus HOM05D005516 ORTHO05D006713 1.5e-25 119.8 93 64.5
HPP92_001001 Vanilla planifolia HOM05D005516 ORTHO05D006713 2.6e-25 119.0 85 65.9
AUR62018088 Chenopodium quinoa HOM05D005516 ORTHO05D006713 4.4e-25 118.2 95 62.1
SEGI_32239 Sequoiadendron giganteum HOM05D005516 ORTHO05D006713 1.3e-24 116.7 77 70.1
AUR62032011 Chenopodium quinoa HOM05D005516 ORTHO05D006713 2.2e-24 115.9 74 71.6
Gohir.A13G161100 Gossypium hirsutum HOM05D005516 ORTHO05D006713 3.7e-24 115.2 84 69.0
Gohir.D13G166400 Gossypium hirsutum HOM05D005516 ORTHO05D006713 3.7e-24 115.2 84 69.0
EL10Ac3g06621 Beta vulgaris HOM05D005516 ORTHO05D006713 1.1e-23 113.6 80 70.0
Zm00001eb218270 Zea mays HOM05D005516 ORTHO05D006713 2.4e-23 112.5 81 64.2
unitig_0.g583 Utricularia gibba HOM05D005516 ORTHO05D006713 3.2e-23 112.1 78 73.1
Os03g0656201 Oryza sativa ssp. japonica HOM05D005516 ORTHO05D006713 5.4e-23 111.3 78 67.9
MSTRG.26204 Avicennia marina HOM05D005516 ORTHO05D006713 7.0e-23 110.9 83 65.1
Lalb_Chr24g0401101 Lupinus albus HOM05D005516 ORTHO05D006713 8.6e-21 104.0 62 80.6
BcaB05g23282 Brassica carinata HOM05D005516 ORTHO05D006713 5.6e-20 101.3 89 61.8
Aqoxy1G00508 Aquilegia oxysepala HOM05D005516 ORTHO05D006713 9.5e-20 100.5 87 60.9
Pp3c8_890 Physcomitrium patens HOM05D005516 ORTHO05D006713 9.5e-20 100.5 72 68.1
Peaxi162Scf00575g00620 Petunia axillaris HOM05D005516 ORTHO05D006713 1.4e-18 96.7 74 63.5
Actinidia07963 Actinidia chinensis HOM05D005516 ORTHO05D006713 2.3e-18 95.9 63 74.6
Mapoly0020s0169 Marchantia polymorpha HOM05D005516 ORTHO05D006713 4.0e-18 95.1 78 59.0
SalBow6G3354 Salvia bowleyana HOM05D005516 ORTHO05D006713 3.7e-16 88.6 56 73.2
Oeu029775.1 Olea europaea HOM05D005516 ORTHO05D006713 2.4e-15 85.9 64 67.2
Gohir.D02G044500 Gossypium hirsutum HOM05D005516 ORTHO05D006713 9.2e-15 84.0 61 63.9
Ciclev10013836m.g Citrus clementina HOM05D005516 ORTHO05D006713 2.1e-14 82.8 59 67.8
Sed0000674 Sechium edule HOM05D005516 ORTHO05D006713 6.0e-14 81.3 100 50.0
Gohir.A06G040900 Gossypium hirsutum HOM05D005516 ORTHO05D006713 1.0e-13 80.5 59 64.4
Gohir.D05G109301 Gossypium hirsutum HOM05D005516 ORTHO05D006713 1.0e-13 80.5 59 64.4
BcaC03g15036 Brassica carinata HOM05D005516 ORTHO05D006713 1.3e-13 80.1 64 59.4
BolC2t08658H Brassica oleracea HOM05D005516 ORTHO05D006713 1.3e-13 80.1 64 59.4
TAR633G1766 Trochodendron aralioides HOM05D005516 ORTHO05D006713 1.1e-12 77.0 45 80.0
CBR_g28089 Chara braunii HOM05D005516 ORTHO05D006713 1.5e-09 66.6 46 63.0
SMO367G1142 Selaginella moellendorffii HOM05D005516 ORTHO05D006713 1.1e-07 60.5 38 71.1
Nn6g32378 Nelumbo nucifera HOM05D005516 ORTHO05D006713 2.4e-07 59.3 43 67.4


User provided reference genes

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