Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031454 Camellia sinensis var. sinensis HOM05D003304 ORTHO05D003762 2.3e-80 302.8 225 100.0
Dinv29740 Davidia involucrata HOM05D003304 ORTHO05D003762 1.1e-37 161.0 183 53.6
Actinidia14289 Actinidia chinensis HOM05D003304 ORTHO05D003762 4.6e-33 145.6 186 50.0
Actinidia19582 Actinidia chinensis HOM05D003304 ORTHO05D003762 2.8e-30 136.3 181 47.5
Nitab4.5_0000513g0170 Nicotiana tabacum HOM05D003304 ORTHO05D003762 8.2e-30 134.8 235 46.0
CAN.G261.4 Capsicum annuum HOM05D003304 ORTHO05D003762 1.4e-29 134.0 80 81.2
Actinidia40286 Actinidia chinensis HOM05D003304 ORTHO05D003762 1.8e-29 133.7 181 47.0
Nitab4.5_0005362g0020 Nicotiana tabacum HOM05D003304 ORTHO05D003762 1.8e-29 133.7 230 49.1
Oeu006408.1 Olea europaea HOM05D003304 ORTHO05D003762 5.3e-29 132.1 196 47.4
MSTRG.3901 Avicennia marina HOM05D003304 ORTHO05D003762 5.9e-28 128.6 230 39.6
SGA_v2.0_scaffold18G08346 Striga asiatica HOM05D003304 ORTHO05D003762 5.9e-28 128.6 198 47.5
Solyc01g066640.2 Solanum lycopersicum HOM05D003304 ORTHO05D003762 3.8e-27 125.9 83 74.7
PGSC0003DMG400035598 Solanum tuberosum HOM05D003304 ORTHO05D003762 1.9e-26 123.6 74 83.8
Sopen01g028290 Solanum pennellii HOM05D003304 ORTHO05D003762 2.5e-26 123.2 74 81.1
Lsat_1_v5_gn_6_95300 Lactuca sativa HOM05D003304 ORTHO05D003762 1.2e-25 120.9 207 47.3
Migut.G00140 Erythranthe guttata HOM05D003304 ORTHO05D003762 4.6e-25 119.0 86 73.3
QL06p009983 Quercus lobata HOM05D003304 ORTHO05D003762 1.0e-24 117.9 190 57.9
QL93p2007_0071 Quercus lobata HOM05D003304 ORTHO05D003762 1.0e-24 117.9 190 57.9
SGA_v2.0_scaffold67G22614 Striga asiatica HOM05D003304 ORTHO05D003762 1.0e-24 117.9 180 43.3
Oeu001109.1 Olea europaea HOM05D003304 ORTHO05D003762 1.4e-24 117.5 182 50.0
Cc03_g01680 Coffea canephora HOM05D003304 ORTHO05D003762 2.3e-24 116.7 222 44.1
DCAR_023290 Daucus carota HOM05D003304 ORTHO05D003762 3.9e-24 115.9 179 39.1
Hma1.2p1_0078F.1_g040430 Hydrangea macrophylla HOM05D003304 ORTHO05D003762 8.8e-24 114.8 217 38.7
ECA240G0321 Erigeron canadensis HOM05D003304 ORTHO05D003762 1.5e-23 114.0 192 66.7
Nitab4.5_0000570g0270 Nicotiana tabacum HOM05D003304 ORTHO05D003762 2.0e-23 113.6 170 42.4
CAN.G484.45 Capsicum annuum HOM05D003304 ORTHO05D003762 4.3e-23 112.5 192 40.1
Nitab4.5_0000895g0020 Nicotiana tabacum HOM05D003304 ORTHO05D003762 4.3e-23 112.5 227 38.3
unitig_748.g8726 Utricularia gibba HOM05D003304 ORTHO05D003762 4.3e-23 112.5 68 79.4
Rhsim02G0007700 Rhododendron simsii HOM05D003304 ORTHO05D003762 9.7e-23 111.3 178 46.1
Sabra10G0007700 Salix brachista HOM05D003304 ORTHO05D003762 1.7e-22 110.5 199 46.2
RcHm_v2.0_Chr4g0422951 Rosa chinensis HOM05D003304 ORTHO05D003762 2.2e-22 110.2 169 45.6
Potri.010G012000 Populus trichocarpa HOM05D003304 ORTHO05D003762 6.3e-22 108.6 241 44.4
