Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031330 Camellia sinensis var. sinensis HOM05D006393 ORTHO05D008088 2.6e-153 545.4 288 100.0
Actinidia09396 Actinidia chinensis HOM05D006393 ORTHO05D008088 7.8e-134 480.7 288 85.1
Rhsim01G0090600 Rhododendron simsii HOM05D006393 ORTHO05D008088 2.8e-131 472.2 288 83.0
vmacro20677 Vaccinium macrocarpon HOM05D006393 ORTHO05D008088 4.4e-129 464.9 288 82.3
Cfa003299 Carpinus fangiana HOM05D006393 ORTHO05D008088 3.2e-127 458.8 288 80.2
Hma1.2p1_0018F.1_g013070 Hydrangea macrophylla HOM05D006393 ORTHO05D008088 3.2e-127 458.8 288 81.9
Haze_25669 Corylus avellana HOM05D006393 ORTHO05D008088 5.4e-127 458.0 288 80.6
CiPaw.03G236400 Carya illinoinensis HOM05D006393 ORTHO05D008088 3.5e-126 455.3 288 78.5
Prupe.7G235100 Prunus persica HOM05D006393 ORTHO05D008088 3.9e-125 451.8 288 78.8
TWI34G1546 Tripterygium wilfordii HOM05D006393 ORTHO05D008088 8.6e-125 450.7 288 78.1
Thecc.09G116800 Theobroma cacao HOM05D006393 ORTHO05D008088 4.3e-124 448.4 288 78.5
GSVIVG01015453001 Vitis vinifera HOM05D006393 ORTHO05D008088 5.6e-124 448.0 288 78.5
QL02p086364 Quercus lobata HOM05D006393 ORTHO05D008088 7.3e-124 447.6 287 77.7
Sed0023374 Sechium edule HOM05D006393 ORTHO05D008088 1.2e-123 446.8 288 75.3
Ciclev10008889m.g Citrus clementina HOM05D006393 ORTHO05D008088 1.6e-123 446.4 288 79.5
CAN.G1665.6 Capsicum annuum HOM05D006393 ORTHO05D008088 2.1e-123 446.0 288 78.5
Nitab4.5_0002551g0020 Nicotiana tabacum HOM05D006393 ORTHO05D008088 2.8e-123 445.7 288 78.8
CsaV3_1G030940 Cucumis sativus L. HOM05D006393 ORTHO05D008088 4.7e-123 444.9 288 75.7
MD02G1061500 Malus domestica HOM05D006393 ORTHO05D008088 8.1e-123 444.1 288 78.1
MELO3C025307.2 Cucumis melo HOM05D006393 ORTHO05D008088 1.8e-122 443.0 288 75.7
Solyc10g079970.2 Solanum lycopersicum HOM05D006393 ORTHO05D008088 1.8e-122 443.0 288 78.1
Sopen10g030590 Solanum pennellii HOM05D006393 ORTHO05D008088 2.3e-122 442.6 288 77.8
Atru.chr7.1280 Acer truncatum HOM05D006393 ORTHO05D008088 4.0e-122 441.8 288 76.7
COL.COLO4_34948 Corchorus olitorius HOM05D006393 ORTHO05D008088 5.2e-122 441.4 288 76.7
Cpa.g.sc23.161 Carica papaya HOM05D006393 ORTHO05D008088 8.9e-122 440.7 288 76.4
Manes.16G064200 Manihot esculenta HOM05D006393 ORTHO05D008088 8.9e-122 440.7 288 75.3
Duzib168G1441 Durio zibethinus HOM05D006393 ORTHO05D008088 1.5e-121 439.9 288 77.1
ClCG06G010490 Citrullus lanatus HOM05D006393 ORTHO05D008088 3.4e-121 438.7 289 74.7
PGSC0003DMG401029823 Solanum tuberosum HOM05D006393 ORTHO05D008088 1.7e-120 436.4 288 76.7
FvH4_1g04221 Fragaria vesca HOM05D006393 ORTHO05D008088 2.9e-120 435.6 288 74.7
Potri.018G073000 Populus trichocarpa HOM05D006393 ORTHO05D008088 4.9e-120 434.9 288 75.3
