Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031478 Camellia sinensis var. sinensis HOM05D005473 ORTHO05D006543 5.2e-196 687.6 355 100.0
vmacro01424 Vaccinium macrocarpon HOM05D005473 ORTHO05D006543 2.7e-152 542.3 370 78.1
Dinv04903 Davidia involucrata HOM05D005473 ORTHO05D006543 1.7e-151 539.7 365 78.4
Rhsim12G0088500 Rhododendron simsii HOM05D005473 ORTHO05D006543 8.6e-151 537.3 427 68.4
Hma1.2p1_0114F.1_g055460 Hydrangea macrophylla HOM05D005473 ORTHO05D006543 2.6e-139 499.2 362 73.5
QL01p003042 Quercus lobata HOM05D005473 ORTHO05D006543 1.0e-135 487.3 364 70.6
MSTRG.875 Avicennia marina HOM05D005473 ORTHO05D006543 1.1e-134 483.8 365 70.7
TAR622G1045 Trochodendron aralioides HOM05D005473 ORTHO05D006543 1.9e-134 483.0 362 68.5
Actinidia31990 Actinidia chinensis HOM05D005473 ORTHO05D006543 2.1e-133 479.6 321 79.4
GSVIVG01011804001 Vitis vinifera HOM05D005473 ORTHO05D006543 3.4e-131 472.2 365 68.8
Prupe.1G320100 Prunus persica HOM05D005473 ORTHO05D006543 6.4e-130 468.0 347 68.3
CiPaw.05G245400 Carya illinoinensis HOM05D005473 ORTHO05D006543 1.4e-129 466.8 367 68.9
Lj3A877T94 Lonicera japonica HOM05D005473 ORTHO05D006543 9.3e-129 464.2 410 62.7
SalBow8G1667 Salvia bowleyana HOM05D005473 ORTHO05D006543 2.1e-128 463.0 365 67.1
Dinv16166 Davidia involucrata HOM05D005473 ORTHO05D006543 7.9e-128 461.1 357 70.0
Cfa015813 Carpinus fangiana HOM05D000048 ORTHO05D000207 1.8e-127 459.9 365 66.8
RcHm_v2.0_Chr4g0434011 Rosa chinensis HOM05D005473 ORTHO05D006543 5.1e-127 458.4 339 69.6
Manes.14G109600 Manihot esculenta HOM05D005473 ORTHO05D006543 4.3e-126 455.3 366 65.8
Sopen05g004360 Solanum pennellii HOM05D005473 ORTHO05D006543 1.3e-125 453.8 360 67.5
PGSC0003DMG400030516 Solanum tuberosum HOM05D005473 ORTHO05D006543 1.3e-125 453.8 360 67.2
FAN17G2750 Fragaria x ananassa HOM05D005473 ORTHO05D006543 1.6e-125 453.4 343 67.3
Solyc05g008520.3 Solanum lycopersicum HOM05D005473 ORTHO05D006543 1.6e-125 453.4 360 67.2
FAN22G1873 Fragaria x ananassa HOM05D005473 ORTHO05D006543 3.7e-125 452.2 343 67.6
Oeu059511.2 Olea europaea HOM05D005473 ORTHO05D006543 4.8e-125 451.8 348 68.4
Sabra08G0095200 Salix brachista HOM05D005473 ORTHO05D006543 1.4e-124 450.3 358 65.1
FvH4_4g26380 Fragaria vesca HOM05D005473 ORTHO05D006543 2.4e-124 449.5 343 67.3
FAN12G0751 Fragaria x ananassa HOM05D005473 ORTHO05D006543 3.1e-124 449.1 343 67.1
FAN12G1468 Fragaria x ananassa HOM05D005473 ORTHO05D006543 3.1e-124 449.1 343 67.1
Nn4g24024 Nelumbo nucifera HOM05D005473 ORTHO05D006543 4.0e-124 448.7 364 64.0
Potri.008G126400 Populus trichocarpa HOM05D005473 ORTHO05D006543 4.0e-124 448.7 347 66.0
Cc11_g09260 Coffea canephora HOM05D005473 ORTHO05D006543 6.9e-124 448.0 361 65.7
CAN.G1489.13 Capsicum annuum HOM05D005473 ORTHO05D006543 1.5e-123 446.8 363 66.4
Thecc.02G215500 Theobroma cacao HOM05D005473 ORTHO05D006543 3.4e-123 445.7 367 64.0
Haze_00685 Corylus avellana HOM05D005473 ORTHO05D006543 7.6e-123 444.5 406 60.8
Sabra16G0274100 Salix brachista HOM05D005473 ORTHO05D006543 2.9e-122 442.6 358 64.2
