Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031477 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 2.8e-100 368.6 190 100.0
CSS0047755 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 2.0e-98 362.5 190 97.9
Actinidia06383 Actinidia chinensis HOM05D004068 ORTHO05D004700 3.0e-49 199.1 141 69.5
Actinidia21362 Actinidia chinensis HOM05D004068 ORTHO05D004700 2.4e-46 189.5 145 67.6
Rhsim13G0001400 Rhododendron simsii HOM05D004068 ORTHO05D004700 2.4e-46 189.5 180 57.2
Hma1.2p1_0484F.1_g162840 Hydrangea macrophylla HOM05D004068 ORTHO05D004700 6.9e-46 188.0 187 52.9
GSVIVG01028194001 Vitis vinifera HOM05D004068 ORTHO05D004700 4.9e-44 181.8 180 55.0
CSS0008406 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 4.2e-43 178.7 143 65.0
Manes.05G011200 Manihot esculenta HOM05D004068 ORTHO05D004700 4.2e-43 178.7 147 59.9
HanXRQChr16g0512461 Helianthus annuus HOM05D004068 ORTHO05D004700 7.1e-43 177.9 144 59.7
Prupe.3G006200 Prunus persica HOM05D004068 ORTHO05D004700 7.1e-43 177.9 91 85.7
COL.COLO4_23168 Corchorus olitorius HOM05D004068 ORTHO05D004700 1.6e-42 176.8 105 76.2
MSTRG.18070 Avicennia marina HOM05D004068 ORTHO05D004700 2.1e-42 176.4 117 70.9
Ciclev10022090m.g Citrus clementina HOM05D004068 ORTHO05D004700 2.1e-42 176.4 113 73.5
Cc01_g21940 Coffea canephora HOM05D004068 ORTHO05D004700 2.1e-42 176.4 112 73.2
Glyma.10G009700 Glycine max HOM05D004068 ORTHO05D004700 6.0e-42 174.9 115 71.3
Gohir.A11G106800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 6.0e-42 174.9 139 63.3
MD09G1287000 Malus domestica HOM05D004068 ORTHO05D004700 6.0e-42 174.9 93 81.7
PSO357G0073 Papaver somniferum HOM05D004068 ORTHO05D004700 6.0e-42 174.9 93 80.6
SalBow6G1478 Salvia bowleyana HOM05D004068 ORTHO05D004700 6.0e-42 174.9 120 71.7
Sc17g0000200 Simmondsia chinensis HOM05D004068 ORTHO05D004700 6.0e-42 174.9 107 74.8
Eucgr.H00894 Eucalyptus grandis HOM05D004068 ORTHO05D004700 7.9e-42 174.5 182 53.3
MBI19_g32706_MAGBIO Magnolia biondii HOM05D004068 ORTHO05D004700 7.9e-42 174.5 111 72.1
PSO170G5617 Papaver somniferum HOM05D004068 ORTHO05D004700 7.9e-42 174.5 109 72.5
Duzib138G0863 Durio zibethinus HOM05D004068 ORTHO05D004700 1.0e-41 174.1 105 74.3
MD17G1279300 Malus domestica HOM05D004068 ORTHO05D004700 1.0e-41 174.1 93 81.7
Peaxi162Scf00919g00026 Petunia axillaris HOM05D004068 ORTHO05D004700 1.0e-41 174.1 151 58.3
Nitab4.5_0004218g0050 Nicotiana tabacum HOM05D004068 ORTHO05D004700 1.8e-41 173.3 140 61.4
ECA236G4612 Erigeron canadensis HOM05D004068 ORTHO05D004700 2.3e-41 172.9 117 65.8
Nn3g21863 Nelumbo nucifera HOM05D004068 ORTHO05D004700 2.3e-41 172.9 140 60.0
QL12p034273 Quercus lobata HOM05D004068 ORTHO05D004700 2.3e-41 172.9 93 81.7
Gorai.007G119900 Gossypium raimondii HOM05D004068 ORTHO05D004700 3.0e-41 172.6 105 73.3