Migut.C00826 Erythranthe guttata HOM05D006393 ORTHO05D008088 2.4e-119 432.6 288 76.0
Hund09172 Selenicereus undatus HOM05D006393 ORTHO05D008088 3.2e-119 432.2 288 73.3
DCAR_010438 Daucus carota HOM05D006393 ORTHO05D008088 4.1e-119 431.8 288 76.4
RcHm_v2.0_Chr2g0089771 Rosa chinensis HOM05D006393 ORTHO05D008088 1.2e-118 430.3 288 74.3
PGR102G0276 Punica granatum HOM05D006393 ORTHO05D008088 1.6e-118 429.9 288 75.3
MSTRG.1197 Avicennia marina HOM05D006393 ORTHO05D008088 2.1e-118 429.5 288 75.0
Aqoxy7G01879 Aquilegia oxysepala HOM05D006393 ORTHO05D008088 1.7e-117 426.4 287 74.2
Lj7A639G46 Lonicera japonica HOM05D006393 ORTHO05D008088 5.1e-117 424.9 322 68.3
Lalb_Chr13g0302251 Lupinus albus HOM05D006393 ORTHO05D008088 1.1e-116 423.7 283 75.3
Nn8g39292 Nelumbo nucifera HOM05D006393 ORTHO05D008088 2.5e-116 422.5 288 74.3
Sabra18G0063700 Salix brachista HOM05D006393 ORTHO05D008088 2.5e-116 422.5 288 74.7
Gohir.D06G058100 Gossypium hirsutum HOM05D006393 ORTHO05D008088 5.6e-116 421.4 288 74.0
HanXRQChr03g0062141 Helianthus annuus HOM05D006393 ORTHO05D008088 5.6e-116 421.4 288 74.3
Gorai.010G068300 Gossypium raimondii HOM05D006393 ORTHO05D008088 7.3e-116 421.0 288 74.0
arahy.Tifrunner.gnm1.ann1.RZM4QH Arachis hypogaea HOM05D006393 ORTHO05D008088 1.2e-115 420.2 282 74.1
SGA_v2.0_scaffold92G28235 Striga asiatica HOM05D006393 ORTHO05D008088 1.6e-115 419.9 288 74.7
arahy.Tifrunner.gnm1.ann1.3AE437 Arachis hypogaea HOM05D006393 ORTHO05D008088 3.6e-115 418.7 279 74.2
AUR62033415 Chenopodium quinoa HOM05D006393 ORTHO05D008088 1.1e-114 417.2 288 70.1
PSO782G0281 Papaver somniferum HOM05D006393 ORTHO05D008088 1.1e-114 417.2 282 74.5
unitig_37.g13035 Utricularia gibba HOM05D006393 ORTHO05D008088 1.1e-114 417.2 288 74.3
Gohir.A06G059900 Gossypium hirsutum HOM05D006393 ORTHO05D008088 1.4e-114 416.8 288 73.3
Aa31LG9G6050 Aethionema arabicum HOM05D006393 ORTHO05D008088 5.2e-114 414.8 279 73.1
BraA10t44056Z Brassica rapa HOM05D006393 ORTHO05D008088 2.6e-113 412.5 278 73.7
Sp6g24450 Schrenkiella parvula HOM05D006393 ORTHO05D008088 4.4e-113 411.8 279 72.8
BcaC04g19399 Brassica carinata HOM05D006393 ORTHO05D008088 7.6e-113 411.0 278 73.4
A10p19800 Brassica napus HOM05D006393 ORTHO05D008088 7.6e-113 411.0 278 73.4
C09p56120 Brassica napus HOM05D006393 ORTHO05D008088 7.6e-113 411.0 278 73.4
BolC9t58479H Brassica oleracea HOM05D006393 ORTHO05D008088 7.6e-113 411.0 278 73.4
Carub.0006s1830 Capsella rubella HOM05D006393 ORTHO05D008088 1.3e-112 410.2 279 72.0
BcaB08g36553 Brassica carinata HOM05D006393 ORTHO05D008088 1.7e-112 409.8 278 73.0
AT5G19930 Arabidopsis thaliana HOM05D006393 ORTHO05D008088 3.8e-112 408.7 278 72.3
