Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031435 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 0.0e+00 1707.6 896 100.0
CSS0025205 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 0.0e+00 1705.3 896 99.9
Dinv25318 Davidia involucrata HOM05D003671 ORTHO05D004285 0.0e+00 1286.6 905 77.1
CSS0036424 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 0.0e+00 1283.1 906 77.3
CSS0037141 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 0.0e+00 1282.3 906 77.2
Actinidia11522 Actinidia chinensis HOM05D003671 ORTHO05D004285 0.0e+00 1245.7 904 75.9
Actinidia29047 Actinidia chinensis HOM05D003671 ORTHO05D004285 0.0e+00 1245.0 900 76.3
Rhsim05G0229100 Rhododendron simsii HOM05D003671 ORTHO05D004285 0.0e+00 1228.4 910 73.6
Hma1.2p1_1052F.1_g252340 Hydrangea macrophylla HOM05D003671 ORTHO05D004285 0.0e+00 1181.4 905 72.8
vmacro20357 Vaccinium macrocarpon HOM05D003671 ORTHO05D004285 0.0e+00 1154.0 874 71.7
Rhsim04G0122600 Rhododendron simsii HOM05D003671 ORTHO05D004285 0.0e+00 1152.9 899 71.1
Manes.09G115800 Manihot esculenta HOM05D003671 ORTHO05D004285 0.0e+00 1092.8 904 66.7
Prupe.6G290600 Prunus persica HOM05D003671 ORTHO05D004285 0.0e+00 1082.4 904 65.8
Dinv11386 Davidia involucrata HOM05D003671 ORTHO05D004285 0.0e+00 1080.1 774 76.5
Thecc.04G154700 Theobroma cacao HOM05D003671 ORTHO05D004285 4.3e-311 1071.2 904 66.6
Manes.09G116100 Manihot esculenta HOM05D003671 ORTHO05D004285 5.1e-309 1064.3 904 64.9
Duzib151G0206 Durio zibethinus HOM05D003671 ORTHO05D004285 2.2e-304 1048.9 903 65.2
Potri.006G107500 Populus trichocarpa HOM05D003671 ORTHO05D004285 1.0e-301 1040.0 907 64.3
COL.COLO4_30007 Corchorus olitorius HOM05D003671 ORTHO05D004285 1.5e-300 1036.2 903 65.4
Ciclev10011037m.g Citrus clementina HOM05D003671 ORTHO05D004285 3.3e-300 1035.0 907 64.2
RcHm_v2.0_Chr3g0460911 Rosa chinensis HOM05D003671 ORTHO05D004285 8.2e-299 1030.4 906 64.7
Duzib212G0018 Durio zibethinus HOM05D003671 ORTHO05D004285 1.4e-298 1029.6 901 64.5
TAR636G3051 Trochodendron aralioides HOM05D003671 ORTHO05D004285 1.7e-296 1022.7 912 64.6
FAN05G5788 Fragaria x ananassa HOM05D003671 ORTHO05D004285 1.1e-295 1020.0 906 62.0
TAR633G2716 Trochodendron aralioides HOM05D003671 ORTHO05D004285 1.1e-295 1020.0 912 62.7
TAR636G0316 Trochodendron aralioides HOM05D003671 ORTHO05D004285 5.5e-295 1017.7 912 64.5
FAN05G3119 Fragaria x ananassa HOM05D003671 ORTHO05D004285 1.0e-293 1013.4 906 61.7
Atru.chr8.2376 Acer truncatum HOM05D003671 ORTHO05D004285 1.7e-291 1006.1 906 63.7
Cfa017060 Carpinus fangiana HOM05D003671 ORTHO05D004285 2.2e-291 1005.7 900 64.1
FAN14G5445 Fragaria x ananassa HOM05D003671 ORTHO05D004285 7.7e-289 997.3 906 62.9
