Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031345 Camellia sinensis var. sinensis HOM05D006992 ORTHO05D008752 5.3e-119 431.0 217 100.0
Actinidia33837 Actinidia chinensis HOM05D006992 ORTHO05D008752 7.7e-94 347.4 218 83.9
Nn3g21348 Nelumbo nucifera HOM05D006992 ORTHO05D008752 6.4e-88 327.8 198 84.3
Lsat_1_v5_gn_2_67081 Lactuca sativa HOM05D006992 ORTHO05D008752 4.6e-86 321.6 220 76.4
Atru.chr2.657 Acer truncatum HOM05D006992 ORTHO05D008752 1.3e-85 320.1 201 81.1
vmacro19674 Vaccinium macrocarpon HOM05D006992 ORTHO05D008752 3.0e-85 318.9 218 78.9
Rhsim05G0148900 Rhododendron simsii HOM05D006992 ORTHO05D008752 1.1e-84 317.0 220 77.7
CiPaw.07G008900 Carya illinoinensis HOM05D006992 ORTHO05D008752 2.5e-84 315.8 207 77.8
Sed0003148 Sechium edule HOM05D006992 ORTHO05D008752 7.3e-84 314.3 214 76.6
MD12G1234200 Malus domestica HOM05D006992 ORTHO05D008752 9.5e-84 313.9 194 82.0
CiPaw.08G178000 Carya illinoinensis HOM05D006992 ORTHO05D008752 1.2e-83 313.5 196 81.6
Oeu012474.1 Olea europaea HOM05D006992 ORTHO05D008752 2.1e-83 312.8 208 77.4
ClCG03G016340 Citrullus lanatus HOM05D006992 ORTHO05D008752 3.6e-83 312.0 208 77.9
MELO3C015384.2 Cucumis melo HOM05D006992 ORTHO05D008752 3.6e-83 312.0 212 77.4
Prupe.6G337300 Prunus persica HOM05D006992 ORTHO05D008752 4.7e-83 311.6 205 78.0
Cfa006481 Carpinus fangiana HOM05D006992 ORTHO05D008752 6.2e-83 311.2 200 81.5
HanXRQChr14g0445751 Helianthus annuus HOM05D006992 ORTHO05D008752 6.2e-83 311.2 211 76.3
Sc09g0003710 Simmondsia chinensis HOM05D006992 ORTHO05D008752 8.0e-83 310.8 223 73.1
TAR633G1762 Trochodendron aralioides HOM05D006992 ORTHO05D008752 1.0e-82 310.5 221 73.8
FvH4_6g03930 Fragaria vesca HOM05D006992 ORTHO05D008752 1.8e-82 309.7 203 77.8
QL03p000176 Quercus lobata HOM05D006992 ORTHO05D008752 1.8e-82 309.7 210 77.1
RcHm_v2.0_Chr3g0452481 Rosa chinensis HOM05D006992 ORTHO05D008752 1.8e-82 309.7 203 78.3
Ciclev10002483m.g Citrus clementina HOM05D006992 ORTHO05D008752 6.8e-82 307.8 214 77.1
CAN.G424.13 Capsicum annuum HOM05D006992 ORTHO05D008752 1.2e-81 307.0 211 75.8
Thecc.05G291400 Theobroma cacao HOM05D006992 ORTHO05D008752 1.2e-81 307.0 200 80.5
CsaV3_1G039620 Cucumis sativus L. HOM05D006992 ORTHO05D008752 3.4e-81 305.4 208 76.0
PGR083G1999 Punica granatum HOM05D006992 ORTHO05D008752 1.1e-79 300.4 215 73.0
FAN05G0877 Fragaria x ananassa HOM05D000167 ORTHO05D000640 1.4e-79 300.1 198 77.8
THA.LOC104818652 Tarenaya hassleriana HOM05D006992 ORTHO05D008752 1.9e-79 299.7 205 73.7
FAN09G1577 Fragaria x ananassa HOM05D000167 ORTHO05D000640 2.4e-79 299.3 198 78.3
Solyc02g079130.3 Solanum lycopersicum HOM05D006992 ORTHO05D008752 5.4e-79 298.1 213 71.4
AL3G15290 Arabidopsis lyrata HOM05D006992 ORTHO05D008752 7.0e-79 297.7 195 76.9
