Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031359 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 4.1e-122 441.4 223 100.0
CSS0017832 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 4.5e-121 438.0 223 99.6
Rhsim06G0085800 Rhododendron simsii HOM05D004520 ORTHO05D005520 5.6e-23 112.1 167 46.1
Gorai.010G044800 Gossypium raimondii HOM05D004520 ORTHO05D005520 2.6e-20 103.2 140 45.7
TWI12G0901 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 2.6e-20 103.2 115 49.6
Gohir.D06G040100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 4.5e-20 102.4 130 48.5
Peaxi162Scf00160g01523 Petunia axillaris HOM05D004520 ORTHO05D005520 7.6e-20 101.7 135 45.9
Gohir.A06G039100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.7e-19 100.5 131 48.1
Potri.002G092000 Populus trichocarpa HOM05D004520 ORTHO05D005520 1.1e-18 97.8 143 43.4
MD08G1176500 Malus domestica HOM05D004520 ORTHO05D005520 1.4e-18 97.4 120 47.5
TWI56G1051 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 2.4e-18 96.7 147 43.5
Duzib093G1357 Durio zibethinus HOM05D004520 ORTHO05D005520 3.2e-18 96.3 151 41.7
Sabra05G0127200 Salix brachista HOM05D004520 ORTHO05D005520 3.2e-18 96.3 166 41.6
CiPaw.06G022900 Carya illinoinensis HOM05D004520 ORTHO05D005520 4.2e-18 95.9 132 46.2
Dinv44735 Davidia involucrata HOM05D004520 ORTHO05D005520 4.2e-18 95.9 115 47.8
Prupe.1G510900 Prunus persica HOM05D004520 ORTHO05D005520 9.3e-18 94.7 161 41.6
Potri.005G166900 Populus trichocarpa HOM05D004520 ORTHO05D005520 2.1e-17 93.6 151 44.4
PGR042G0053 Punica granatum HOM05D004520 ORTHO05D005520 3.5e-17 92.8 123 48.0
QL12p035753 Quercus lobata HOM05D004520 ORTHO05D005520 4.6e-17 92.4 162 41.4
Actinidia10294 Actinidia chinensis HOM05D004520 ORTHO05D005520 1.0e-16 91.3 126 46.8
Ca_05234_v3 Cicer arietinum L. HOM05D004520 ORTHO05D005520 1.0e-16 91.3 123 43.1
Cc00_g24440 Coffea canephora HOM05D004520 ORTHO05D005520 1.0e-16 91.3 155 40.0
Cfa015929 Carpinus fangiana HOM05D004520 ORTHO05D005520 1.3e-16 90.9 180 35.6
FvH4_5g38140 Fragaria vesca HOM05D004520 ORTHO05D000031 1.3e-16 90.9 120 47.5
FAN18G4472 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.3e-16 90.9 120 47.5
MD15G1363200 Malus domestica HOM05D004520 ORTHO05D005520 1.3e-16 90.9 119 46.2
Haze_00561 Corylus avellana HOM05D004520 ORTHO05D005520 1.8e-16 90.5 120 45.0
Duzib041G0092 Durio zibethinus HOM05D004520 ORTHO05D005520 2.3e-16 90.1 166 41.6
COL.COLO4_16491 Corchorus olitorius HOM05D004520 ORTHO05D005520 3.0e-16 89.7 130 45.4
FAN08G3230 Fragaria x ananassa HOM05D004520 ORTHO05D005520 3.9e-16 89.4 117 48.7
RcHm_v2.0_Chr7g0240121 Rosa chinensis HOM05D004520 ORTHO05D005520 3.9e-16 89.4 141 44.0
Duzib041G0365 Durio zibethinus HOM05D004520 ORTHO05D005520 6.7e-16 88.6 167 41.3
Lsat_1_v5_gn_9_44740 Lactuca sativa HOM05D004520 ORTHO05D005520 1.9e-15 87.0 129 42.6
Carub.0001s2166 Capsella rubella HOM05D004520 ORTHO05D005520 2.5e-15 86.7 119 45.4
Thecc.08G113300 Theobroma cacao HOM05D004520 ORTHO05D005520 2.5e-15 86.7 169 40.8