FvH4_6g10170 Fragaria vesca HOM05D003671 ORTHO05D004285 2.2e-288 995.7 906 62.7
MSTRG.18954 Avicennia marina HOM05D003671 ORTHO05D004285 1.1e-287 993.4 903 62.6
Sabra06G0083600 Salix brachista HOM05D003671 ORTHO05D004285 4.8e-283 978.0 907 60.9
QL07p032733 Quercus lobata HOM05D003671 ORTHO05D004285 1.4e-282 976.5 859 65.3
Sabra04G0151200 Salix brachista HOM05D003671 ORTHO05D004285 5.3e-282 974.5 905 61.4
Lj3C942T7 Lonicera japonica HOM05D003671 ORTHO05D004285 1.2e-281 973.4 862 65.5
Potri.016G133700 Populus trichocarpa HOM05D003671 ORTHO05D004285 1.0e-280 970.3 907 60.7
CiPaw.10G164200 Carya illinoinensis HOM05D003671 ORTHO05D004285 1.7e-280 969.5 857 63.9
Cc06_g00530 Coffea canephora HOM05D003671 ORTHO05D004285 5.0e-280 968.0 888 62.3
Gorai.005G122800 Gossypium raimondii HOM05D003671 ORTHO05D004285 3.0e-277 958.7 896 60.5
MSTRG.5514 Avicennia marina HOM05D003671 ORTHO05D004285 4.0e-277 958.4 905 60.4
CANSAT35G0504 Cannabis sativa HOM05D003671 ORTHO05D004285 7.5e-276 954.1 903 61.6
TWI77G0322 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 2.2e-272 942.6 904 59.6
vmacro08928 Vaccinium macrocarpon HOM05D003671 ORTHO05D004285 6.1e-270 934.5 899 61.2
TWI74G1343 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 1.8e-269 932.9 912 59.8
FAN09G2383 Fragaria x ananassa HOM05D003671 ORTHO05D004285 4.0e-269 931.8 906 60.2
FAN02G1273 Fragaria x ananassa HOM05D003671 ORTHO05D004285 4.9e-267 924.9 905 60.3
Migut.J00060 Erythranthe guttata HOM05D003671 ORTHO05D004285 1.4e-266 923.3 903 59.1
CsaV3_3G033210 Cucumis sativus L. HOM05D003671 ORTHO05D004285 3.5e-265 918.7 920 59.8
MELO3C009114.2 Cucumis melo HOM05D003671 ORTHO05D004285 5.9e-265 917.9 920 59.8
MD12G1185300 Malus domestica HOM05D003671 ORTHO05D004285 2.3e-264 916.0 908 59.1
Glyma.18G211200 Glycine max HOM05D003671 ORTHO05D004285 5.0e-264 914.8 904 58.7
Nn2g10354 Nelumbo nucifera HOM05D003671 ORTHO05D004285 5.0e-264 914.8 916 58.4
Cpa.g.sc86.30 Carica papaya HOM05D003671 ORTHO05D004285 9.5e-263 910.6 802 64.0
SGA_v2.0_scaffold85G26648 Striga asiatica HOM05D003671 ORTHO05D004285 2.1e-262 909.4 904 57.2
CiPaw.09G218900 Carya illinoinensis HOM05D003671 ORTHO05D004285 8.0e-262 907.5 908 59.6
MD04G1172000 Malus domestica HOM05D003671 ORTHO05D004285 1.0e-261 907.1 904 59.1
Gohir.A03G087500 Gossypium hirsutum HOM05D003671 ORTHO05D004285 1.8e-261 906.4 896 60.3
Lj1g0018847 Lotus japonicus HOM05D003671 ORTHO05D004285 1.8e-261 906.4 901 59.2
Glyma.18G212400 Glycine max HOM05D003671 ORTHO05D004285 7.5e-260 901.0 906 60.2
Glyma.09G277700 Glycine max HOM05D003671 ORTHO05D004285 3.7e-259 898.7 907 57.9