Cc02_g31290 Coffea canephora HOM05D006992 ORTHO05D008752 7.0e-79 297.7 176 85.2
Sopen02g023930 Solanum pennellii HOM05D006992 ORTHO05D008752 7.0e-79 297.7 213 71.4
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 9.2e-79 297.4 192 79.2
FAN14G0596 Fragaria x ananassa HOM05D006992 ORTHO05D008752 9.2e-79 297.4 197 78.2
TWI36G0139 Tripterygium wilfordii HOM05D006992 ORTHO05D008752 9.2e-79 297.4 210 74.8
Eucgr.B01740 Eucalyptus grandis HOM05D006992 ORTHO05D008752 1.6e-78 296.6 191 78.5
FAN05G5181 Fragaria x ananassa HOM05D006992 ORTHO05D008752 1.6e-78 296.6 197 77.2
Nitab4.5_0004284g0080 Nicotiana tabacum HOM05D006992 ORTHO05D008752 1.6e-78 296.6 194 78.4
QL03p000513 Quercus lobata HOM05D006992 ORTHO05D008752 1.6e-78 296.6 233 69.5
EL10Ac4g09207 Beta vulgaris HOM05D006992 ORTHO05D008752 4.6e-78 295.0 202 75.7
Nitab4.5_0001410g0140 Nicotiana tabacum HOM05D006992 ORTHO05D008752 6.0e-78 294.7 195 77.9
Thhalv10021439m.g Eutrema salsugineum HOM05D006992 ORTHO05D008752 7.8e-78 294.3 195 76.9
Gohir.A13G106100 Gossypium hirsutum HOM05D006992 ORTHO05D008752 7.8e-78 294.3 206 74.8
Manes.09G157800 Manihot esculenta HOM05D006992 ORTHO05D008752 7.8e-78 294.3 207 72.5
Carub.0003s0417 Capsella rubella HOM05D006992 ORTHO05D008752 1.0e-77 293.9 195 75.9
Gorai.013G122400 Gossypium raimondii HOM05D006992 ORTHO05D008752 1.0e-77 293.9 203 75.4
CARHR079260 Cardamine hirsuta HOM05D006992 ORTHO05D008752 1.3e-77 293.5 195 75.9
ECA238G1326 Erigeron canadensis HOM05D006992 ORTHO05D008752 1.7e-77 293.1 175 85.7
PGSC0003DMG400022358 Solanum tuberosum HOM05D006992 ORTHO05D008752 2.3e-77 292.7 213 70.0
AT3G04950 Arabidopsis thaliana HOM05D006992 ORTHO05D008752 3.0e-77 292.4 216 71.3
Gohir.D13G108900 Gossypium hirsutum HOM05D006992 ORTHO05D008752 3.0e-77 292.4 203 74.9
PSO210G3204 Papaver somniferum HOM05D006992 ORTHO05D008752 3.0e-77 292.4 193 76.2
CDE02G3150 Ceratophyllum demersum HOM05D006992 ORTHO05D008752 6.6e-77 291.2 207 72.0
PSO832G0773 Papaver somniferum HOM05D006992 ORTHO05D008752 6.6e-77 291.2 193 75.6
Potri.013G034100 Populus trichocarpa HOM05D006992 ORTHO05D008752 1.5e-76 290.0 204 73.5
Hund06999 Selenicereus undatus HOM05D006992 ORTHO05D008752 1.9e-76 289.7 189 79.4
Phvul.006G097900 Phaseolus vulgaris HOM05D006992 ORTHO05D008752 3.3e-76 288.9 206 71.8
GSVIVG01021889001 Vitis vinifera HOM05D006992 ORTHO05D008752 7.3e-76 287.7 176 80.7
CANSAT54G1892 Cannabis sativa HOM05D006992 ORTHO05D008752 9.5e-76 287.3 210 72.4
BcaC01g04339 Brassica carinata HOM05D006992 ORTHO05D008752 1.2e-75 287.0 195 74.4
Sp3g03770 Schrenkiella parvula HOM05D006992 ORTHO05D008752 1.6e-75 286.6 193 74.6
AUR62000954 Chenopodium quinoa HOM05D006992 ORTHO05D008752 2.1e-75 286.2 198 74.2
