Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031315 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 0.0e+00 1267.3 663 100.0
CSS0037332 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 0.0e+00 1194.9 731 88.5
CSS0031564 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 6.7e-181 638.3 694 57.2
Rhsim03G0105700 Rhododendron simsii HOM05D005926 ORTHO05D007001 1.2e-169 600.9 686 55.8
Actinidia18581 Actinidia chinensis HOM05D005926 ORTHO05D007001 1.2e-166 590.9 704 52.7
CSS0015422 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 2.3e-165 586.6 748 51.7
vmacro07227 Vaccinium macrocarpon HOM05D005926 ORTHO05D007001 7.5e-164 581.6 684 55.4
Dinv30648 Davidia involucrata HOM05D005926 ORTHO05D007001 2.8e-155 553.1 765 49.7
Actinidia28534 Actinidia chinensis HOM05D005926 ORTHO05D007001 3.3e-143 513.1 746 46.1
QL04p042256 Quercus lobata HOM05D005926 ORTHO05D007001 4.7e-118 429.5 695 44.3
GSVIVG01034734001 Vitis vinifera HOM05D005926 ORTHO05D007001 8.1e-118 428.7 752 41.5
Ciclev10030805m.g Citrus clementina HOM05D005926 ORTHO05D007001 2.0e-116 424.1 675 45.8
TAR623G1319 Trochodendron aralioides HOM05D005926 ORTHO05D007001 1.0e-112 411.8 712 42.4
Manes.07G090100 Manihot esculenta HOM05D005926 ORTHO05D007001 1.5e-111 407.9 694 42.4
Atru.chr12.975 Acer truncatum HOM05D005926 ORTHO05D007001 4.3e-111 406.4 700 42.9
Lj2C28T9 Lonicera japonica HOM05D005926 ORTHO05D007001 9.3e-106 388.7 613 45.5
CANSAT56G4130 Cannabis sativa HOM05D005926 ORTHO05D007001 6.0e-105 386.0 695 41.3
RcHm_v2.0_Chr1g0333121 Rosa chinensis HOM05D005926 ORTHO05D007001 3.6e-102 376.7 572 46.2
FvH4_7g05860 Fragaria vesca HOM05D005926 ORTHO05D007001 3.1e-101 373.6 573 45.5
FAN10G2760 Fragaria x ananassa HOM05D005926 ORTHO05D007001 2.0e-100 370.9 592 44.6
MD02G1248000 Malus domestica HOM05D005926 ORTHO05D007001 4.5e-100 369.8 770 40.4
Duzib106G0448 Durio zibethinus HOM05D005926 ORTHO05D007001 7.6e-100 369.0 720 40.7
TWI63G0673 Tripterygium wilfordii HOM05D005926 ORTHO05D007001 2.9e-99 367.1 694 42.1
FAN03G1852 Fragaria x ananassa HOM05D005926 ORTHO05D007001 1.1e-98 365.2 570 45.6
CiPaw.14G029200 Carya illinoinensis HOM05D005926 ORTHO05D007001 1.2e-97 361.7 732 39.8
Potri.008G025000 Populus trichocarpa HOM05D005926 ORTHO05D007001 1.1e-95 355.1 710 39.7
Hma1.2p1_0010F.1_g007030 Hydrangea macrophylla HOM05D005926 ORTHO05D007001 1.9e-95 354.4 491 50.7
Thecc.10G111000 Theobroma cacao HOM05D005926 ORTHO05D007001 2.5e-95 354.0 704 39.2
TAR369G1114 Trochodendron aralioides HOM05D005926 ORTHO05D007001 1.6e-94 351.3 797 38.1
COL.COLO4_06813 Corchorus olitorius HOM05D005926 ORTHO05D007001 2.8e-94 350.5 717 40.3
Gohir.D04G017400 Gossypium hirsutum HOM05D005926 ORTHO05D007001 3.7e-94 350.1 766 37.6
Prupe.2G085400 Prunus persica HOM05D005926 ORTHO05D007001 4.8e-94 349.7 740 40.0
Duzib128G1763 Durio zibethinus HOM05D005926 ORTHO05D007001 4.0e-93 346.7 717 40.3
Gorai.012G020100 Gossypium raimondii HOM05D005926 ORTHO05D007001 2.0e-92 344.4 770 37.4
MD07G1068100 Malus domestica HOM05D005926 ORTHO05D007001 2.6e-92 344.0 578 45.3
TAR636G3019 Trochodendron aralioides HOM05D005926 ORTHO05D007001 4.9e-91 339.7 647 42.2
Gohir.A05G398500 Gossypium hirsutum HOM05D005926 ORTHO05D007001 1.4e-90 338.2 776 37.0
Sabra08G0016800 Salix brachista HOM05D005926 ORTHO05D007001 8.7e-88 328.9 704 39.5
Nn2g14047 Nelumbo nucifera HOM05D005926 ORTHO05D007001 3.7e-86 323.6 674 39.2
Cc02_g10060 Coffea canephora HOM05D005926 ORTHO05D007001 3.1e-85 320.5 702 38.2