Gohir.D02G108300 Gossypium hirsutum HOM05D003671 ORTHO05D004285 1.1e-258 897.1 895 60.0
Gorai.005G122900 Gossypium raimondii HOM05D003671 ORTHO05D004285 1.8e-258 896.3 895 60.0
Gohir.A03G088100 Gossypium hirsutum HOM05D003671 ORTHO05D004285 5.4e-258 894.8 895 60.0
SGA_v2.0_scaffold373G50172 Striga asiatica HOM05D003671 ORTHO05D004285 3.0e-256 889.0 902 58.6
Sed0011007 Sechium edule HOM05D003671 ORTHO05D004285 1.1e-255 887.1 920 57.0
Glyma.09G277602 Glycine max HOM05D003671 ORTHO05D004285 1.9e-255 886.3 890 58.5
Eucgr.K01274 Eucalyptus grandis HOM05D003671 ORTHO05D004285 4.3e-255 885.2 898 58.1
ClCG10G022620 Citrullus lanatus HOM05D003671 ORTHO05D004285 9.5e-255 884.0 920 58.0
Lalb_Chr03g0043701 Lupinus albus HOM05D003671 ORTHO05D004285 4.7e-254 881.7 904 58.8
Haze_21142 Corylus avellana HOM05D003671 ORTHO05D004285 1.0e-253 880.6 793 63.3
Haze_21147 Corylus avellana HOM05D003671 ORTHO05D004285 1.0e-253 880.6 793 63.3
MBI15_g31431_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 1.4e-253 880.2 913 57.3
PGR004G1797 Punica granatum HOM05D003671 ORTHO05D004285 6.8e-253 877.9 882 56.0
Lalb_Chr19g0124051 Lupinus albus HOM05D003671 ORTHO05D004285 2.0e-252 876.3 904 57.1
arahy.Tifrunner.gnm1.ann1.616PIC Arachis hypogaea HOM05D003671 ORTHO05D004285 9.8e-252 874.0 919 56.9
arahy.Tifrunner.gnm1.ann1.8XV151 Arachis hypogaea HOM05D003671 ORTHO05D004285 9.8e-252 874.0 919 56.9
Nitab4.5_0007794g0010 Nicotiana tabacum HOM05D003671 ORTHO05D004285 1.3e-251 873.6 901 57.8
TWI53G1222 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 1.7e-248 863.2 899 57.5
Phvul.008G084400 Phaseolus vulgaris HOM05D003671 ORTHO05D004285 6.6e-248 861.3 911 57.5
Peaxi162Scf00595g00423 Petunia axillaris HOM05D003671 ORTHO05D004285 2.5e-247 859.4 889 57.6
Lalb_Chr01g0023661 Lupinus albus HOM05D003671 ORTHO05D004285 3.3e-247 859.0 902 57.0
PGSC0003DMG400013061 Solanum tuberosum HOM05D003671 ORTHO05D004285 1.2e-246 857.1 887 58.4
Phvul.008G084500 Phaseolus vulgaris HOM05D003671 ORTHO05D004285 1.6e-246 856.7 906 57.6
Ca_07750_v3 Cicer arietinum L. HOM05D003671 ORTHO05D004285 6.8e-245 851.3 856 58.2
Nitab4.5_0002348g0020 Nicotiana tabacum HOM05D003671 ORTHO05D004285 3.4e-244 849.0 908 58.4
VMungo1383G1272 Vigna mungo HOM05D003671 ORTHO05D004285 9.8e-244 847.4 860 58.1
Psat0s1450g0040 Pisum sativum HOM05D003671 ORTHO05D004285 1.1e-242 844.0 915 56.1
CAN.G604.1 Capsicum annuum HOM05D003671 ORTHO05D004285 2.7e-241 839.3 903 55.3
Medtr7g072520 Medicago truncatula HOM05D003671 ORTHO05D004285 1.3e-240 837.0 904 56.3
Ca_07746_v3 Cicer arietinum L. HOM05D003671 ORTHO05D004285 5.1e-240 835.1 906 56.4
Sopen09g011320 Solanum pennellii HOM05D003671 ORTHO05D004285 3.3e-239 832.4 887 57.5