Ciclev10015542m.g Citrus clementina HOM05D005473 ORTHO05D006543 6.4e-122 441.4 361 65.4
FAN07G2597 Fragaria x ananassa HOM05D005473 ORTHO05D006543 8.4e-122 441.0 343 66.2
Gohir.D05G319500 Gossypium hirsutum HOM05D005473 ORTHO05D006543 2.5e-121 439.5 366 63.1
Gorai.009G342800 Gossypium raimondii HOM05D005473 ORTHO05D006543 3.5e-120 435.6 367 63.2
Sed0015008 Sechium edule HOM05D005473 ORTHO05D006543 6.0e-120 434.9 363 64.2
Lsat_1_v5_gn_3_54040 Lactuca sativa HOM05D005473 ORTHO05D006543 1.3e-119 433.7 366 62.3
Gohir.A05G317600 Gossypium hirsutum HOM05D005473 ORTHO05D006543 3.0e-119 432.6 373 61.7
Atru.chr11.335 Acer truncatum HOM05D005473 ORTHO05D006543 6.7e-119 431.4 360 63.9
Sc11g0003970 Simmondsia chinensis HOM05D005473 ORTHO05D006543 6.7e-119 431.4 345 65.5
Migut.L01020 Erythranthe guttata HOM05D005473 ORTHO05D006543 4.3e-118 428.7 366 63.1
Lj5g0028089 Lotus japonicus HOM05D005473 ORTHO05D006543 1.3e-117 427.2 364 60.4
COL.COLO4_20121 Corchorus olitorius HOM05D005473 ORTHO05D006543 1.6e-117 426.8 365 61.9
arahy.Tifrunner.gnm1.ann1.45PR62 Arachis hypogaea HOM05D005473 ORTHO05D006543 3.7e-117 425.6 365 61.9
Phvul.007G034400 Phaseolus vulgaris HOM05D005473 ORTHO05D006543 1.4e-116 423.7 345 64.3
arahy.Tifrunner.gnm1.ann1.GULV0C Arachis hypogaea HOM05D005473 ORTHO05D006543 2.4e-116 422.9 365 61.6
VMungo0720G0454 Vigna mungo HOM05D005473 ORTHO05D006543 2.4e-116 422.9 344 63.7
Peaxi162Scf00205g01024 Petunia axillaris HOM05D000048 ORTHO05D006543 5.3e-116 421.8 337 67.1
ECA246G4292 Erigeron canadensis HOM05D005473 ORTHO05D006543 9.0e-116 421.0 369 61.8
Eucgr.K00649 Eucalyptus grandis HOM05D005473 ORTHO05D006543 2.6e-115 419.5 357 60.5
CsaV3_5G034770 Cucumis sativus L. HOM05D005473 ORTHO05D006543 4.5e-115 418.7 366 62.8
ClCG05G022330 Citrullus lanatus HOM05D005473 ORTHO05D006543 1.7e-114 416.8 366 63.4
HanXRQChr15g0477691 Helianthus annuus HOM05D005473 ORTHO05D006543 1.1e-113 414.1 363 60.1
Glyma.20G123200 Glycine max HOM05D005473 ORTHO05D006543 4.2e-113 412.1 345 63.5
Cpa.g.sc65.93 Carica papaya HOM05D005473 ORTHO05D006543 5.5e-113 411.8 354 61.6
Lalb_Chr06g0165731 Lupinus albus HOM05D005473 ORTHO05D006543 9.3e-113 411.0 357 60.8
Medtr1g109070 Medicago truncatula HOM05D005473 ORTHO05D006543 9.3e-113 411.0 338 63.0
AUR62037258 Chenopodium quinoa HOM05D005473 ORTHO05D006543 1.6e-112 410.2 337 61.7
SGA_v2.0_scaffold50G18546 Striga asiatica HOM05D005473 ORTHO05D006543 3.0e-111 406.0 356 58.4
AUR62002772 Chenopodium quinoa HOM05D005473 ORTHO05D006543 3.9e-111 405.6 337 60.8
Ca_30210_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 1.5e-110 403.7 343 61.2
TPR.G4908 Trifolium pratense HOM05D005473 ORTHO05D006543 1.5e-110 403.7 339 61.7
Atru.chr11.342 Acer truncatum HOM05D005473 ORTHO05D006543 1.9e-110 403.3 342 62.9
PGR119G2355 Punica granatum HOM05D005473 ORTHO05D006543 4.3e-110 402.1 365 58.9
Psat6g222680 Pisum sativum HOM05D005473 ORTHO05D006543 1.6e-109 400.2 338 62.1
Aqoxy5G03875 Aquilegia oxysepala HOM05D005473 ORTHO05D006543 5.9e-107 391.7 359 57.7