HanXRQChr03g0089411 Helianthus annuus HOM05D003304 ORTHO05D003762 1.4e-21 107.5 211 44.1
FvH4_4g18460 Fragaria vesca HOM05D003304 ORTHO05D003762 2.4e-21 106.7 182 43.4
Sopen12g034120 Solanum pennellii HOM05D003304 ORTHO05D003762 2.4e-21 106.7 184 39.1
HanXRQChr13g0420021 Helianthus annuus HOM05D003304 ORTHO05D003762 3.1e-21 106.3 65 84.6
Nitab4.5_0001233g0020 Nicotiana tabacum HOM05D003304 ORTHO05D003762 3.1e-21 106.3 82 70.7
FAN12G0090 Fragaria x ananassa HOM05D003304 ORTHO05D003762 4.1e-21 105.9 182 44.5
FAN17G2918 Fragaria x ananassa HOM05D003304 ORTHO05D003762 5.3e-21 105.5 233 41.6
Solyc12g099450.3 Solanum lycopersicum HOM05D003304 ORTHO05D003762 6.9e-21 105.1 184 38.6
TWI53G1575 Tripterygium wilfordii HOM05D003304 ORTHO05D003762 9.1e-21 104.8 187 46.0
Peaxi162Scf00246g00127 Petunia axillaris HOM05D003304 ORTHO05D003762 1.2e-20 104.4 72 72.2
Duzib052G0413 Durio zibethinus HOM05D003304 ORTHO05D003762 2.0e-20 103.6 188 55.9
Gohir.D10G171500 Gossypium hirsutum HOM05D003304 ORTHO05D003762 2.6e-20 103.2 216 50.0
Gorai.011G191600 Gossypium raimondii HOM05D003304 ORTHO05D003762 2.6e-20 103.2 216 50.5
PGSC0003DMG400004631 Solanum tuberosum HOM05D003304 ORTHO05D003762 2.6e-20 103.2 184 38.0
FAN07G2181 Fragaria x ananassa HOM05D003304 ORTHO05D003762 3.4e-20 102.8 169 45.0
Thecc.04G287300 Theobroma cacao HOM05D003304 ORTHO05D003762 3.4e-20 102.8 185 60.0
FAN12G1565 Fragaria x ananassa HOM05D003304 ORTHO05D003762 1.0e-19 101.3 182 44.0
Peaxi162Scf00646g00329 Petunia axillaris HOM05D003304 ORTHO05D003762 2.2e-19 100.1 55 81.8
Oeu053986.1 Olea europaea HOM05D003304 ORTHO05D003762 2.9e-19 99.8 209 41.6
MD16G1166700 Malus domestica HOM05D003304 ORTHO05D003762 3.8e-19 99.4 182 58.8
TWI09G1044 Tripterygium wilfordii HOM05D003304 ORTHO05D003762 6.5e-19 98.6 200 39.0
Atru.chr6.1996 Acer truncatum HOM05D003304 ORTHO05D003762 2.5e-18 96.7 63 81.0
Migut.N00085 Erythranthe guttata HOM05D003304 ORTHO05D003762 2.5e-18 96.7 55 78.2
Ciclev10004985m.g Citrus clementina HOM05D003304 ORTHO05D003762 3.2e-18 96.3 193 44.6
Phvul.003G096600 Phaseolus vulgaris HOM05D003304 ORTHO05D003762 1.2e-17 94.4 184 57.6
CANSAT78G0081 Cannabis sativa HOM05D003304 ORTHO05D003762 1.6e-17 94.0 63 76.2
MELO3C021319.2 Cucumis melo HOM05D003304 ORTHO05D003762 2.7e-17 93.2 176 39.8
DCAR_027060 Daucus carota HOM05D003304 ORTHO05D003762 2.7e-17 93.2 56 76.8
VMungo1215G1188 Vigna mungo HOM05D003304 ORTHO05D003762 2.7e-17 93.2 180 53.9
Oeu016249.1 Olea europaea HOM05D003304 ORTHO05D003762 6.1e-17 92.0 197 36.5
Gohir.A10G165400 Gossypium hirsutum HOM05D003304 ORTHO05D003762 1.4e-16 90.9 207 46.9
Hma1.2p1_0147F.1_g065875 Hydrangea macrophylla HOM05D003304 ORTHO05D003762 1.8e-16 90.5 62 74.2
Hma1.2p1_1784F.1_g302143 Hydrangea macrophylla HOM05D003304 ORTHO05D003762 1.8e-16 90.5 62 74.2