Solyc09g018310.4 Solanum lycopersicum HOM05D003671 ORTHO05D004285 9.5e-239 830.9 887 57.5
Nitab4.5_0002204g0070 Nicotiana tabacum HOM05D003671 ORTHO05D004285 1.1e-237 827.4 862 57.5
Oeu026963.1 Olea europaea HOM05D003671 ORTHO05D004285 4.0e-237 825.5 857 57.4
DCAR_010961 Daucus carota HOM05D003671 ORTHO05D004285 2.0e-236 823.2 836 56.6
CAN.G15.24 Capsicum annuum HOM05D003671 ORTHO05D004285 4.9e-235 818.5 843 58.0
Hund03740 Selenicereus undatus HOM05D003671 ORTHO05D004285 1.2e-233 813.9 910 53.2
Medtr7g072590 Medicago truncatula HOM05D003671 ORTHO05D004285 2.7e-233 812.8 860 56.0
TPR.G4424 Trifolium pratense HOM05D003671 ORTHO05D004285 3.0e-232 809.3 909 55.2
Ah.08g209720 Amaranthus hybridus HOM05D003671 ORTHO05D004285 5.1e-232 808.5 907 53.8
DCAR_021427 Daucus carota HOM05D003671 ORTHO05D004285 1.2e-230 803.9 846 57.7
Lj1g0001828 Lotus japonicus HOM05D003671 ORTHO05D004285 2.6e-228 796.2 904 54.5
Nitab4.5_0000126g0070 Nicotiana tabacum HOM05D003671 ORTHO05D004285 3.4e-228 795.8 864 57.8
EL10Ac7g17060 Beta vulgaris HOM05D003671 ORTHO05D004285 1.7e-227 793.5 905 53.8
Lalb_Chr07g0190641 Lupinus albus HOM05D003671 ORTHO05D004285 5.1e-224 781.9 911 55.0
ECA247G1347 Erigeron canadensis HOM05D003671 ORTHO05D004285 7.3e-223 778.1 906 54.2
AUR62029686 Chenopodium quinoa HOM05D003671 ORTHO05D004285 2.1e-222 776.5 876 54.6
Oeu060440.1 Olea europaea HOM05D003671 ORTHO05D004285 3.4e-220 769.2 841 56.7
Sc07g0005760 Simmondsia chinensis HOM05D003671 ORTHO05D004285 1.9e-218 763.5 911 53.3
THA.LOC104806637 Tarenaya hassleriana HOM05D003671 ORTHO05D004285 1.8e-216 756.9 861 53.4
Gohir.D02G108200 Gossypium hirsutum HOM05D003671 ORTHO05D004285 1.2e-212 744.2 778 56.2
Thhalv10016251m.g Eutrema salsugineum HOM05D003671 ORTHO05D004285 4.0e-205 719.2 901 51.3
GSVIVG01030211001 Vitis vinifera HOM05D003671 ORTHO05D004285 6.9e-205 718.4 733 58.7
Carub.0004s2047 Capsella rubella HOM05D003671 ORTHO05D004285 8.4e-203 711.4 900 50.2
Oeu060446.2 Olea europaea HOM05D003671 ORTHO05D004285 1.9e-202 710.3 929 50.8
Aa31LG5G23820 Aethionema arabicum HOM05D003671 ORTHO05D004285 1.9e-199 700.3 903 49.6
AT3G51650 Arabidopsis thaliana HOM05D003671 ORTHO05D004285 3.7e-198 696.0 909 48.8
AT3G51640 Arabidopsis thaliana HOM05D003671 ORTHO05D004285 1.1e-197 694.5 882 50.1
Aqoxy2G00724 Aquilegia oxysepala HOM05D003671 ORTHO05D004285 5.3e-197 692.2 914 48.4
Sp4g20820 Schrenkiella parvula HOM05D003671 ORTHO05D004285 6.1e-193 678.7 846 50.9
Psat3g120920 Pisum sativum HOM05D003671 ORTHO05D004285 5.7e-191 672.2 851 49.9
AUR62006358 Chenopodium quinoa HOM05D003671 ORTHO05D004285 6.3e-190 668.7 791 52.6