AL6G31460 Arabidopsis lyrata HOM05D006393 ORTHO05D008088 1.1e-111 407.1 279 71.7
Thhalv10014278m.g Eutrema salsugineum HOM05D006393 ORTHO05D008088 1.4e-111 406.8 278 73.0
EL10Ac8g18557 Beta vulgaris HOM05D006393 ORTHO05D008088 1.2e-110 403.7 288 69.4
Ca_21724_v3 Cicer arietinum L. HOM05D006393 ORTHO05D008088 1.3e-109 400.2 282 70.2
MBI01_g13571_MAGBIO Magnolia biondii HOM05D006393 ORTHO05D008088 3.9e-109 398.7 288 70.8
MBI04_g35350_MAGBIO Magnolia biondii HOM05D006393 ORTHO05D008088 6.6e-109 397.9 249 78.3
FAN23G0113 Fragaria x ananassa HOM05D006393 ORTHO05D008088 1.1e-108 397.1 288 70.5
Lsat_1_v5_gn_7_42880 Lactuca sativa HOM05D006393 ORTHO05D008088 2.5e-108 396.0 288 70.1
Psat4g042480 Pisum sativum HOM05D006393 ORTHO05D008088 4.3e-108 395.2 283 70.3
Nitab4.5_0010615g0010 Nicotiana tabacum HOM05D006393 ORTHO05D008088 1.3e-107 393.7 249 79.1
Oeu046267.2 Olea europaea HOM05D006393 ORTHO05D008088 3.6e-107 392.1 426 53.3
THA.LOC104815111 Tarenaya hassleriana HOM05D006393 ORTHO05D008088 8.1e-107 391.0 279 72.0
AUR62011040 Chenopodium quinoa HOM05D006393 ORTHO05D008088 1.1e-106 390.6 264 71.6
Eucgr.C04142 Eucalyptus grandis HOM05D006393 ORTHO05D008088 1.1e-106 390.6 251 75.7
Medtr4g112990 Medicago truncatula HOM05D006393 ORTHO05D008088 1.8e-106 389.8 283 67.1
TPR.G26762 Trifolium pratense HOM05D006393 ORTHO05D008088 1.8e-106 389.8 283 67.8
VMungo1215G0586 Vigna mungo HOM05D006393 ORTHO05D008088 3.1e-106 389.0 282 68.4
Lj4g0026371 Lotus japonicus HOM05D006393 ORTHO05D008088 6.9e-106 387.9 282 70.6
Phvul.003G159300 Phaseolus vulgaris HOM05D006393 ORTHO05D008088 1.5e-105 386.7 282 68.1
CDE06G0973 Ceratophyllum demersum HOM05D006393 ORTHO05D008088 3.4e-105 385.6 288 68.1
Glyma.17G120200 Glycine max HOM05D006393 ORTHO05D008088 1.3e-104 383.6 285 68.8
Ah.14g081310 Amaranthus hybridus HOM05D006393 ORTHO05D008088 4.2e-103 378.6 348 58.9
Peaxi162Scf00223g01425 Petunia axillaris HOM05D006393 ORTHO05D008088 5.4e-103 378.3 301 67.4
Cc06_g09230 Coffea canephora HOM05D006393 ORTHO05D008088 2.1e-102 376.3 236 80.9
Os01g0507300 Oryza sativa ssp. japonica HOM05D006393 ORTHO05D008088 6.0e-102 374.8 280 67.5
HPP92_009792 Vanilla planifolia HOM05D006393 ORTHO05D008088 3.9e-101 372.1 288 63.9
Zm00001eb122440 Zea mays HOM05D006393 ORTHO05D008088 3.1e-98 362.5 273 67.4
Zm00001eb106640 Zea mays HOM05D006393 ORTHO05D008088 9.0e-98 360.9 280 63.9
HPP92_008697 Vanilla planifolia HOM05D006393 ORTHO05D008088 1.3e-96 357.1 288 61.5
Sc07g0007380 Simmondsia chinensis HOM05D006393 ORTHO05D008088 2.9e-96 355.9 236 74.2
ATR0083G026 Amborella trichopoda HOM05D006393 ORTHO05D008088 1.4e-95 353.6 279 66.3
SEGI_37175 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 4.2e-95 352.1 288 62.5
