Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031404 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 2.7e-174 615.1 294 100.0
Rhsim03G0239000 Rhododendron simsii HOM05D004971 ORTHO05D006289 1.8e-125 453.0 267 79.0
Dinv41645 Davidia involucrata HOM05D004971 ORTHO05D006289 8.8e-125 450.7 267 77.2
Actinidia32663 Actinidia chinensis HOM05D004971 ORTHO05D006289 5.0e-120 434.9 285 75.1
CSS0049746 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 3.1e-114 415.6 196 100.0
vmacro06238 Vaccinium macrocarpon HOM05D004971 ORTHO05D006289 4.2e-111 405.2 304 64.8
MSTRG.19566 Avicennia marina HOM05D004971 ORTHO05D006289 2.3e-109 399.4 275 66.9
Oeu000366.2 Olea europaea HOM05D004971 ORTHO05D006289 6.3e-107 391.3 308 64.6
GSVIVG01015340001 Vitis vinifera HOM05D004971 ORTHO05D006289 2.4e-106 389.4 286 65.0
SGA_v2.0_scaffold22G09903 Striga asiatica HOM05D004971 ORTHO05D006289 3.5e-105 385.6 276 65.9
SGA_v2.0_scaffold20G09148 Striga asiatica HOM05D004971 ORTHO05D006289 1.5e-103 380.2 295 62.7
ECA240G1764 Erigeron canadensis HOM05D004971 ORTHO05D006289 1.8e-101 373.2 284 62.0
HanXRQChr09g0239411 Helianthus annuus HOM05D004971 ORTHO05D006289 1.5e-100 370.2 291 61.5
Nitab4.5_0003331g0010 Nicotiana tabacum HOM05D004971 ORTHO05D006289 2.6e-100 369.4 267 63.3
Migut.J01131 Erythranthe guttata HOM05D004971 ORTHO05D006289 3.4e-100 369.0 268 63.8
Nitab4.5_0000066g0130 Nicotiana tabacum HOM05D004971 ORTHO05D006289 2.2e-99 366.3 271 62.4
RcHm_v2.0_Chr2g0091361 Rosa chinensis HOM05D004971 ORTHO05D006289 6.4e-99 364.8 273 65.9
Prupe.7G224700 Prunus persica HOM05D004971 ORTHO05D006289 5.4e-98 361.7 286 61.5
Sopen05g028390 Solanum pennellii HOM05D004971 ORTHO05D006289 1.6e-97 360.1 270 61.9
CiPaw.03G227700 Carya illinoinensis HOM05D004971 ORTHO05D006289 3.5e-97 359.0 269 66.5
Glyma.08G035500 Glycine max HOM05D004971 ORTHO05D006289 5.9e-97 358.2 275 64.0
Lalb_Chr05g0223101 Lupinus albus HOM05D004971 ORTHO05D006289 5.9e-97 358.2 270 63.0
CANSAT56G2306 Cannabis sativa HOM05D004971 ORTHO05D006289 1.0e-96 357.5 301 60.5
Cc06_g10130 Coffea canephora HOM05D004971 ORTHO05D006289 1.0e-96 357.5 265 65.3
CANSAT56G1645 Cannabis sativa HOM05D004971 ORTHO05D006289 2.3e-96 356.3 284 62.0
Solyc05g050000.3 Solanum lycopersicum HOM05D004971 ORTHO05D006289 3.3e-95 352.4 295 57.6
Phvul.002G310900 Phaseolus vulgaris HOM05D004971 ORTHO05D006289 4.7e-94 348.6 290 62.1
VMungo0251G3379 Vigna mungo HOM05D004971 ORTHO05D006289 2.3e-93 346.3 275 62.2
QL01p004043 Quercus lobata HOM05D004971 ORTHO05D006289 3.1e-93 345.9 274 62.0
Lj4g0001585 Lotus japonicus HOM05D004971 ORTHO05D006289 8.9e-93 344.4 267 62.2
Lsat_1_v5_gn_7_41360 Lactuca sativa HOM05D004971 ORTHO05D006289 1.2e-92 344.0 295 57.6
TAR626G1908 Trochodendron aralioides HOM05D001382 ORTHO05D006289 1.2e-92 344.0 289 59.9
AT5G51130 Arabidopsis thaliana HOM05D004971 ORTHO05D006289 4.4e-92 342.0 271 62.4
Thecc.09G104800 Theobroma cacao HOM05D004971 ORTHO05D006289 4.4e-92 342.0 277 59.6
TAR636G2606 Trochodendron aralioides HOM05D004971 ORTHO05D006289 4.4e-92 342.0 287 59.6
Lj7A659G31 Lonicera japonica HOM05D004971 ORTHO05D006289 9.8e-92 340.9 253 64.8