BcaB04g19286 Brassica carinata HOM05D006992 ORTHO05D008752 2.8e-75 285.8 195 73.8
FAN02G1922 Fragaria x ananassa HOM05D000167 ORTHO05D000640 6.2e-75 284.6 198 75.8
Glyma.19G241400 Glycine max HOM05D006992 ORTHO05D008752 8.1e-75 284.3 213 69.5
Gorai.007G286500 Gossypium raimondii HOM05D006992 ORTHO05D008752 1.1e-74 283.9 202 71.8
Migut.N01946 Erythranthe guttata HOM05D006992 ORTHO05D008752 3.1e-74 282.3 200 71.0
Peaxi162Scf00103g00035 Petunia axillaris HOM05D006992 ORTHO05D008752 1.5e-73 280.0 177 78.5
DCAR_022834 Daucus carota HOM05D006992 ORTHO05D008752 2.0e-73 279.6 213 71.8
Medtr7g114390 Medicago truncatula HOM05D006992 ORTHO05D008752 2.0e-73 279.6 192 70.8
Ca_09397_v3 Cicer arietinum L. HOM05D006992 ORTHO05D008752 3.4e-73 278.9 198 71.2
Lj1g0025869 Lotus japonicus HOM05D006992 ORTHO05D008752 5.8e-73 278.1 215 69.3
BraA03t12570Z Brassica rapa HOM05D006992 ORTHO05D008752 9.8e-73 277.3 189 75.1
Sabra13G0033300 Salix brachista HOM05D006992 ORTHO05D008752 9.8e-73 277.3 198 72.7
ATR0706G207 Amborella trichopoda HOM05D006992 ORTHO05D008752 1.3e-72 276.9 204 70.1
A03p33950 Brassica napus HOM05D003164 ORTHO05D003575 1.3e-72 276.9 188 75.0
Psat0s2796g0040 Pisum sativum HOM05D006992 ORTHO05D008752 1.3e-72 276.9 220 66.8
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 1.7e-72 276.6 146 93.2
Lalb_Chr18g0045231 Lupinus albus HOM05D006992 ORTHO05D008752 1.7e-72 276.6 209 67.0
BolC3t16415H Brassica oleracea HOM05D006992 ORTHO05D008752 2.9e-72 275.8 189 74.6
Gohir.A11G256900 Gossypium hirsutum HOM05D006992 ORTHO05D008752 2.9e-72 275.8 202 69.8
TPR.G6916 Trifolium pratense HOM05D006992 ORTHO05D008752 1.4e-71 273.5 195 71.3
C03p41330 Brassica napus HOM05D003164 ORTHO05D003575 2.4e-71 272.7 188 73.9
Aqoxy5G00680 Aquilegia oxysepala HOM05D006992 ORTHO05D008752 7.1e-71 271.2 195 71.8
Lj7A478T92 Lonicera japonica HOM05D006992 ORTHO05D008752 9.2e-71 270.8 287 57.1
Haze_04310 Corylus avellana HOM05D006992 ORTHO05D008752 1.0e-69 267.3 295 55.6
arahy.Tifrunner.gnm1.ann1.ZZK2AU Arachis hypogaea HOM05D006992 ORTHO05D008752 2.3e-69 266.2 203 68.0
arahy.Tifrunner.gnm1.ann1.26USVU Arachis hypogaea HOM05D006992 ORTHO05D008752 2.8e-67 259.2 198 68.7
SGA_v2.0_scaffold80G25908 Striga asiatica HOM05D006992 ORTHO05D008752 2.8e-67 259.2 206 65.5
SalBow3G4063 Salvia bowleyana HOM05D006992 ORTHO05D008752 4.7e-67 258.5 207 64.3
Os06g0298500 Oryza sativa ssp. japonica HOM05D006992 ORTHO05D008752 6.2e-67 258.1 191 66.0
AUR62005014 Chenopodium quinoa HOM05D006992 ORTHO05D008752 1.4e-66 256.9 186 72.0
Migut.N01944 Erythranthe guttata HOM05D006992 ORTHO05D008752 9.9e-65 250.8 197 66.0
Zm00001eb381040 Zea mays HOM05D006992 ORTHO05D008752 1.3e-61 240.4 208 60.1