PSO384G1707 Papaver somniferum HOM05D003671 ORTHO05D004285 4.5e-188 662.5 917 49.3
AL4G35770 Arabidopsis lyrata HOM05D003671 ORTHO05D004285 7.7e-188 661.8 886 48.5
CARHR133180 Cardamine hirsuta HOM05D003671 ORTHO05D004285 1.7e-187 660.6 886 49.5
unitig_699.g19370 Utricularia gibba HOM05D003671 ORTHO05D004285 1.7e-187 660.6 876 50.5
PSO339G1890 Papaver somniferum HOM05D003671 ORTHO05D004285 3.8e-187 659.4 915 48.9
AL5G32090 Arabidopsis lyrata HOM05D003671 ORTHO05D004285 8.5e-187 658.3 889 47.4
BcaB01g00433 Brassica carinata HOM05D003671 ORTHO05D004285 7.9e-185 651.7 879 49.7
A09p44780 Brassica napus HOM05D003671 ORTHO05D004285 1.7e-179 634.0 864 49.5
BraA09t39938Z Brassica rapa HOM05D003671 ORTHO05D004285 1.4e-178 630.9 879 49.0
BcaB01g00498 Brassica carinata HOM05D003671 ORTHO05D004285 1.2e-177 627.9 880 48.9
BolC8t50300H Brassica oleracea HOM05D003671 ORTHO05D004285 3.6e-177 626.3 880 48.8
C08p26840 Brassica napus HOM05D003671 ORTHO05D004285 6.7e-176 622.1 862 49.1
BcaB01g00434 Brassica carinata HOM05D003671 ORTHO05D004285 1.0e-171 608.2 900 47.1
C08p26830 Brassica napus HOM05D003671 ORTHO05D004285 5.5e-170 602.4 880 47.4
BolC8t50298H Brassica oleracea HOM05D003671 ORTHO05D004285 3.0e-168 596.7 905 47.2
MBI03_g38977_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 8.2e-166 588.6 918 45.0
CARHR161250 Cardamine hirsuta HOM05D003671 ORTHO05D004285 3.1e-165 586.6 773 50.1
Psat3g121000 Pisum sativum HOM05D003671 ORTHO05D004285 5.0e-163 579.3 764 49.2
A09p44750 Brassica napus HOM05D003671 ORTHO05D004285 3.6e-161 573.2 897 46.4
BraA09t39936Z Brassica rapa HOM05D003671 ORTHO05D004285 3.6e-161 573.2 900 46.3
Peaxi162Scf00732g00447 Petunia axillaris HOM05D003671 ORTHO05D004285 1.5e-159 567.8 888 45.7
TPR.G4425 Trifolium pratense HOM05D003671 ORTHO05D004285 2.4e-157 560.5 769 48.1
PSO541G0005 Papaver somniferum HOM05D003671 ORTHO05D004285 2.1e-153 547.4 848 46.0
Lsat_1_v5_gn_8_119680 Lactuca sativa HOM05D003671 ORTHO05D004285 2.2e-150 537.3 748 48.7
PSO675G2859 Papaver somniferum HOM05D003671 ORTHO05D004285 9.2e-149 531.9 851 45.6
ECA236G1062 Erigeron canadensis HOM05D003671 ORTHO05D004285 6.4e-142 509.2 908 44.2
HanXRQChr16g0510341 Helianthus annuus HOM05D003671 ORTHO05D004285 2.7e-132 477.2 754 48.0
Sed0014254 Sechium edule HOM05D003671 ORTHO05D004285 4.9e-126 456.4 459 57.5
HanXRQChr16g0510331 Helianthus annuus HOM05D003671 ORTHO05D004285 1.1e-125 455.3 751 46.2
HPP92_018092 Vanilla planifolia HOM05D003671 ORTHO05D004285 4.7e-121 439.9 914 39.4
Nn5g26901 Nelumbo nucifera HOM05D003671 ORTHO05D004285 5.4e-117 426.4 646 48.0
Zm00001eb195220 Zea mays HOM05D003671 ORTHO05D004285 7.6e-111 406.0 939 39.5
