Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031442 Camellia sinensis var. sinensis HOM05D001603 ORTHO05D001393 2.0e-86 322.4 166 100.0
Actinidia01802 Actinidia chinensis HOM05D024403 ORTHO05D007321 2.3e-13 79.7 75 46.7
FAN05G1005 Fragaria x ananassa HOM05D001603 ORTHO05D001393 4.1e-10 68.9 81 39.5
MD09G1164600 Malus domestica HOM05D001603 ORTHO05D001393 1.5e-09 67.0 77 39.0
THA.LOC104820858 Tarenaya hassleriana HOM05D009029 ORTHO05D009596 2.6e-09 66.2 93 41.9
THA.LOC104827231 Tarenaya hassleriana HOM05D009029 ORTHO05D009596 1.0e-08 64.3 93 41.9
AT2G14378 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 1.3e-08 63.9 95 38.9
AT4G35165 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 1.3e-08 63.9 95 37.9
FAN23G0346 Fragaria x ananassa HOM05D001603 ORTHO05D001393 1.7e-08 63.5 89 42.7
FAN23G1220 Fragaria x ananassa HOM05D001603 ORTHO05D001393 1.7e-08 63.5 89 42.7
RcHm_v2.0_Chr2g0149601 Rosa chinensis HOM05D001603 ORTHO05D001393 2.2e-08 63.2 70 40.0
FAN17G1385 Fragaria x ananassa HOM05D001603 ORTHO05D001393 2.9e-08 62.8 90 43.3
FvH4_1g02090 Fragaria vesca HOM05D001603 ORTHO05D001393 3.8e-08 62.4 84 44.0
FAN19G2115 Fragaria x ananassa HOM05D001603 ORTHO05D001393 3.8e-08 62.4 84 44.0
FAN28G2563 Fragaria x ananassa HOM05D001603 ORTHO05D001393 5.0e-08 62.0 90 43.3
FvH4_4g12560 Fragaria vesca HOM05D001603 ORTHO05D001393 6.5e-08 61.6 87 42.5
FAN12G3546 Fragaria x ananassa HOM05D001603 ORTHO05D001393 6.5e-08 61.6 87 42.5
FAN22G0761 Fragaria x ananassa HOM05D001603 ORTHO05D001393 6.5e-08 61.6 90 42.2
CARHR243480 Cardamine hirsuta HOM05D001603 ORTHO05D001393 8.5e-08 61.2 86 37.2
PSO478G0125 Papaver somniferum HOM05D001603 ORTHO05D001393 1.1e-07 60.8 97 35.1
Aqoxy3G02474 Aquilegia oxysepala HOM05D000498 ORTHO05D000354 1.9e-07 60.1 55 45.5
BcaC06g33682 Brassica carinata HOM05D001603 ORTHO05D001393 2.5e-07 59.7 91 36.3
C07p38140 Brassica napus HOM05D001603 ORTHO05D001393 2.5e-07 59.7 91 36.3
BolC7t44336H Brassica oleracea HOM05D001603 ORTHO05D001393 2.5e-07 59.7 91 36.3
Actinidia24761 Actinidia chinensis HOM05D005040 ORTHO05D005984 3.2e-07 59.3 79 39.2
A06p40030 Brassica napus HOM05D001603 ORTHO05D001393 3.2e-07 59.3 91 36.3
BraA06t26918Z Brassica rapa HOM05D001603 ORTHO05D001393 3.2e-07 59.3 91 36.3
CARHR042990 Cardamine hirsuta HOM05D001603 ORTHO05D001393 4.2e-07 58.9 80 41.2
PSO782G1967 Papaver somniferum HOM05D001603 ORTHO05D001393 4.2e-07 58.9 92 34.8
Gohir.A13G020450 Gossypium hirsutum HOM05D001603 ORTHO05D001393 5.5e-07 58.5 70 40.0
BcaB07g30090 Brassica carinata HOM05D001603 ORTHO05D001393 7.2e-07 58.2 86 37.2
Thhalv10005158m.g Eutrema salsugineum HOM05D001603 ORTHO05D001393 7.2e-07 58.2 89 33.7
AT3G42565 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 9.4e-07 57.8 84 34.5
AL7G16040 Arabidopsis lyrata HOM05D001603 ORTHO05D001393 1.2e-06 57.4 85 34.1
FAN07G1734 Fragaria x ananassa HOM05D001603 ORTHO05D001393 1.2e-06 57.4 90 40.0
Gohir.D08G101050 Gossypium hirsutum HOM05D001603 ORTHO05D001393 1.2e-06 57.4 67 41.8
Gorai.004G109000 Gossypium raimondii HOM05D001603 ORTHO05D001393 1.2e-06 57.4 67 41.8
C04p54600 Brassica napus HOM05D001603 ORTHO05D001393 2.7e-06 56.2 72 38.9
BolC4t27003H Brassica oleracea HOM05D001603 ORTHO05D001393 3.6e-06 55.8 73 37.0
MD17G1163700 Malus domestica HOM05D001603 ORTHO05D001393 3.6e-06 55.8 83 32.5
C04p54650 Brassica napus HOM05D001603 ORTHO05D001393 4.7e-06 55.5 72 38.9
BcaC02g08400 Brassica carinata HOM05D001603 ORTHO05D001393 7.9e-06 54.7 72 37.5
BcaC02g08403 Brassica carinata HOM05D001603 ORTHO05D001393 7.9e-06 54.7 72 37.5
BcaC02g08405 Brassica carinata HOM05D001603 ORTHO05D001393 7.9e-06 54.7 72 37.5
BcaC02g08407 Brassica carinata HOM05D001603 ORTHO05D001393 7.9e-06 54.7 72 37.5
BolC4t27006H Brassica oleracea HOM05D001603 ORTHO05D001393 7.9e-06 54.7 72 37.5
BolC4t27013H Brassica oleracea HOM05D001603 ORTHO05D001393 7.9e-06 54.7 72 37.5


User provided reference genes

Program Settings