SGA_v2.0_scaffold428G51527 Striga asiatica HOM05D003304 ORTHO05D003762 2.3e-16 90.1 187 40.1
Potri.008G220700 Populus trichocarpa HOM05D003304 ORTHO05D003762 3.0e-16 89.7 67 71.6
THA.LOC104827338 Tarenaya hassleriana HOM05D003304 ORTHO05D003762 3.0e-16 89.7 181 45.9
ClCG06G005040 Citrullus lanatus HOM05D003304 ORTHO05D003762 5.1e-16 89.0 175 38.3
Sed0002765 Sechium edule HOM05D003304 ORTHO05D003762 5.1e-16 89.0 204 40.2
TWI73G0854 Tripterygium wilfordii HOM05D003304 ORTHO05D003762 5.1e-16 89.0 186 38.7
unitig_32.g11868 Utricularia gibba HOM05D003304 ORTHO05D003762 5.1e-16 89.0 70 67.1
Medtr4g120050 Medicago truncatula HOM05D003304 ORTHO05D003762 1.1e-15 87.8 67 70.1
Oeu016250.1 Olea europaea HOM05D003304 ORTHO05D003762 1.1e-15 87.8 197 36.0
AT5G49100 Arabidopsis thaliana HOM05D003304 ORTHO05D003762 5.7e-15 85.5 76 67.1
PGR031G2491 Punica granatum HOM05D003304 ORTHO05D003762 7.4e-15 85.1 67 67.2
Manes.15G011400 Manihot esculenta HOM05D003304 ORTHO05D003762 1.3e-14 84.3 217 39.6
Carub.0008s0891 Capsella rubella HOM05D003304 ORTHO05D003762 1.7e-14 84.0 72 66.7
Lj4g0014231 Lotus japonicus HOM05D003304 ORTHO05D003762 2.2e-14 83.6 192 43.8
Thhalv10004314m.g Eutrema salsugineum HOM05D003304 ORTHO05D003762 2.8e-14 83.2 74 64.9
COL.COLO4_13834 Corchorus olitorius HOM05D003304 ORTHO05D003762 4.8e-14 82.4 62 74.2
AL8G22610 Arabidopsis lyrata HOM05D003304 ORTHO05D003762 6.3e-14 82.0 71 66.2
Hund24887 Selenicereus undatus HOM05D003304 ORTHO05D003762 6.3e-14 82.0 195 45.1
THA.LOC104803101 Tarenaya hassleriana HOM05D003304 ORTHO05D003762 1.1e-13 81.3 174 46.0
TPR.G3216 Trifolium pratense HOM05D003304 ORTHO05D003762 1.1e-13 81.3 64 70.3
BcaB07g34216 Brassica carinata HOM05D003304 ORTHO05D003762 1.4e-13 80.9 76 64.5
Glyma.17G027500 Glycine max HOM05D003304 ORTHO05D003762 1.8e-13 80.5 61 68.9
SGA_v2.0_scaffold9G04881 Striga asiatica HOM05D003304 ORTHO05D003762 2.4e-13 80.1 75 60.0
Glyma.07G246500 Glycine max HOM05D003304 ORTHO05D003762 5.3e-13 79.0 61 68.9
BcaC03g17695 Brassica carinata HOM05D003304 ORTHO05D003762 9.1e-13 78.2 66 65.2
C02p57040 Brassica napus HOM05D003304 ORTHO05D003762 9.1e-13 78.2 66 65.2
BolC2t11774H Brassica oleracea HOM05D003304 ORTHO05D003762 9.1e-13 78.2 66 65.2
CsaV3_6G023920 Cucumis sativus L. HOM05D003304 ORTHO05D003762 9.1e-13 78.2 176 36.9
Aqoxy3G03400 Aquilegia oxysepala HOM05D003304 ORTHO05D003762 1.6e-12 77.4 62 72.6
Haze_01180 Corylus avellana HOM05D003304 ORTHO05D003762 1.6e-12 77.4 49 77.6
Lalb_Chr13g0303541 Lupinus albus HOM05D003304 ORTHO05D003762 1.6e-12 77.4 194 34.5
SalBow5G3057 Salvia bowleyana HOM05D003304 ORTHO05D003762 1.6e-12 77.4 52 71.2
A02p37880 Brassica napus HOM05D003304 ORTHO05D003762 4.5e-12 75.9 67 67.2
BraA02t08771Z Brassica rapa HOM05D003304 ORTHO05D003762 4.5e-12 75.9 67 67.2
Medtr2g436340 Medicago truncatula HOM05D003304 ORTHO05D003762 4.5e-12 75.9 71 64.8