BcaB03g14234 Brassica carinata HOM05D004520 ORTHO05D005520 3.3e-15 86.3 118 45.8
CARHR022460 Cardamine hirsuta HOM05D004520 ORTHO05D005520 3.3e-15 86.3 120 45.8
Peaxi162Scf00168g00043 Petunia axillaris HOM05D004520 ORTHO05D005520 3.3e-15 86.3 201 37.3
Duzib116G0626 Durio zibethinus HOM05D004520 ORTHO05D005520 4.3e-15 85.9 165 41.2
Oeu024567.1 Olea europaea HOM05D004520 ORTHO05D005520 4.3e-15 85.9 179 36.9
BcaB07g32230 Brassica carinata HOM05D004520 ORTHO05D005520 5.6e-15 85.5 119 46.2
A07p14760 Brassica napus HOM05D004520 ORTHO05D005520 9.6e-15 84.7 157 39.5
FAN13G2359 Fragaria x ananassa HOM05D004520 ORTHO05D005520 9.6e-15 84.7 161 40.4
FAN04G1722 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.6e-14 84.0 149 40.9
Manes.02G156600 Manihot esculenta HOM05D004520 ORTHO05D005520 2.1e-14 83.6 160 39.4
Glyma.14G168100 Glycine max HOM05D004520 ORTHO05D005520 3.7e-14 82.8 118 41.5
Psat2g075760 Pisum sativum HOM05D004520 ORTHO05D005520 3.7e-14 82.8 121 44.6
BolC7t42702H Brassica oleracea HOM05D004520 ORTHO05D005520 4.8e-14 82.4 141 40.4
CiPaw.05G232200 Carya illinoinensis HOM05D004520 ORTHO05D005520 4.8e-14 82.4 243 30.0
Gohir.D05G269800 Gossypium hirsutum HOM05D004520 ORTHO05D005520 4.8e-14 82.4 128 46.9
Lj1g0026094 Lotus japonicus HOM05D004520 ORTHO05D005520 4.8e-14 82.4 171 37.4
Aa31LG7G6090 Aethionema arabicum HOM05D004520 ORTHO05D005520 6.2e-14 82.0 118 44.9
AL1G35550 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 6.2e-14 82.0 140 43.6
Lalb_Chr10g0102151 Lupinus albus HOM05D004520 ORTHO05D005520 8.1e-14 81.6 104 46.2
Ciclev10003829m.g Citrus clementina HOM05D004520 ORTHO05D005520 1.1e-13 81.3 130 40.8
Nitab4.5_0006678g0010 Nicotiana tabacum HOM05D004520 ORTHO05D005520 1.1e-13 81.3 130 40.0
Atru.chr13.1276 Acer truncatum HOM05D004520 ORTHO05D005520 1.4e-13 80.9 132 42.4
BcaB03g11898 Brassica carinata HOM05D003425 ORTHO05D003897 1.4e-13 80.9 114 44.7
Manes.18G070900 Manihot esculenta HOM05D004520 ORTHO05D005520 1.4e-13 80.9 103 43.7
AT1G22110 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 1.8e-13 80.5 136 41.9
Prupe.1G552400 Prunus persica HOM05D004520 ORTHO05D005520 1.8e-13 80.5 120 43.3
C07p21720 Brassica napus HOM05D004520 ORTHO05D005520 2.4e-13 80.1 112 46.4
arahy.Tifrunner.gnm1.ann1.1581IW Arachis hypogaea HOM05D004520 ORTHO05D005520 4.0e-13 79.3 111 44.1
BraA07t29221Z Brassica rapa HOM05D004520 ORTHO05D005520 5.3e-13 79.0 164 39.0
A09p42670 Brassica napus HOM05D004520 ORTHO05D005520 6.9e-13 78.6 172 38.4
BraA09t39742Z Brassica rapa HOM05D004520 ORTHO05D005520 6.9e-13 78.6 172 38.4
Gohir.A05G268200 Gossypium hirsutum HOM05D004520 ORTHO05D005520 6.9e-13 78.6 125 45.6
C05p21170 Brassica napus HOM05D004520 ORTHO05D005520 1.5e-12 77.4 170 39.4
BolC5t30811H Brassica oleracea HOM05D004520 ORTHO05D005520 1.5e-12 77.4 170 39.4
Gorai.009G282400 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.5e-12 77.4 128 44.5
MD15G1408400 Malus domestica HOM05D004520 ORTHO05D005520 1.5e-12 77.4 149 40.9