unitig_748.g8739 Utricularia gibba HOM05D004971 ORTHO05D006289 9.8e-92 340.9 270 59.3
Carub.0008s1117 Capsella rubella HOM05D004971 ORTHO05D006289 2.9e-91 339.3 273 61.2
Peaxi162Scf00539g00614 Petunia axillaris HOM05D004971 ORTHO05D006289 2.9e-91 339.3 286 57.3
Oeu017816.1 Olea europaea HOM05D004971 ORTHO05D006289 6.4e-91 338.2 240 65.0
FAN26G3039 Fragaria x ananassa HOM05D001382 ORTHO05D001266 8.3e-91 337.8 266 63.2
FvH4_1g05710 Fragaria vesca HOM05D004971 ORTHO05D006289 1.1e-90 337.4 267 62.9
FAN28G1806 Fragaria x ananassa HOM05D001382 ORTHO05D006289 2.4e-90 336.3 266 63.2
Sc08g0007770 Simmondsia chinensis HOM05D004971 ORTHO05D006289 4.1e-90 335.5 298 56.7
AL8G25390 Arabidopsis lyrata HOM05D004971 ORTHO05D006289 5.4e-90 335.1 290 59.0
FAN23G0317 Fragaria x ananassa HOM05D001382 ORTHO05D006289 7.0e-90 334.7 268 62.3
AUR62021639 Chenopodium quinoa HOM05D004971 ORTHO05D006289 4.6e-89 332.0 273 58.6
TPR.G23453 Trifolium pratense HOM05D004971 ORTHO05D006289 7.8e-89 331.3 292 58.2
Potri.018G084700 Populus trichocarpa HOM05D004971 ORTHO05D006289 1.0e-88 330.9 284 58.8
Atru.chr7.1418 Acer truncatum HOM05D004971 ORTHO05D006289 1.3e-88 330.5 286 60.5
Nn3g18146 Nelumbo nucifera HOM05D004971 ORTHO05D006289 1.3e-88 330.5 287 58.5
FAN19G1252 Fragaria x ananassa HOM05D001382 ORTHO05D001266 3.9e-88 328.9 266 62.4
Sabra18G0073100 Salix brachista HOM05D004971 ORTHO05D006289 3.9e-88 328.9 269 59.9
THA.LOC104811095 Tarenaya hassleriana HOM05D004971 ORTHO05D006289 5.0e-88 328.6 283 59.4
Aa31LG3G7640 Aethionema arabicum HOM05D004971 ORTHO05D006289 8.6e-88 327.8 283 58.7
CARHR256940 Cardamine hirsuta HOM05D004971 ORTHO05D006289 8.6e-88 327.8 271 59.0
Medtr8g102950 Medicago truncatula HOM05D004971 ORTHO05D006289 1.1e-87 327.4 291 57.4
PGSC0003DMG400021659 Solanum tuberosum HOM05D004971 ORTHO05D006289 1.9e-87 326.6 338 48.8
Aqoxy7G01513 Aquilegia oxysepala HOM05D004971 ORTHO05D006289 2.5e-87 326.2 282 58.9
Thhalv10014188m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 2.5e-87 326.2 266 59.8
Hund26242 Selenicereus undatus HOM05D004971 ORTHO05D006289 2.5e-87 326.2 275 57.8
MD15G1192600 Malus domestica HOM05D004971 ORTHO05D006289 7.3e-87 324.7 284 57.4
arahy.Tifrunner.gnm1.ann1.050WC1 Arachis hypogaea HOM05D004971 ORTHO05D006289 1.6e-86 323.6 293 56.0
CAN.G399.3 Capsicum annuum HOM05D004971 ORTHO05D006289 6.2e-86 321.6 264 58.7
C03p19180 Brassica napus HOM05D004971 ORTHO05D006289 1.8e-85 320.1 283 57.2
ClCG06G008900 Citrullus lanatus HOM05D004971 ORTHO05D006289 5.2e-85 318.5 279 57.3
BcaC03g14623 Brassica carinata HOM05D004971 ORTHO05D006289 6.8e-85 318.2 261 59.4
BolC2t08195H Brassica oleracea HOM05D004971 ORTHO05D006289 6.8e-85 318.2 261 59.4
BcaC01g06098 Brassica carinata HOM05D004971 ORTHO05D006289 2.0e-84 316.6 267 58.4
BolC3t14306H Brassica oleracea HOM05D004971 ORTHO05D006289 2.0e-84 316.6 267 58.4
PGR102G0147 Punica granatum HOM05D004971 ORTHO05D006289 2.0e-84 316.6 260 58.8
A02p12480 Brassica napus HOM05D004971 ORTHO05D006289 3.4e-84 315.8 263 59.3
BraA02t06311Z Brassica rapa HOM05D004971 ORTHO05D006289 3.4e-84 315.8 263 59.3
Gorai.001G007500 Gossypium raimondii HOM05D004971 ORTHO05D006289 4.4e-84 315.5 292 53.8