CiPaw.01G146800 Carya illinoinensis HOM05D003304 ORTHO05D003762 7.7e-12 75.1 179 40.2
Duzib212G1014 Durio zibethinus HOM05D003304 ORTHO05D003762 7.7e-12 75.1 182 56.0
MD13G1166900 Malus domestica HOM05D003304 ORTHO05D003762 7.7e-12 75.1 197 43.7
Prupe.1G133400 Prunus persica HOM05D003304 ORTHO05D003762 7.7e-12 75.1 44 79.5
Cpa.g.sc16.193 Carica papaya HOM05D003304 ORTHO05D003762 1.0e-11 74.7 62 64.5
TAR622G1126 Trochodendron aralioides HOM05D003304 ORTHO05D003762 1.0e-11 74.7 172 51.7
CDE02G3640 Ceratophyllum demersum HOM05D003304 ORTHO05D003762 1.3e-11 74.3 63 69.8
GSVIVG01035139001 Vitis vinifera HOM05D003304 ORTHO05D003762 1.7e-11 73.9 184 43.5
TPR.G31283 Trifolium pratense HOM05D003304 ORTHO05D003762 2.9e-11 73.2 185 44.9
A06p38580 Brassica napus HOM05D003304 ORTHO05D003762 3.8e-11 72.8 52 73.1
BraA06t26773Z Brassica rapa HOM05D003304 ORTHO05D003762 3.8e-11 72.8 51 74.5
PGR004G2799 Punica granatum HOM05D003304 ORTHO05D003762 3.8e-11 72.8 87 52.9
CDE09G0254 Ceratophyllum demersum HOM05D003304 ORTHO05D003762 5.0e-11 72.4 62 67.7
Sp2g19450 Schrenkiella parvula HOM05D003304 ORTHO05D003762 5.0e-11 72.4 72 59.7
Aa31LG5G17450 Aethionema arabicum HOM05D003304 ORTHO05D003762 6.5e-11 72.0 48 75.0
DCAR_002474 Daucus carota HOM05D003304 ORTHO05D003762 1.1e-10 71.2 43 76.7
Manes.03G197200 Manihot esculenta HOM05D003304 ORTHO05D003762 1.1e-10 71.2 53 69.8
unitig_26.g10550 Utricularia gibba HOM05D003304 ORTHO05D003762 1.1e-10 71.2 71 62.0
C07p39670 Brassica napus HOM05D003304 ORTHO05D003762 2.5e-10 70.1 65 64.6
BolC7t44491H Brassica oleracea HOM05D003304 ORTHO05D003762 2.5e-10 70.1 65 64.6
Sabra08G0152100 Salix brachista HOM05D003304 ORTHO05D003762 2.5e-10 70.1 40 85.0
Carub.0003s0640 Capsella rubella HOM05D003304 ORTHO05D003762 3.2e-10 69.7 62 62.9
Lj6g0014556 Lotus japonicus HOM05D003304 ORTHO05D003762 3.2e-10 69.7 190 35.3
Sed0009993 Sechium edule HOM05D003304 ORTHO05D003762 3.2e-10 69.7 66 59.1
CiPaw.02G081100 Carya illinoinensis HOM05D003304 ORTHO05D003762 4.2e-10 69.3 67 56.7
Thhalv10021990m.g Eutrema salsugineum HOM05D003304 ORTHO05D003762 4.2e-10 69.3 76 56.6
Psat4g026560 Pisum sativum HOM05D003304 ORTHO05D003762 4.2e-10 69.3 198 42.9
AT3G06868 Arabidopsis thaliana HOM05D003304 ORTHO05D003762 5.5e-10 68.9 55 69.1
PSO357G0352 Papaver somniferum HOM05D003304 ORTHO05D003762 5.5e-10 68.9 40 82.5
Psat1g155200 Pisum sativum HOM05D003304 ORTHO05D003762 5.5e-10 68.9 215 42.8
Aa31sc105G60 Aethionema arabicum HOM05D003304 ORTHO05D003762 9.4e-10 68.2 65 58.5
AL3G18000 Arabidopsis lyrata HOM05D003304 ORTHO05D003762 9.4e-10 68.2 76 55.3
unitig_749.g13390 Utricularia gibba HOM05D003304 ORTHO05D003762 9.4e-10 68.2 64 59.4
CARHR081490 Cardamine hirsuta HOM05D003304 ORTHO05D003762 1.2e-09 67.8 48 68.8
CARHR182640 Cardamine hirsuta HOM05D003304 ORTHO05D003762 1.2e-09 67.8 55 65.5