PGR083G2849 Punica granatum HOM05D004068 ORTHO05D004700 3.0e-41 172.6 102 76.5
Cfa004871 Carpinus fangiana HOM05D004068 ORTHO05D004700 5.1e-41 171.8 136 64.0
CiPaw.08G084800 Carya illinoinensis HOM05D004068 ORTHO05D004700 5.1e-41 171.8 148 59.5
Haze_05111 Corylus avellana HOM05D004068 ORTHO05D004700 6.7e-41 171.4 185 53.5
Duzib211G0484 Durio zibethinus HOM05D004068 ORTHO05D004700 6.7e-41 171.4 104 75.0
Glyma.02G009000 Glycine max HOM05D004068 ORTHO05D004700 6.7e-41 171.4 113 71.7
DCAR_018255 Daucus carota HOM05D004068 ORTHO05D004700 8.7e-41 171.0 148 58.8
Migut.D00035 Erythranthe guttata HOM05D004068 ORTHO05D004700 8.7e-41 171.0 125 64.8
Lalb_Chr06g0167051 Lupinus albus HOM05D004068 ORTHO05D004700 8.7e-41 171.0 91 82.4
CANSAT54G1466 Cannabis sativa HOM05D004068 ORTHO05D004700 1.1e-40 170.6 91 81.3
Thecc.01G321500 Theobroma cacao HOM05D004068 ORTHO05D004700 1.9e-40 169.9 148 59.5
CAN.G100.22 Capsicum annuum HOM05D004068 ORTHO05D004700 2.5e-40 169.5 91 81.3
Cpa.g.sc67.88 Carica papaya HOM05D004068 ORTHO05D004700 2.5e-40 169.5 144 59.0
FvH4_1g26710 Fragaria vesca HOM05D004068 ORTHO05D004700 2.5e-40 169.5 103 72.8
Gohir.D11G111800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 2.5e-40 169.5 90 80.0
RcHm_v2.0_Chr3g0486891 Rosa chinensis HOM05D004068 ORTHO05D004700 2.5e-40 169.5 103 73.8
TWI14G0788 Tripterygium wilfordii HOM05D004068 ORTHO05D004700 2.5e-40 169.5 122 66.4
SGA_v2.0_scaffold417G51268 Striga asiatica HOM05D004068 ORTHO05D004700 3.3e-40 169.1 158 53.8
FAN23G3049 Fragaria x ananassa HOM05D004068 ORTHO05D004700 7.4e-40 167.9 103 71.8
FAN28G2449 Fragaria x ananassa HOM05D004068 ORTHO05D004700 7.4e-40 167.9 103 71.8
Nitab4.5_0000222g0260 Nicotiana tabacum HOM05D004068 ORTHO05D004700 9.6e-40 167.5 146 58.2
Atru.chr5.916 Acer truncatum HOM05D004068 ORTHO05D004700 1.6e-39 166.8 91 80.2
FAN26G1054 Fragaria x ananassa HOM05D004068 ORTHO05D004700 2.1e-39 166.4 103 70.9
EL10As5g23587 Beta vulgaris HOM05D004068 ORTHO05D004700 2.8e-39 166.0 112 67.9
Sopen01g029940 Solanum pennellii HOM05D004068 ORTHO05D004700 2.8e-39 166.0 149 57.0
unitig_90.g27445 Utricularia gibba HOM05D004068 ORTHO05D004700 2.8e-39 166.0 90 80.0
Gohir.A07G130200 Gossypium hirsutum HOM05D004068 ORTHO05D004700 3.7e-39 165.6 105 71.4
Solyc01g068020.4 Solanum lycopersicum HOM05D004068 ORTHO05D004700 3.7e-39 165.6 149 57.0
Gorai.001G146300 Gossypium raimondii HOM05D004068 ORTHO05D004700 8.1e-39 164.5 105 70.5
PGSC0003DMG400005200 Solanum tuberosum HOM05D004068 ORTHO05D004700 1.1e-38 164.1 146 58.9
Sopen01g029950 Solanum pennellii HOM05D004068 ORTHO05D004700 1.4e-38 163.7 146 58.9
Solyc01g068030.3 Solanum lycopersicum HOM05D004068 ORTHO05D004700 1.8e-38 163.3 146 58.9
TAR633G0425 Trochodendron aralioides HOM05D004068 ORTHO05D004700 1.8e-38 163.3 102 70.6
Gohir.D07G134600 Gossypium hirsutum HOM05D004068 ORTHO05D004700 2.4e-38 162.9 105 69.5
