Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031357 Camellia sinensis var. sinensis HOM05D007682 ORTHO05D009690 4.0e-40 167.9 102 100.0
CSS0049840 Camellia sinensis var. sinensis HOM05D007682 ORTHO05D009690 3.8e-19 98.2 63 82.5
TAR633G0769 Trochodendron aralioides HOM05D007682 ORTHO05D009690 1.5e-18 96.3 64 79.7
PGR031G1366 Punica granatum HOM05D007682 ORTHO05D009690 2.5e-18 95.5 66 74.2
Dinv30837 Davidia involucrata HOM05D007682 ORTHO05D009690 3.3e-18 95.1 63 79.4
Hma1.2p1_0472F.1_g159680 Hydrangea macrophylla HOM05D007682 ORTHO05D009690 4.3e-18 94.7 63 77.8
Potri.005G023000 Populus trichocarpa HOM05D007682 ORTHO05D009690 4.3e-18 94.7 64 79.7
Haze_04118 Corylus avellana HOM05D007682 ORTHO05D009690 7.3e-18 94.0 66 72.7
Nn4g25761 Nelumbo nucifera HOM05D007682 ORTHO05D009690 9.5e-18 93.6 62 79.0
PSO407G0292 Papaver somniferum HOM05D007682 ORTHO05D009690 1.6e-17 92.8 61 80.3
Glyma.03G234200 Glycine max HOM05D007682 ORTHO05D009690 2.1e-17 92.4 66 72.7
Glyma.19G231600 Glycine max HOM05D007682 ORTHO05D009690 2.1e-17 92.4 66 72.7
Prupe.8G021600 Prunus persica HOM05D007682 ORTHO05D009690 2.1e-17 92.4 64 75.0
PSO170G1207 Papaver somniferum HOM05D007682 ORTHO05D009690 3.6e-17 91.7 61 78.7
Sc16g0008750 Simmondsia chinensis HOM05D000036 ORTHO05D001038 3.6e-17 91.7 62 79.0
Actinidia21502 Actinidia chinensis HOM05D007682 ORTHO05D009690 4.7e-17 91.3 62 77.4
Eucgr.H03256 Eucalyptus grandis HOM05D007682 ORTHO05D009690 4.7e-17 91.3 66 69.7
Gohir.D11G279700 Gossypium hirsutum HOM05D007682 ORTHO05D009690 6.1e-17 90.9 63 76.2
DCAR_022138 Daucus carota HOM05D007682 ORTHO05D009690 8.0e-17 90.5 66 69.7
Gohir.A08G208100 Gossypium hirsutum HOM05D007682 ORTHO05D009690 8.0e-17 90.5 63 74.6
Manes.08G115600 Manihot esculenta HOM05D007682 ORTHO05D009690 8.0e-17 90.5 61 78.7
Phvul.006G088300 Phaseolus vulgaris HOM05D007682 ORTHO05D009690 8.0e-17 90.5 66 71.2
QL03p019528 Quercus lobata HOM05D007682 ORTHO05D009690 8.0e-17 90.5 63 71.4
Gohir.A11G269500 Gossypium hirsutum HOM05D007682 ORTHO05D009690 1.4e-16 89.7 63 74.6
Gorai.007G301900 Gossypium raimondii HOM05D007682 ORTHO05D009690 1.4e-16 89.7 63 74.6
Thecc.05G315600 Theobroma cacao HOM05D007682 ORTHO05D009690 1.4e-16 89.7 63 74.6
FAN20G0672 Fragaria x ananassa HOM05D007682 ORTHO05D009690 1.8e-16 89.4 63 73.0
FAN24G1339 Fragaria x ananassa HOM05D007682 ORTHO05D009690 1.8e-16 89.4 63 73.0
THA.LOC104821730 Tarenaya hassleriana HOM05D007682 ORTHO05D009690 1.8e-16 89.4 62 74.2
GSVIVG01031165001 Vitis vinifera HOM05D000036 ORTHO05D000441 1.8e-16 89.4 61 77.0
AUR62000737 Chenopodium quinoa HOM05D007682 ORTHO05D009690 2.3e-16 89.0 62 74.2