BcaC05g26135 Brassica carinata HOM05D004520 ORTHO05D005520 2.0e-12 77.0 181 37.6
BolC8t49777H Brassica oleracea HOM05D004520 ORTHO05D005520 2.0e-12 77.0 145 39.3
BcaC06g34928 Brassica carinata HOM05D004520 ORTHO05D005520 2.6e-12 76.6 148 39.9
CANSAT25G0040 Cannabis sativa HOM05D004520 ORTHO05D005520 2.6e-12 76.6 118 42.4
CANSAT25G0424 Cannabis sativa HOM05D004520 ORTHO05D005520 2.6e-12 76.6 119 42.0
Medtr5g061650 Medicago truncatula HOM05D004520 ORTHO05D005520 2.6e-12 76.6 118 41.5
Phvul.008G170000 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 2.6e-12 76.6 86 47.7
BcaC07g39145 Brassica carinata HOM05D003425 ORTHO05D003897 3.4e-12 76.3 130 43.8
CDE10G0363 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 3.4e-12 76.3 162 35.2
arahy.Tifrunner.gnm1.ann1.8K5I59 Arachis hypogaea HOM05D004520 ORTHO05D005520 4.5e-12 75.9 128 40.6
Gorai.009G240500 Gossypium raimondii HOM05D004520 ORTHO05D005520 4.5e-12 75.9 157 36.3
MD08G1219800 Malus domestica HOM05D004520 ORTHO05D005520 4.5e-12 75.9 71 57.7
Sopen04g028850 Solanum pennellii HOM05D004520 ORTHO05D005520 7.6e-12 75.1 94 45.7
Gohir.A05G230000 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.0e-11 74.7 152 35.5
MELO3C022816.2 Cucumis melo HOM05D004520 ORTHO05D005520 1.3e-11 74.3 97 47.4
TPR.G39080 Trifolium pratense HOM05D004520 ORTHO05D005520 1.3e-11 74.3 116 43.1
Gohir.D05G232300 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.2e-11 73.6 168 35.1
SalBow6G4633 Salvia bowleyana HOM05D004520 ORTHO05D005520 2.2e-11 73.6 115 42.6
Solyc04g072650.1 Solanum lycopersicum HOM05D004520 ORTHO05D005520 2.2e-11 73.6 83 50.6
AT1G77932 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 2.9e-11 73.2 76 52.6
MBI02_g37831_MAGBIO Magnolia biondii HOM05D004520 ORTHO05D005520 2.9e-11 73.2 80 50.0
Gohir.D02G082633 Gossypium hirsutum HOM05D004520 ORTHO05D005520 4.9e-11 72.4 112 45.5
unitig_578.g16210 Utricularia gibba HOM05D004520 ORTHO05D005520 4.9e-11 72.4 103 41.7
CDE10G1290 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 6.5e-11 72.0 157 35.7
PGSC0003DMG400027533 Solanum tuberosum HOM05D004520 ORTHO05D005520 1.1e-10 71.2 119 42.9
Nitab4.5_0002534g0030 Nicotiana tabacum HOM05D004520 ORTHO05D005520 1.4e-10 70.9 107 43.0
CsaV3_5G023810 Cucumis sativus L. HOM05D004520 ORTHO05D005520 1.9e-10 70.5 115 43.5
CARHR071410 Cardamine hirsuta HOM05D004520 ORTHO05D005520 2.5e-10 70.1 112 44.6
Gohir.A02G075405 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.5e-10 70.1 111 43.2
Gorai.005G092700 Gossypium raimondii HOM05D004520 ORTHO05D005520 3.2e-10 69.7 115 44.3
PSO210G7148 Papaver somniferum HOM05D004520 ORTHO05D005520 3.2e-10 69.7 64 54.7
PSO447G0143 Papaver somniferum HOM05D004520 ORTHO05D005520 3.2e-10 69.7 64 54.7
Prupe.1G096600 Prunus persica HOM05D004520 ORTHO05D005520 3.2e-10 69.7 75 50.7
Migut.C00189 Erythranthe guttata HOM05D004520 ORTHO05D005520 4.2e-10 69.3 120 35.8
Carub.0002s2483 Capsella rubella HOM05D004520 ORTHO05D005520 5.5e-10 68.9 98 39.8