Potri.002G190300 Populus trichocarpa HOM05D004068 ORTHO05D004700 2.4e-38 162.9 138 55.8
CiPaw.07G122600 Carya illinoinensis HOM05D004068 ORTHO05D004700 3.1e-38 162.5 109 66.1
FAN19G0978 Fragaria x ananassa HOM05D004068 ORTHO05D004700 3.1e-38 162.5 103 72.8
MELO3C023625.2 Cucumis melo HOM05D004068 ORTHO05D004700 4.0e-38 162.2 91 75.8
CsaV3_7G030310 Cucumis sativus L. HOM05D004068 ORTHO05D004700 4.0e-38 162.2 106 68.9
TAR636G1362 Trochodendron aralioides HOM05D004068 ORTHO05D004700 4.0e-38 162.2 102 72.5
Aa31LG1G10110 Aethionema arabicum HOM05D004068 ORTHO05D004700 1.2e-37 160.6 90 75.6
PGR083G1259 Punica granatum HOM05D004068 ORTHO05D004700 2.6e-37 159.5 102 70.6
Medtr1g086340 Medicago truncatula HOM05D004068 ORTHO05D004700 3.4e-37 159.1 94 76.6
Lsat_1_v5_gn_8_167400 Lactuca sativa HOM05D004068 ORTHO05D004700 4.5e-37 158.7 84 83.3
AL1G11820 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 7.6e-37 157.9 90 74.4
CARHR001800 Cardamine hirsuta HOM05D004068 ORTHO05D004700 7.6e-37 157.9 90 74.4
Aqoxy2G02578 Aquilegia oxysepala HOM05D004068 ORTHO05D004700 1.3e-36 157.1 86 81.4
A10p01270 Brassica napus HOM05D004068 ORTHO05D004700 1.3e-36 157.1 90 73.3
C05p01270 Brassica napus HOM05D004068 ORTHO05D004700 1.3e-36 157.1 90 73.3
Carub.0001s0155 Capsella rubella HOM05D004068 ORTHO05D004700 1.3e-36 157.1 90 73.3
AUR62011741 Chenopodium quinoa HOM05D004068 ORTHO05D004700 1.3e-36 157.1 96 74.0
Thhalv10008722m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.3e-36 157.1 90 74.4
AT1G02475 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 1.7e-36 156.8 90 73.3
HanXRQChr06g0168031 Helianthus annuus HOM05D004068 ORTHO05D004700 1.7e-36 156.8 90 71.1
AUR62024574 Chenopodium quinoa HOM05D004068 ORTHO05D004700 2.2e-36 156.4 95 72.6
Sp1g01550 Schrenkiella parvula HOM05D004068 ORTHO05D004700 2.2e-36 156.4 90 73.3
Sed0027961 Sechium edule HOM05D004068 ORTHO05D004700 2.2e-36 156.4 91 73.6
Potri.014G115400 Populus trichocarpa HOM05D004068 ORTHO05D004700 2.9e-36 156.0 100 68.0
BcaB03g15774 Brassica carinata HOM05D004068 ORTHO05D004700 3.8e-36 155.6 90 72.2
Zm00001eb131060 Zea mays HOM05D004068 ORTHO05D004700 6.5e-36 154.8 98 68.4
HPP92_010032 Vanilla planifolia HOM05D004068 ORTHO05D004700 8.4e-36 154.5 128 54.7
Sed0019105 Sechium edule HOM05D004068 ORTHO05D004700 1.4e-35 153.7 91 71.4
Thhalv10028926m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.9e-35 153.3 91 72.5
Thhalv10028927m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.9e-35 153.3 91 72.5
THA.LOC104801318 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 1.9e-35 153.3 97 72.2
ATR0693G403 Amborella trichopoda HOM05D004068 ORTHO05D004700 2.5e-35 152.9 93 68.8
AT4G01883 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 3.2e-35 152.5 91 70.3