Gohir.D08G224900 Gossypium hirsutum HOM05D007682 ORTHO05D009690 3.0e-16 88.6 62 74.2
Atru.chr2.100 Acer truncatum HOM05D007682 ORTHO05D009690 4.0e-16 88.2 63 74.6
RcHm_v2.0_Chr6g0276771 Rosa chinensis HOM05D007682 ORTHO05D009690 4.0e-16 88.2 63 71.4
Sabra05G0029000 Salix brachista HOM05D007682 ORTHO05D009690 4.0e-16 88.2 62 77.4
THA.LOC104818730 Tarenaya hassleriana HOM05D007682 ORTHO05D009690 4.0e-16 88.2 64 70.3
Gorai.004G238900 Gossypium raimondii HOM05D007682 ORTHO05D009690 5.2e-16 87.8 62 74.2
Oeu010924.1 Olea europaea HOM05D007682 ORTHO05D009690 5.2e-16 87.8 61 75.4
CiPaw.08G159600 Carya illinoinensis HOM05D007682 ORTHO05D009690 6.8e-16 87.4 63 69.8
FAN15G0817 Fragaria x ananassa HOM05D007682 ORTHO05D009690 6.8e-16 87.4 63 71.4
Lsat_1_v5_gn_7_72960 Lactuca sativa HOM05D007682 ORTHO05D009690 6.8e-16 87.4 66 72.7
Os12g0516700 Oryza sativa ssp. japonica HOM05D007682 ORTHO05D009690 6.8e-16 87.4 64 70.3
arahy.Tifrunner.gnm1.ann1.P6132C Arachis hypogaea HOM05D007682 ORTHO05D009690 8.9e-16 87.0 64 70.3
Cfa006654 Carpinus fangiana HOM05D007682 ORTHO05D009690 8.9e-16 87.0 64 70.3
Os12g0554000 Oryza sativa ssp. japonica HOM05D007682 ORTHO05D009690 8.9e-16 87.0 64 70.3
AUR62005227 Chenopodium quinoa HOM05D007682 ORTHO05D009690 1.2e-15 86.7 62 71.0
Peaxi162Scf00037g01515 Petunia axillaris HOM05D007682 ORTHO05D009690 1.5e-15 86.3 61 73.8
Lalb_Chr15g0077471 Lupinus albus HOM05D007682 ORTHO05D009690 2.0e-15 85.9 66 68.2
Cc02_g34370 Coffea canephora HOM05D007682 ORTHO05D009690 2.6e-15 85.5 59 74.6
CDE11G0615 Ceratophyllum demersum HOM05D007682 ORTHO05D009690 3.4e-15 85.1 61 72.1
Psat3g011680 Pisum sativum HOM05D007682 ORTHO05D009690 3.4e-15 85.1 66 68.2
HPP92_010663 Vanilla planifolia HOM05D007682 ORTHO05D009690 3.4e-15 85.1 64 75.0
arahy.Tifrunner.gnm1.ann1.S47DRU Arachis hypogaea HOM05D007682 ORTHO05D009690 4.4e-15 84.7 64 68.8
HanXRQChr11g0340111 Helianthus annuus HOM05D007682 ORTHO05D009690 4.4e-15 84.7 66 69.7
TWI56G1223 Tripterygium wilfordii HOM05D007682 ORTHO05D009690 4.4e-15 84.7 61 70.5
CDE05G1347 Ceratophyllum demersum HOM05D007682 ORTHO05D009690 5.8e-15 84.3 58 74.1
MD10G1017700 Malus domestica HOM05D007682 ORTHO05D009690 5.8e-15 84.3 62 71.0
Nitab4.5_0003113g0070 Nicotiana tabacum HOM05D007682 ORTHO05D009690 5.8e-15 84.3 61 72.1
SEGI_39810 Sequoiadendron giganteum HOM05D007682 ORTHO05D009690 5.8e-15 84.3 59 72.9
TPR.G1619 Trifolium pratense HOM05D007682 ORTHO05D009690 7.5e-15 84.0 66 66.7
CAN.G1273.42 Capsicum annuum HOM05D007682 ORTHO05D009690 1.3e-14 83.2 64 68.8
Duzib177G0692 Durio zibethinus HOM05D007682 ORTHO05D009690 1.3e-14 83.2 59 74.6