EL10Ac6g14276 Beta vulgaris HOM05D005473 ORTHO05D006543 1.0e-106 391.0 389 56.3
CARHR023350 Cardamine hirsuta HOM05D005473 ORTHO05D006543 4.2e-105 385.6 358 55.3
AL1G36530 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 1.2e-104 384.0 358 55.3
Nitab4.5_0013146g0010 Nicotiana tabacum HOM05D005473 ORTHO05D006543 1.2e-104 384.0 304 68.8
AT1G22970 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 2.7e-104 382.9 358 55.3
PSO017G4790 Papaver somniferum HOM05D005473 ORTHO05D006543 2.7e-104 382.9 361 57.3
MBI16_g29822_MAGBIO Magnolia biondii HOM05D005473 ORTHO05D006543 1.4e-103 380.6 369 55.0
CANSAT01G2653 Cannabis sativa HOM05D005473 ORTHO05D006543 2.3e-103 379.8 341 58.9
BraA09t39663Z Brassica rapa HOM05D005473 ORTHO05D006543 3.9e-103 379.0 358 54.5
DCAR_023622 Daucus carota HOM05D005473 ORTHO05D006543 3.9e-103 379.0 300 67.3
A09p41740 Brassica napus HOM05D005473 ORTHO05D006543 1.1e-102 377.5 358 54.2
Aa31LG7G6980 Aethionema arabicum HOM05D005473 ORTHO05D006543 1.3e-101 374.0 367 52.3
Carub.0001s2247 Capsella rubella HOM05D005473 ORTHO05D006543 1.7e-101 373.6 360 54.7
PSO782G5692 Papaver somniferum HOM05D005473 ORTHO05D006543 4.8e-101 372.1 364 55.8
Ah.03g138500 Amaranthus hybridus HOM05D005473 ORTHO05D006543 8.2e-101 371.3 365 54.2
Thhalv10008033m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 8.2e-101 371.3 358 53.6
C05p22180 Brassica napus HOM05D005473 ORTHO05D006543 1.2e-99 367.5 361 52.9
PSO478G0709 Papaver somniferum HOM05D005473 ORTHO05D006543 1.5e-99 367.1 365 55.6
BcaB07g32295 Brassica carinata HOM05D005473 ORTHO05D006543 4.5e-99 365.5 360 54.2
AL2G30760 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 1.6e-96 357.1 358 53.6
Potri.010G117100 Populus trichocarpa HOM05D005473 ORTHO05D006543 1.0e-95 354.4 298 63.4
BolC5t30918H Brassica oleracea HOM05D005473 ORTHO05D006543 1.1e-94 350.9 361 51.2
BcaC05g26209 Brassica carinata HOM05D005473 ORTHO05D006543 2.0e-94 350.1 361 51.2
Ca_23703_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 4.8e-93 345.5 343 54.5
AT1G71150 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 9.1e-92 341.3 358 52.5
BraA07t31315Z Brassica rapa HOM05D005473 ORTHO05D006543 9.1e-92 341.3 340 52.9
Sp1g20430 Schrenkiella parvula HOM05D005473 ORTHO05D006543 2.0e-91 340.1 358 51.4
Sp5g26320 Schrenkiella parvula HOM05D005473 ORTHO05D006543 2.0e-91 340.1 364 51.1
MELO3C012289.2 Cucumis melo HOM05D005473 ORTHO05D006543 2.6e-91 339.7 308 62.3
CARHR064450 Cardamine hirsuta HOM05D005473 ORTHO05D006543 5.5e-89 332.0 357 49.9
THA.LOC104812031 Tarenaya hassleriana HOM05D005473 ORTHO05D006543 3.9e-87 325.9 298 56.4
TWI79G1332 Tripterygium wilfordii HOM05D005473 ORTHO05D006543 5.2e-87 325.5 332 54.2
ATR0691G101 Amborella trichopoda HOM05D005473 ORTHO05D006543 1.7e-85 320.5 370 48.4
Carub.0002s1804 Capsella rubella HOM05D005473 ORTHO05D006543 1.7e-85 320.5 361 49.0
CDE07G0910 Ceratophyllum demersum HOM05D005473 ORTHO05D006543 8.2e-85 318.2 339 48.4
Duzib268G1740 Durio zibethinus HOM05D005473 ORTHO05D006543 5.3e-84 315.5 286 60.8