ClCG03G008910 Citrullus lanatus HOM05D004520 ORTHO05D005520 5.5e-10 68.9 72 51.4
SalBow6G1129 Salvia bowleyana HOM05D004520 ORTHO05D005520 5.5e-10 68.9 138 39.1
Prupe.1G510300 Prunus persica HOM05D004520 ORTHO05D005520 7.1e-10 68.6 120 37.5
Glyma.13G086100 Glycine max HOM05D004520 ORTHO05D005520 1.2e-09 67.8 89 42.7
CAN.G535.13 Capsicum annuum HOM05D004520 ORTHO05D005520 1.6e-09 67.4 53 62.3
ATR0564G398 Amborella trichopoda HOM05D004520 ORTHO05D005520 2.1e-09 67.0 48 60.4
MD15G1409900 Malus domestica HOM05D004520 ORTHO05D005520 2.7e-09 66.6 142 38.0
Sed0005622 Sechium edule HOM05D004520 ORTHO05D005520 2.7e-09 66.6 78 46.2
Thecc.08G113500 Theobroma cacao HOM05D004520 ORTHO05D005520 4.6e-09 65.9 182 33.5
Actinidia10293 Actinidia chinensis HOM05D001087 ORTHO05D005520 6.0e-09 65.5 161 36.6
Migut.N02919 Erythranthe guttata HOM05D004520 ORTHO05D005520 6.0e-09 65.5 148 36.5
Phvul.009G027500 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 7.9e-09 65.1 57 56.1
Potri.005G169900 Populus trichocarpa HOM05D004520 ORTHO05D005520 7.9e-09 65.1 142 37.3
ECA232G0105 Erigeron canadensis HOM05D004520 ORTHO05D005520 2.3e-08 63.5 95 41.1
FAN18G1022 Fragaria x ananassa HOM05D004520 ORTHO05D005520 2.3e-08 63.5 118 36.4
Sabra05G0127300 Salix brachista HOM05D004520 ORTHO05D005520 2.3e-08 63.5 131 35.9
FAN04G0088 Fragaria x ananassa HOM05D004520 ORTHO05D005520 3.0e-08 63.2 117 37.6
Aqoxy6G00530 Aquilegia oxysepala HOM05D004520 ORTHO05D005520 3.9e-08 62.8 73 46.6
AL2G38200 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 3.9e-08 62.8 67 50.7
FAN08G0369 Fragaria x ananassa HOM05D004520 ORTHO05D005520 5.1e-08 62.4 118 36.4
Manes.02G156700 Manihot esculenta HOM05D004520 ORTHO05D005520 6.7e-08 62.0 139 36.7
FvH4_5g38160 Fragaria vesca HOM05D004520 ORTHO05D005520 8.7e-08 61.6 118 35.6
FAN13G0916 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.1e-07 61.2 115 36.5
Lj4P108T23 Lonicera japonica HOM05D004520 ORTHO05D005520 1.1e-07 61.2 109 40.4
QL12p035728 Quercus lobata HOM05D004520 ORTHO05D005520 1.5e-07 60.8 150 35.3
CiPaw.05G232100 Carya illinoinensis HOM05D004520 ORTHO05D005520 1.9e-07 60.5 137 37.2
COL.COLO4_16493 Corchorus olitorius HOM05D004520 ORTHO05D005520 1.9e-07 60.5 154 33.1
Dinv13052 Davidia involucrata HOM05D004520 ORTHO05D005520 1.9e-07 60.5 118 40.7
Atru.chr3.816 Acer truncatum HOM05D004520 ORTHO05D005520 4.3e-07 59.3 125 37.6
TPR.G34 Trifolium pratense HOM05D004520 ORTHO05D005520 4.3e-07 59.3 110 38.2
A08p28610 Brassica napus HOM05D003425 ORTHO05D003897 1.3e-06 57.8 93 40.9
BraA08t34791Z Brassica rapa HOM05D003425 ORTHO05D003897 1.3e-06 57.8 93 40.9
Dinv44734 Davidia involucrata HOM05D001087 ORTHO05D001846 1.3e-06 57.8 133 39.1
SalBow7G1906 Salvia bowleyana HOM05D004520 ORTHO05D005520 4.8e-06 55.8 144 31.9
Sp1g19610 Schrenkiella parvula HOM05D004520 ORTHO05D005520 6.3e-06 55.5 91 40.7
HPP92_006359 Vanilla planifolia HOM05D004622 ORTHO05D005431 8.2e-06 55.1 114 32.5


User provided reference genes

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