ECA236G4368 Erigeron canadensis HOM05D000036 ORTHO05D000441 1.3e-14 83.2 63 68.3
Medtr7g112600 Medicago truncatula HOM05D007682 ORTHO05D009690 1.7e-14 82.8 66 66.7
Migut.N02098 Erythranthe guttata HOM05D007682 ORTHO05D009690 2.2e-14 82.4 61 68.9
Solyc01g099930.3 Solanum lycopersicum HOM05D007682 ORTHO05D009690 2.2e-14 82.4 66 69.7
Sed0011876 Sechium edule HOM05D007682 ORTHO05D009690 2.9e-14 82.0 62 67.7
SGA_v2.0_scaffold81G26104 Striga asiatica HOM05D007682 ORTHO05D009690 2.9e-14 82.0 66 66.7
Hund07111 Selenicereus undatus HOM05D007682 ORTHO05D009690 3.7e-14 81.6 85 58.8
MSTRG.27972 Avicennia marina HOM05D007682 ORTHO05D009690 4.9e-14 81.3 58 70.7
BcaNung04745 Brassica carinata HOM05D007682 ORTHO05D009690 4.9e-14 81.3 59 71.2
SMO367G0406 Selaginella moellendorffii HOM05D007682 ORTHO05D009690 8.3e-14 80.5 66 68.2
A06p37270 Brassica napus HOM05D007682 ORTHO05D009690 1.8e-13 79.3 59 69.5
C07p41180 Brassica napus HOM05D007682 ORTHO05D009690 1.8e-13 79.3 59 69.5
BolC7t44646H Brassica oleracea HOM05D007682 ORTHO05D009690 1.8e-13 79.3 59 69.5
BraA06t26650Z Brassica rapa HOM05D007682 ORTHO05D009690 1.8e-13 79.3 59 69.5
Lj1g0016295 Lotus japonicus HOM05D007682 ORTHO05D009690 4.1e-13 78.2 69 63.8
Sp2g20980 Schrenkiella parvula HOM05D007682 ORTHO05D009690 4.1e-13 78.2 59 67.8
Zm00001eb410110 Zea mays HOM05D007682 ORTHO05D009690 5.4e-13 77.8 63 66.7
CARHR186340 Cardamine hirsuta HOM05D007682 ORTHO05D009690 7.0e-13 77.4 59 67.8
CsaV3_1G038640 Cucumis sativus L. HOM05D007682 ORTHO05D009690 7.0e-13 77.4 61 65.6
Aa31LG11G9610 Aethionema arabicum HOM05D007682 ORTHO05D009690 9.2e-13 77.0 59 66.1
AT5G27860 Arabidopsis thaliana HOM05D007682 ORTHO05D009690 2.0e-12 75.9 59 66.1
MBI19_g44105_MAGBIO Magnolia biondii HOM05D007682 ORTHO05D009690 2.0e-12 75.9 54 74.1
ATR0693G225 Amborella trichopoda HOM05D007682 ORTHO05D009690 3.5e-12 75.1 52 73.1
Ah.06g189950 Amaranthus hybridus HOM05D007682 ORTHO05D009690 7.8e-12 73.9 51 74.5
EL10Ac4g09894 Beta vulgaris HOM05D007682 ORTHO05D009690 3.0e-11 72.0 51 72.5
AL6G39080 Arabidopsis lyrata HOM05D007682 ORTHO05D009690 3.9e-11 71.6 59 64.4
Nitab4.5_0003497g0050 Nicotiana tabacum HOM05D007682 ORTHO05D009690 8.6e-11 70.5 52 69.2
unitig_699.g19250 Utricularia gibba HOM05D007682 ORTHO05D009690 5.6e-10 67.8 50 66.0
HPP92_010684 Vanilla planifolia HOM05D007682 ORTHO05D009690 2.8e-09 65.5 46 73.9
MBI19_g47767_MAGBIO Magnolia biondii HOM05D007682 ORTHO05D009690 8.0e-09 63.9 54 68.5
DCAR_022140 Daucus carota HOM05D007682 ORTHO05D009690 8.9e-08 60.5 55 54.5


User provided reference genes

Program Settings