Sp3g05830 Schrenkiella parvula HOM05D003304 ORTHO05D003762 1.6e-09 67.4 70 57.1
PSO170G6833 Papaver somniferum HOM05D003304 ORTHO05D003762 2.1e-09 67.0 44 72.7
Gohir.D09G238900 Gossypium hirsutum HOM05D003304 ORTHO05D003762 3.6e-09 66.2 205 53.2
Gorai.006G261600 Gossypium raimondii HOM05D003304 ORTHO05D003762 3.6e-09 66.2 205 53.2
Nn4g22032 Nelumbo nucifera HOM05D003304 ORTHO05D003762 4.7e-09 65.9 209 43.1
Lalb_Chr15g0083391 Lupinus albus HOM05D003304 ORTHO05D003762 6.1e-09 65.5 72 54.2
A05p41260 Brassica napus HOM05D003304 ORTHO05D003762 8.0e-09 65.1 42 73.8
C05p60480 Brassica napus HOM05D003304 ORTHO05D003762 8.0e-09 65.1 42 73.8
BolC5t34702H Brassica oleracea HOM05D003304 ORTHO05D003762 8.0e-09 65.1 42 73.8
BraA05t22849Z Brassica rapa HOM05D003304 ORTHO05D003762 8.0e-09 65.1 42 73.8
Glyma.09G043300 Glycine max HOM05D003304 ORTHO05D003762 2.3e-08 63.5 183 32.2
Gohir.A09G238000 Gossypium hirsutum HOM05D003304 ORTHO05D003762 4.0e-08 62.8 205 53.7
BNapus_Darmor_BZH_scaffold_117p00150 Brassica napus HOM05D003304 ORTHO05D003762 5.2e-08 62.4 76 50.0
EL10Ac3g06624 Beta vulgaris HOM05D003304 ORTHO05D003762 6.7e-08 62.0 63 58.7
BcaC05g30564 Brassica carinata HOM05D003304 ORTHO05D003762 6.7e-08 62.0 54 64.8
SHI00254 Sapria himalayana HOM05D003304 ORTHO05D003762 6.7e-08 62.0 68 58.8
BraA01t04408Z Brassica rapa HOM05D003304 ORTHO05D003762 8.8e-08 61.6 57 63.2
BcaC09g47926 Brassica carinata HOM05D003304 ORTHO05D003762 1.1e-07 61.2 76 51.3
BolC1t05580H Brassica oleracea HOM05D003304 ORTHO05D003762 1.1e-07 61.2 76 51.3
Lalb_Chr07g0177821 Lupinus albus HOM05D003304 ORTHO05D003762 2.0e-07 60.5 45 66.7
Oeu037701.1 Olea europaea HOM05D003304 ORTHO05D003762 2.0e-07 60.5 58 56.9
Glyma.15G149700 Glycine max HOM05D003304 ORTHO05D003762 2.6e-07 60.1 177 31.1
A03p34930 Brassica napus HOM05D003304 ORTHO05D003762 3.3e-07 59.7 42 69.0
BraA03t12673Z Brassica rapa HOM05D003304 ORTHO05D003762 3.3e-07 59.7 42 69.0
C03p42510 Brassica napus HOM05D003304 ORTHO05D003762 4.4e-07 59.3 51 64.7
BolC3t16521H Brassica oleracea HOM05D003304 ORTHO05D003762 4.4e-07 59.3 51 64.7
HPP92_023378 Vanilla planifolia HOM05D003304 ORTHO05D003762 9.7e-07 58.2 42 69.0
HPP92_024289 Vanilla planifolia HOM05D003304 ORTHO05D003762 1.7e-06 57.4 67 52.2
DCAR_030514 Daucus carota HOM05D003304 ORTHO05D003762 2.2e-06 57.0 38 73.7
Eucgr.B01602 Eucalyptus grandis HOM05D003304 ORTHO05D003762 2.2e-06 57.0 35 74.3
Phvul.009G249600 Phaseolus vulgaris HOM05D003304 ORTHO05D003762 3.7e-06 56.2 40 65.0
Eucgr.H03942 Eucalyptus grandis HOM05D003304 ORTHO05D003762 6.3e-06 55.5 65 53.8
SalBow2G2784 Salvia bowleyana HOM05D003304 ORTHO05D003762 6.3e-06 55.5 41 65.9
VMungo1309G2051 Vigna mungo HOM05D003304 ORTHO05D003762 8.2e-06 55.1 182 31.3


User provided reference genes

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