Os01g0178200 Oryza sativa ssp. japonica HOM05D006393 ORTHO05D008088 6.0e-94 348.2 322 56.5
Dinv41564 Davidia involucrata HOM05D006752 ORTHO05D008088 1.5e-92 343.6 226 77.9
ECA240G0151 Erigeron canadensis HOM05D006393 ORTHO05D008088 9.6e-92 340.9 222 76.6
SalBow7G4467 Salvia bowleyana HOM05D006393 ORTHO05D008088 1.1e-90 337.4 288 62.8
Mapoly0052s0018 Marchantia polymorpha HOM05D006393 ORTHO05D008088 4.3e-84 315.5 284 54.9
CARHR192920 Cardamine hirsuta HOM05D006393 ORTHO05D008088 2.1e-83 313.2 200 75.5
Pp3c12_24880 Physcomitrium patens HOM05D006393 ORTHO05D008088 2.9e-80 302.8 282 55.7
Peaxi162Scf00223g01424 Petunia axillaris HOM05D006393 ORTHO05D008088 1.2e-78 297.4 243 66.7
SMO340G0297 Selaginella moellendorffii HOM05D006393 ORTHO05D008088 7.9e-78 294.7 284 53.5
Oeu027539.2 Olea europaea HOM05D006393 ORTHO05D008088 4.1e-74 282.3 292 55.5
TAR636G2166 Trochodendron aralioides HOM05D006393 ORTHO05D008088 1.3e-59 234.2 146 78.1
PRCOL_00002470 Prasinoderma coloniale HOM05D006393 ORTHO05D008088 3.7e-51 206.1 283 44.5
Cre17.g726350 Chlamydomonas reinhardtii HOM05D006393 ORTHO05D008088 4.1e-50 202.6 319 40.4
CDE07G1479 Ceratophyllum demersum HOM05D006393 ORTHO05D008088 9.1e-50 201.4 164 61.0
SEGI_23420 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 1.6e-46 190.7 181 53.6
Psat6g218400 Pisum sativum HOM05D006393 ORTHO05D008088 1.5e-39 167.5 116 75.0
SEGI_36873 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 2.3e-37 160.2 181 51.4
Glyma.05G012000 Glycine max HOM05D006393 ORTHO05D008088 2.0e-36 157.1 114 72.8
Cre02.g118200 Chlamydomonas reinhardtii HOM05D006393 ORTHO05D008088 3.4e-36 156.4 335 33.4
Eucgr.L03082 Eucalyptus grandis HOM05D006393 ORTHO05D008088 7.5e-36 155.2 132 59.8
MCO12G460 Micromonas commoda HOM05D006393 ORTHO05D008088 7.0e-34 148.7 160 51.2
Psat5g214680 Pisum sativum HOM05D006393 ORTHO05D008088 1.8e-29 134.0 95 69.5
SEGI_10855 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 8.9e-29 131.7 189 43.4
Zm00001eb342450 Zea mays HOM05D006393 ORTHO05D008088 1.1e-26 124.8 167 44.3
Eucgr.E03680 Eucalyptus grandis HOM05D006393 ORTHO05D008088 6.6e-24 115.5 97 61.9
vmacro16552 Vaccinium macrocarpon HOM05D006393 ORTHO05D008088 1.5e-12 77.8 144 42.4
SEGI_14370 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 3.5e-09 66.6 57 57.9
SEGI_30446 Sequoiadendron giganteum HOM05D006393 ORTHO05D000979 6.0e-09 65.9 67 52.2
TAR636G3545 Trochodendron aralioides HOM05D006393 ORTHO05D008088 6.0e-09 65.9 49 67.3
Actinidia20331 Actinidia chinensis HOM05D006393 ORTHO05D008088 9.5e-07 58.5 34 79.4
Zm00001eb117320 Zea mays HOM05D006393 ORTHO05D444415 6.2e-06 55.8 55 61.8


User provided reference genes

Program Settings