CDE07G1826 Ceratophyllum demersum HOM05D003671 ORTHO05D004285 8.4e-110 402.5 901 36.6
Zm00001eb406310 Zea mays HOM05D003671 ORTHO05D004285 2.5e-106 391.0 931 38.6
Zm00001eb163960 Zea mays HOM05D003671 ORTHO05D004285 5.6e-106 389.8 937 37.1
SpUn1372_0010 Schrenkiella parvula HOM05D003671 ORTHO05D004285 2.1e-105 387.9 406 56.9
CDE04G0380 Ceratophyllum demersum HOM05D003671 ORTHO05D004285 2.0e-103 381.3 789 38.5
Os11g0113200 Oryza sativa ssp. japonica HOM05D003671 ORTHO05D004285 8.1e-97 359.4 919 36.9
Os12g0112600 Oryza sativa ssp. japonica HOM05D003671 ORTHO05D004285 1.2e-95 355.5 927 36.8
HPP92_022854 Vanilla planifolia HOM05D003671 ORTHO05D004654 2.7e-92 344.4 933 34.4
ATR0012G011 Amborella trichopoda HOM05D003671 ORTHO05D004285 1.8e-88 331.6 886 36.3
SEGI_37069 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 7.9e-84 316.2 1011 32.6
ATR0681G108 Amborella trichopoda HOM05D003671 ORTHO05D004285 7.4e-82 309.7 422 50.9
Oeu060441.1 Olea europaea HOM05D003671 ORTHO05D004285 3.6e-76 290.8 355 48.5
Oeu026958.1 Olea europaea HOM05D003671 ORTHO05D004285 4.5e-71 273.9 506 42.1
AagrBONN_evm.TU.Sc2ySwM_344.630 Anthoceros agrestis HOM05D003671 ORTHO05D004285 3.7e-65 254.2 379 45.6
VMungo1383G0904 Vigna mungo HOM05D003671 ORTHO05D004285 5.3e-64 250.4 309 47.2
Mapoly0100s0047 Marchantia polymorpha HOM05D003671 ORTHO05D004285 8.5e-62 243.0 357 44.0
CAN.G179.38 Capsicum annuum HOM05D003671 ORTHO05D004285 3.0e-59 234.6 258 53.9
SEGI_27030 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 6.7e-59 233.4 294 46.6
SEGI_23390 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 3.6e-52 211.1 910 30.3
Pp3c12_1780 Physcomitrium patens HOM05D003671 ORTHO05D004285 4.0e-51 207.6 485 36.1
Sp5g10620 Schrenkiella parvula HOM05D003671 ORTHO05D004285 2.8e-49 201.4 345 40.0
SEGI_38845 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 9.1e-48 196.4 794 29.6
Haze_23239 Corylus avellana HOM05D003671 ORTHO05D004285 1.2e-47 196.1 262 54.6
Sc02g0000840 Simmondsia chinensis HOM05D003671 ORTHO05D004285 2.7e-44 184.9 288 41.3
SEGI_35920 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 1.8e-43 182.2 141 61.7
TPR.G35754 Trifolium pratense HOM05D003671 ORTHO05D004285 5.7e-42 177.2 97 93.8
MBI03_g10316_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 1.7e-38 165.6 109 74.3
ATR0681G103 Amborella trichopoda HOM05D003671 ORTHO05D004285 7.3e-21 107.1 177 39.5
unitig_27.g24881 Utricularia gibba HOM05D003671 ORTHO05D004285 4.6e-07 61.2 65 49.2
SEGI_26240 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 2.3e-06 58.9 486 23.3


User provided reference genes

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