Carub.0006s3535 Capsella rubella HOM05D004068 ORTHO05D004700 4.2e-35 152.1 165 49.1
CARHR249850 Cardamine hirsuta HOM05D004068 ORTHO05D004700 5.5e-35 151.8 159 50.3
BcaB01g02105 Brassica carinata HOM05D004068 ORTHO05D004700 2.1e-34 149.8 91 71.4
BcaC04g24068 Brassica carinata HOM05D004068 ORTHO05D004700 2.1e-34 149.8 160 50.6
Sp6g01730 Schrenkiella parvula HOM05D004068 ORTHO05D004700 2.1e-34 149.8 91 71.4
Sabra14G0085500 Salix brachista HOM05D004068 ORTHO05D004700 1.0e-33 147.5 121 57.0
AL6G51410 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 1.3e-33 147.1 94 68.1
CAN.G100.23 Capsicum annuum HOM05D004068 ORTHO05D004700 3.9e-33 145.6 81 77.8
THA.LOC104801319 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 3.9e-33 145.6 138 54.3
Hund09678 Selenicereus undatus HOM05D004068 ORTHO05D004700 6.7e-33 144.8 82 78.0
C09p01400 Brassica napus HOM05D004068 ORTHO05D004700 2.5e-32 142.9 162 48.8
Sabra02G0165200 Salix brachista HOM05D004068 ORTHO05D004700 7.4e-32 141.4 121 54.5
BolC9t53073H Brassica oleracea HOM05D004068 ORTHO05D004700 1.3e-31 140.6 168 47.0
CDE02G2955 Ceratophyllum demersum HOM05D000037 ORTHO05D001684 8.2e-31 137.9 79 77.2
BolC5t28909H Brassica oleracea HOM05D004068 ORTHO05D004700 1.8e-30 136.7 92 66.3
BraA10t42405Z Brassica rapa HOM05D004068 ORTHO05D004700 3.1e-30 136.0 91 65.9
Phvul.007G211200 Phaseolus vulgaris HOM05D004068 ORTHO05D004700 3.1e-30 136.0 125 57.6
Lj5g0018153 Lotus japonicus HOM05D004068 ORTHO05D004700 7.6e-29 131.3 91 70.3
Psat6g159440 Pisum sativum HOM05D004068 ORTHO05D004700 7.6e-29 131.3 73 79.5
Dinv12104 Davidia involucrata HOM05D004068 ORTHO05D004700 5.0e-28 128.6 65 90.8
SEGI_19128 Sequoiadendron giganteum HOM05D004068 ORTHO05D004700 5.0e-28 128.6 90 57.8
VMungo0720G2238 Vigna mungo HOM05D004068 ORTHO05D004700 5.0e-28 128.6 88 67.0
Lj1A11T70 Lonicera japonica HOM05D004068 ORTHO05D004700 1.9e-27 126.7 165 45.5
Carub.0001s0154 Capsella rubella HOM05D004068 ORTHO05D004700 5.5e-27 125.2 96 54.2
AT1G02470 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 7.2e-27 124.8 96 56.2
arahy.Tifrunner.gnm1.ann1.20WW32 Arachis hypogaea HOM05D004068 ORTHO05D004700 9.3e-27 124.4 69 79.7
arahy.Tifrunner.gnm1.ann1.G5UTBZ Arachis hypogaea HOM05D004068 ORTHO05D004700 9.3e-27 124.4 69 79.7
BcaC07g42396 Brassica carinata HOM05D004068 ORTHO05D004700 1.2e-26 124.0 83 66.3
AL1G11810 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 2.1e-26 123.2 96 56.2
CARHR001790 Cardamine hirsuta HOM05D004068 ORTHO05D004700 2.1e-26 123.2 147 42.2
Thhalv10008621m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 2.7e-26 122.9 90 55.6
A09p68650 Brassica napus HOM05D004068 ORTHO05D004700 1.0e-25 120.9 88 55.7
BraA09t42208Z Brassica rapa HOM05D004068 ORTHO05D004700 1.0e-25 120.9 88 55.7
Ca_10252_v3 Cicer arietinum L. HOM05D004068 ORTHO05D004700 1.0e-25 120.9 147 43.5