Sp6g13340 Schrenkiella parvula HOM05D004971 ORTHO05D006289 5.8e-84 315.1 265 58.9
C02p20580 Brassica napus HOM05D004971 ORTHO05D006289 7.5e-84 314.7 261 59.0
Psat7g014440 Pisum sativum HOM05D004971 ORTHO05D006289 1.7e-83 313.5 276 59.1
BcaC01g06076 Brassica carinata HOM05D004971 ORTHO05D006289 2.2e-83 313.2 266 57.9
Gohir.D07G007800 Gossypium hirsutum HOM05D004971 ORTHO05D006289 2.2e-83 313.2 292 53.4
PSO675G4950 Papaver somniferum HOM05D004971 ORTHO05D006289 2.2e-83 313.2 284 56.7
COL.COLO4_34800 Corchorus olitorius HOM05D004971 ORTHO05D006289 6.4e-83 311.6 245 62.4
Eucgr.C03795 Eucalyptus grandis HOM05D004971 ORTHO05D006289 8.3e-83 311.2 278 54.7
BcaB05g24018 Brassica carinata HOM05D004971 ORTHO05D006289 1.1e-82 310.8 264 59.8
Gohir.A07G004400 Gossypium hirsutum HOM05D004971 ORTHO05D006289 1.1e-82 310.8 297 53.2
arahy.Tifrunner.gnm1.ann1.R8N6MQ Arachis hypogaea HOM05D004971 ORTHO05D006289 1.4e-82 310.5 293 53.9
A03p16290 Brassica napus HOM05D004971 ORTHO05D006289 1.4e-82 310.5 266 58.3
BraA03t10920Z Brassica rapa HOM05D004971 ORTHO05D006289 5.4e-82 308.5 267 56.6
PSO541G6366 Papaver somniferum HOM05D004971 ORTHO05D006289 1.2e-81 307.4 288 55.6
HanXRQChr03g0061421 Helianthus annuus HOM05D004971 ORTHO05D006289 1.7e-80 303.5 251 57.0
HPP92_012921 Vanilla planifolia HOM05D004971 ORTHO05D006289 1.6e-78 297.0 282 53.2
TWI12G1172 Tripterygium wilfordii HOM05D004971 ORTHO05D006289 4.7e-78 295.4 271 54.6
Os08g0540500 Oryza sativa ssp. japonica HOM05D004971 ORTHO05D006289 3.1e-77 292.7 266 51.9
HPP92_012900 Vanilla planifolia HOM05D004971 ORTHO05D006289 1.5e-76 290.4 281 52.0
DCAR_028679 Daucus carota HOM05D004971 ORTHO05D006289 3.4e-76 289.3 278 55.4
CsaV3_1G020790 Cucumis sativus L. HOM05D004971 ORTHO05D006289 4.4e-76 288.9 288 52.4
AUR62008451 Chenopodium quinoa HOM05D004971 ORTHO05D006289 5.8e-76 288.5 253 55.3
Cfa003218 Carpinus fangiana HOM05D001382 ORTHO05D001266 2.2e-75 286.6 223 63.7
SHI02711 Sapria himalayana HOM05D004971 ORTHO05D006289 6.0e-73 278.5 292 51.7
Sed0000382 Sechium edule HOM05D004971 ORTHO05D006289 1.3e-72 277.3 256 56.6
Ciclev10009268m.g Citrus clementina HOM05D004971 ORTHO05D006289 1.7e-72 276.9 287 53.0
MELO3C024707.2 Cucumis melo HOM05D004971 ORTHO05D006289 3.9e-72 275.8 270 54.1
AagrBONN_evm.TU.Sc2ySwM_117.3390 Anthoceros agrestis HOM05D004971 ORTHO05D006289 1.1e-71 274.2 268 49.3
Manes.16G112100 Manihot esculenta HOM05D004971 ORTHO05D006289 9.6e-71 271.2 214 60.3
SMO232G0003 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 8.4e-67 258.1 275 46.5
SEGI_33858 Sequoiadendron giganteum HOM05D004971 ORTHO05D006289 1.6e-65 253.8 353 40.5
SMO241G0030 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 3.5e-65 252.7 279 45.9
Mapoly0002s0233 Marchantia polymorpha HOM05D004971 ORTHO05D006289 2.3e-64 250.0 301 43.2
CDE11G0552 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 1.9e-63 246.9 270 49.3
Nitab4.5_0002165g0080 Nicotiana tabacum HOM05D004971 ORTHO05D006289 9.6e-63 244.6 273 48.0
Lalb_Chr14g0371731 Lupinus albus HOM05D004971 ORTHO05D006289 3.6e-62 242.7 255 47.5
Duzib150G1337 Durio zibethinus HOM05D004971 ORTHO05D006289 6.0e-57 225.3 196 58.7