unitig_746.g26840 Utricularia gibba HOM05D006992 ORTHO05D008752 2.5e-60 236.1 140 80.0
HPP92_017993 Vanilla planifolia HOM05D006992 ORTHO05D008752 3.2e-55 219.2 187 58.3
HPP92_026697 Vanilla planifolia HOM05D006992 ORTHO05D008752 1.6e-54 216.9 187 57.8
Gohir.D11G266700 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.5e-52 210.3 159 69.2
SEGI_08689 Sequoiadendron giganteum HOM05D006992 ORTHO05D008752 3.3e-52 209.1 225 50.7
VMungo0540G1333 Vigna mungo HOM05D006992 ORTHO05D008752 6.2e-51 204.9 151 68.9
Ca_30169_v3 Cicer arietinum L. HOM05D006992 ORTHO05D008752 9.0e-50 201.1 153 68.6
Glyma.03G244000 Glycine max HOM05D006992 ORTHO05D008752 4.9e-48 195.3 177 61.6
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 1.6e-43 180.3 102 86.3
PSO210G4341 Papaver somniferum HOM05D006992 ORTHO05D008752 3.4e-41 172.6 166 56.6
PSO339G2351 Papaver somniferum HOM05D006992 ORTHO05D008752 7.6e-41 171.4 166 55.4
PSO384G0024 Papaver somniferum HOM05D006992 ORTHO05D008752 2.4e-39 166.4 166 54.2
Gohir.D03G094700 Gossypium hirsutum HOM05D006992 ORTHO05D008752 7.9e-38 161.4 98 76.5
SEGI_13740 Sequoiadendron giganteum HOM05D006992 ORTHO05D008752 4.0e-34 149.1 179 48.0
Aa31LG5G15340 Aethionema arabicum HOM05D006992 ORTHO05D008752 1.1e-31 141.0 80 82.5
FAN05G0951 Fragaria x ananassa HOM05D000167 ORTHO05D000640 1.9e-31 140.2 134 59.7
Gohir.D07G141600 Gossypium hirsutum HOM05D006992 ORTHO05D008752 3.9e-29 132.5 78 79.5
Gorai.001G169400 Gossypium raimondii HOM05D006992 ORTHO05D008752 6.7e-29 131.7 78 79.5
Gohir.D12G044200 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.3e-27 127.5 78 76.9
SMO361G0250 Selaginella moellendorffii HOM05D006992 ORTHO05D008752 2.2e-24 116.7 212 38.2
RcHm_v2.0_Chr3g0452521 Rosa chinensis HOM05D006992 ORTHO05D008752 5.0e-24 115.5 94 71.3
RcHm_v2.0_Chr1g0321781 Rosa chinensis HOM05D006992 ORTHO05D008752 6.1e-22 108.6 61 82.0
RcHm_v2.0_Chr6g0246461 Rosa chinensis HOM05D006992 ORTHO05D008752 1.8e-21 107.1 61 80.3
VMungo0331G0785 Vigna mungo HOM05D006992 ORTHO05D008752 6.9e-18 95.1 77 61.0
Gohir.D03G082200 Gossypium hirsutum HOM05D006992 ORTHO05D008752 3.8e-16 89.4 54 79.6
Sp3g03780 Schrenkiella parvula HOM05D000160 ORTHO05D000914 2.8e-11 73.2 39 87.2
Gorai.010G111000 Gossypium raimondii HOM05D001408 ORTHO05D001312 5.3e-10 68.9 40 77.5
Gohir.D06G096300 Gossypium hirsutum HOM05D001408 ORTHO05D001312 4.5e-09 65.9 40 72.5
Gorai.008G101100 Gossypium raimondii HOM05D006061 ORTHO05D007450 4.5e-09 65.9 39 76.9
RcHm_v2.0_Chr3g0452531 Rosa chinensis HOM05D006992 ORTHO05D008752 5.9e-09 65.5 35 91.4
SGA_v2.0_scaffold243G44307 Striga asiatica HOM05D060893 ORTHO05D008752 6.1e-06 55.5 108 41.7


User provided reference genes

Program Settings