BcaC08g46554 Brassica carinata HOM05D005473 ORTHO05D006543 1.6e-83 313.9 339 49.6
Actinidia33629 Actinidia chinensis HOM05D005473 ORTHO05D006543 2.0e-83 313.5 241 71.4
BolC6t39580H Brassica oleracea HOM05D005473 ORTHO05D006543 1.1e-81 307.8 334 49.4
unitig_749.g14005 Utricularia gibba HOM05D005473 ORTHO05D006543 1.6e-80 303.9 282 59.9
BcaB03g14874 Brassica carinata HOM05D005473 ORTHO05D006543 1.8e-79 300.4 313 52.4
HPP92_020137 Vanilla planifolia HOM05D005473 ORTHO05D006543 2.8e-77 293.1 337 49.0
Rhsim03G0134600 Rhododendron simsii HOM05D005473 ORTHO05D006543 1.3e-74 284.3 238 68.1
Zm00001eb295130 Zea mays HOM05D005473 ORTHO05D006543 1.3e-74 284.3 375 43.5
Os05g0554500 Oryza sativa ssp. japonica HOM05D005473 ORTHO05D006543 2.7e-72 276.6 368 42.7
AT1G22980 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 4.4e-70 269.2 336 42.9
AL1G36540 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 4.1e-68 262.7 345 42.3
A07p37530 Brassica napus HOM05D000048 ORTHO05D006543 1.7e-66 257.3 338 42.9
Glyma.10G267900 Glycine max HOM05D005473 ORTHO05D006543 5.0e-66 255.8 227 60.4
Thecc.02G215400 Theobroma cacao HOM05D005473 ORTHO05D006543 3.3e-65 253.1 240 56.7
Migut.O00950 Erythranthe guttata HOM05D005473 ORTHO05D006543 8.9e-63 245.0 236 57.6
Thhalv10018995m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 8.9e-63 245.0 272 52.2
HanXRQChr15g0477701 Helianthus annuus HOM05D005473 ORTHO05D006543 9.8e-62 241.5 343 43.1
SEGI_09717 Sequoiadendron giganteum HOM05D005473 ORTHO05D006543 3.2e-60 236.5 336 39.3
A01p19890 Brassica napus HOM05D005473 ORTHO05D006543 1.2e-59 234.6 231 52.8
Duzib251G0055 Durio zibethinus HOM05D005473 ORTHO05D006543 1.7e-53 214.2 274 48.2
PSO384G2466 Papaver somniferum HOM05D005473 ORTHO05D006543 6.6e-50 202.2 300 41.3
SMO202G0044 Selaginella moellendorffii HOM05D005473 ORTHO05D006543 2.1e-43 180.6 336 35.1
Hund25017 Selenicereus undatus HOM05D005473 ORTHO05D006543 3.6e-40 169.9 129 65.1
AagrBONN_evm.TU.Sc2ySwM_344.5342 Anthoceros agrestis HOM05D005473 ORTHO05D006543 1.2e-38 164.9 352 32.1
Pp3c15_5840 Physcomitrium patens HOM05D005473 ORTHO05D006543 1.4e-36 157.9 449 27.8
C06p45250 Brassica napus HOM05D005473 ORTHO05D006543 5.1e-34 149.4 174 48.9
C06p45240 Brassica napus HOM05D000048 ORTHO05D000207 3.3e-33 146.7 129 53.5
PSO339G4228 Papaver somniferum HOM05D005473 ORTHO05D006543 3.6e-32 143.3 372 30.1
Oeu036129.1 Olea europaea HOM05D005473 ORTHO05D006543 4.4e-30 136.3 156 54.5
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 6.2e-24 115.9 163 39.9
MSTRG.15906 Avicennia marina HOM05D005473 ORTHO05D006543 4.0e-15 86.7 55 72.7
MD13G1032300 Malus domestica HOM05D005473 ORTHO05D006543 3.4e-14 83.6 56 71.4
MD16G1034500 Malus domestica HOM05D005473 ORTHO05D006543 7.6e-14 82.4 56 69.6
AagrBONN_evm.TU.Sc2ySwM_117.2697 Anthoceros agrestis HOM05D005473 ORTHO05D006543 1.3e-13 81.6 174 32.2
CAN.G572.16 Capsicum annuum HOM05D005473 ORTHO05D006543 4.9e-13 79.7 151 35.8


User provided reference genes

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