vmacro09333 Vaccinium macrocarpon HOM05D004068 ORTHO05D004700 1.0e-25 120.9 65 84.6
BcaC07g42395 Brassica carinata HOM05D004068 ORTHO05D004700 1.8e-25 120.2 88 55.7
C08p53250 Brassica napus HOM05D004068 ORTHO05D004700 1.8e-25 120.2 88 55.7
BolC8t52840H Brassica oleracea HOM05D004068 ORTHO05D004700 1.8e-25 120.2 88 55.7
THA.LOC104801317 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 1.8e-25 120.2 96 57.3
Sp1g01540 Schrenkiella parvula HOM05D004068 ORTHO05D004700 3.0e-25 119.4 90 52.2
Ah.02g112620 Amaranthus hybridus HOM05D004068 ORTHO05D004700 6.7e-25 118.2 63 81.0
A10p01260 Brassica napus HOM05D004068 ORTHO05D004700 8.7e-25 117.9 90 52.2
C05p01260 Brassica napus HOM05D004068 ORTHO05D004700 8.7e-25 117.9 90 52.2
BraA10t42404Z Brassica rapa HOM05D004068 ORTHO05D004700 8.7e-25 117.9 90 52.2
AagrBONN_evm.TU.Sc2ySwM_228.3301 Anthoceros agrestis HOM05D004068 ORTHO05D004700 1.1e-24 117.5 88 54.5
SMO134G0067 Selaginella moellendorffii HOM05D004068 ORTHO05D004700 1.9e-24 116.7 82 61.0
Aa31LG1G10100 Aethionema arabicum HOM05D004068 ORTHO05D004700 4.3e-24 115.5 136 41.9
Mapoly0066s0015 Marchantia polymorpha HOM05D004068 ORTHO05D004700 4.3e-24 115.5 88 53.4
TPR.G3089 Trifolium pratense HOM05D004068 ORTHO05D004700 5.7e-24 115.2 68 73.5
BraA09t35801Z Brassica rapa HOM05D004068 ORTHO05D004700 1.3e-23 114.0 149 43.6
Pp3c9_13510 Physcomitrium patens HOM05D004068 ORTHO05D004700 4.8e-23 112.1 88 50.0
Pp3c26_7940 Physcomitrium patens HOM05D004068 ORTHO05D004700 5.3e-22 108.6 88 47.7
CBR_g29411 Chara braunii HOM05D004068 ORTHO05D004700 2.9e-20 102.8 88 47.7
CAN.G257.121 Capsicum annuum HOM05D004068 ORTHO05D004700 5.5e-19 98.6 108 49.1
HPP92_015252 Vanilla planifolia HOM05D004068 ORTHO05D004700 5.5e-19 98.6 52 76.9
Cre14.g616250 Chlamydomonas reinhardtii HOM05D004068 ORTHO05D004700 7.9e-18 94.7 87 46.0
MCO03G258 Micromonas commoda HOM05D004068 ORTHO05D004700 1.7e-15 87.0 88 40.9
Aa31LG5G1470 Aethionema arabicum HOM05D004068 ORTHO05D004700 3.1e-14 82.8 106 43.4
Glyma.19G225300 Glycine max HOM05D004068 ORTHO05D004700 9.1e-14 81.3 85 51.8
ClCG09G004770 Citrullus lanatus HOM05D004068 ORTHO05D004700 1.5e-13 80.5 91 45.1
PRCOL_00002997 Prasinoderma coloniale HOM05D004068 ORTHO05D004700 1.5e-13 80.5 98 36.7
Oeu052569.2 Olea europaea HOM05D004068 ORTHO05D004700 2.6e-13 79.7 101 45.5
Oeu044746.1 Olea europaea HOM05D004068 ORTHO05D004700 3.4e-13 79.3 94 45.7
Os01g0328600 Oryza sativa ssp. japonica HOM05D004068 ORTHO05D004700 3.6e-10 69.3 49 55.1
BcaC03g18203 Brassica carinata HOM05D004068 ORTHO05D004700 7.9e-10 68.2 113 39.8
A02p42700 Brassica napus HOM05D004068 ORTHO05D004700 7.9e-10 68.2 110 38.2
C02p62690 Brassica napus HOM05D004068 ORTHO05D004700 1.0e-09 67.8 102 40.2
A09p01340 Brassica napus HOM05D004068 ORTHO05D004700 3.0e-09 66.2 117 36.8


User provided reference genes

Program Settings