Thhalv10006518m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 4.9e-51 205.7 220 50.0
Thhalv10027230m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 4.9e-51 205.7 220 50.0
Pp3c17_15270 Physcomitrium patens HOM05D004971 ORTHO05D006289 1.4e-50 204.1 302 37.4
Thhalv10027410m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 1.6e-49 200.7 220 47.7
Thhalv10026861m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 4.6e-49 199.1 220 47.7
Thhalv10027350m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 3.9e-48 196.1 230 46.1
ATR0315G075 Amborella trichopoda HOM05D004971 ORTHO05D006289 5.6e-47 192.2 209 49.3
Ca_17315_v3 Cicer arietinum L. HOM05D004971 ORTHO05D006289 2.0e-44 183.7 186 51.6
Lalb_Chr24g0397391 Lupinus albus HOM05D004971 ORTHO05D006289 2.6e-44 183.3 192 45.3
CBR_g687 Chara braunii HOM05D004971 ORTHO05D006289 8.4e-43 178.3 438 29.5
MD02G1058100 Malus domestica HOM05D004971 ORTHO05D006289 1.1e-42 177.9 250 39.2
CDE05G3470 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 5.5e-42 175.6 124 69.4
CSS0032398 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 1.8e-40 170.6 82 100.0
MCO09G154 Micromonas commoda HOM05D004971 ORTHO05D006289 4.3e-39 166.0 288 35.4
Haze_02526 Corylus avellana HOM05D004971 ORTHO05D006289 2.0e-36 157.1 177 49.7
EL10Ac8g18422 Beta vulgaris HOM05D004971 ORTHO05D006289 3.4e-36 156.4 134 57.5
Haze_02523 Corylus avellana HOM05D004971 ORTHO05D006289 6.1e-33 145.6 152 52.6
Cre15.g636450 Chlamydomonas reinhardtii HOM05D004971 ORTHO05D006289 3.7e-30 136.3 381 26.5
Zm00001eb198370 Zea mays HOM05D004971 ORTHO05D006289 6.3e-30 135.6 189 44.4
PRCOL_00000240 Prasinoderma coloniale HOM05D004971 ORTHO05D006289 5.9e-28 129.0 332 28.9
arahy.Tifrunner.gnm1.ann1.D57MTL Arachis hypogaea HOM05D004971 ORTHO05D006289 5.5e-26 122.5 146 44.5
MBI04_g02609_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D000022 7.2e-26 122.1 143 47.6
arahy.Tifrunner.gnm1.ann1.2J0XRF Arachis hypogaea HOM05D004971 ORTHO05D006289 2.0e-23 114.0 146 40.4
Lj4g0009518 Lotus japonicus HOM05D004971 ORTHO05D006289 3.3e-23 113.2 76 65.8
Lalb_Chr24g0397371 Lupinus albus HOM05D004971 ORTHO05D006289 4.8e-22 109.4 141 44.0
Cpa.g.sc40.24 Carica papaya HOM05D004971 ORTHO05D006289 5.3e-21 105.9 56 80.4
Actinidia07401 Actinidia chinensis HOM05D004971 ORTHO05D006289 2.9e-19 100.1 57 80.7
Nitab4.5_0001706g0070 Nicotiana tabacum HOM05D004971 ORTHO05D006289 1.2e-17 94.7 87 54.0
Nitab4.5_0002165g0090 Nicotiana tabacum HOM05D004971 ORTHO05D006289 1.1e-15 88.2 58 62.1
MBI19_g42779_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 7.4e-15 85.5 168 34.5
MBI19_g24589_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 2.5e-10 70.5 63 57.1
FvH4_7g02480 Fragaria vesca HOM05D004971 ORTHO05D022553 5.2e-08 62.8 38 71.1
FvH4_7g02600 Fragaria vesca HOM05D004971 ORTHO05D022553 5.2e-08 62.8 38 71.1
MBI19_g24592_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 8.8e-08 62.0 38 63.2
CiPaw.05G218700 Carya illinoinensis HOM05D004971 ORTHO05D006289 8.2e-06 55.5 42 59.5
Nitab4.5_0001706g0080 Nicotiana tabacum HOM05D004971 ORTHO05D006289 8.2e-06 55.5 29 72.4


User provided reference genes

Program Settings