Eucgr.G02709 Eucalyptus grandis HOM05D005926 ORTHO05D007001 4.0e-85 320.1 708 38.3
CsaV3_6G004110 Cucumis sativus L. HOM05D005926 ORTHO05D007001 1.2e-84 318.5 704 37.8
ClCG08G008140 Citrullus lanatus HOM05D005926 ORTHO05D007001 2.0e-84 317.8 702 37.9
Sabra10G0182600 Salix brachista HOM05D005926 ORTHO05D007001 7.6e-84 315.8 784 37.1
Peaxi162Scf00004g00119 Petunia axillaris HOM05D005926 ORTHO05D007001 1.1e-82 312.0 699 38.6
SalBow6G1645 Salvia bowleyana HOM05D005926 ORTHO05D007001 3.2e-82 310.5 687 38.0
Cpa.g.sc19.23 Carica papaya HOM05D005926 ORTHO05D007001 4.2e-82 310.1 839 33.5
MELO3C019887.2 Cucumis melo HOM05D005926 ORTHO05D007001 9.3e-82 308.9 718 37.0
Nn6g35019 Nelumbo nucifera HOM05D005926 ORTHO05D007001 1.6e-81 308.1 685 38.2
Nitab4.5_0002878g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 3.5e-81 307.0 684 38.0
DCAR_014349 Daucus carota HOM05D005926 ORTHO05D007001 5.7e-79 299.7 681 38.3
Glyma.10G202600 Glycine max HOM05D005926 ORTHO05D007001 5.7e-79 299.7 693 36.5
Lj5g0002236 Lotus japonicus HOM05D005926 ORTHO05D007001 2.2e-78 297.7 696 36.8
Nitab4.5_0001027g0040 Nicotiana tabacum HOM05D005926 ORTHO05D007001 1.4e-77 295.0 716 36.7
Phvul.007G104500 Phaseolus vulgaris HOM05D005926 ORTHO05D007001 1.5e-76 291.6 684 35.5
Glyma.20G187800 Glycine max HOM05D005926 ORTHO05D007001 5.0e-75 286.6 697 36.6
Aqoxy4G02869 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 9.4e-74 282.3 707 35.6
Ca_10497_v3 Cicer arietinum L. HOM05D005926 ORTHO05D007001 9.4e-74 282.3 689 36.4
Nitab4.5_0012334g0010 Nicotiana tabacum HOM05D005926 ORTHO05D007001 1.2e-73 282.0 672 37.2
PGSC0003DMG400023487 Solanum tuberosum HOM05D005926 ORTHO05D007001 2.7e-73 280.8 696 36.8
Nitab4.5_0003396g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 3.6e-73 280.4 625 37.8
Sopen05g033810 Solanum pennellii HOM05D005926 ORTHO05D007001 4.6e-73 280.0 707 35.9
Psat6g176680 Pisum sativum HOM05D005926 ORTHO05D007001 5.7e-71 273.1 585 38.5
Sc06g0002210 Simmondsia chinensis HOM05D005926 ORTHO05D007001 7.4e-71 272.7 685 35.6
CAN.G1550.12 Capsicum annuum HOM05D005926 ORTHO05D007001 1.3e-70 271.9 637 37.8
TPR.G2562 Trifolium pratense HOM05D005926 ORTHO05D007001 1.4e-69 268.5 642 36.4
PGR142G4330 Punica granatum HOM05D005926 ORTHO05D007001 2.4e-69 267.7 679 35.6
Migut.F00893 Erythranthe guttata HOM05D005926 ORTHO05D007001 5.3e-69 266.5 703 35.3
Medtr1g492840 Medicago truncatula HOM05D005926 ORTHO05D007001 5.3e-69 266.5 693 34.3
Sed0009709 Sechium edule HOM05D005926 ORTHO05D007001 9.1e-69 265.8 675 36.0
ECA232G4290 Erigeron canadensis HOM05D005926 ORTHO05D007001 5.9e-68 263.1 591 38.2
Lalb_Chr03g0036371 Lupinus albus HOM05D005926 ORTHO05D007001 1.0e-67 262.3 702 35.3
Haze_02593 Corylus avellana HOM05D005926 ORTHO05D007001 6.5e-67 259.6 314 54.8
Solyc05g055360.4 Solanum lycopersicum HOM05D005926 ORTHO05D007001 1.1e-66 258.8 704 34.4
SGA_v2.0_scaffold62G21348 Striga asiatica HOM05D005926 ORTHO05D007001 5.5e-66 256.5 674 35.9
arahy.Tifrunner.gnm1.ann1.J9ASUV Arachis hypogaea HOM05D005926 ORTHO05D007001 6.1e-65 253.1 697 33.7
Dinv20819 Davidia involucrata HOM05D005926 ORTHO05D007001 1.3e-62 245.4 347 49.0
Sed0000046 Sechium edule HOM05D005926 ORTHO05D007001 1.3e-62 245.4 657 34.4
HanXRQChr05g0147041 Helianthus annuus HOM05D005926 ORTHO05D007001 1.1e-61 242.3 608 36.5
PGSC0003DMG400027309 Solanum tuberosum HOM05D005926 ORTHO05D007001 1.4e-61 241.9 674 34.9
VMungo0720G0267 Vigna mungo HOM05D005926 ORTHO05D007001 1.4e-61 241.9 665 33.5
Ah.04g163700 Amaranthus hybridus HOM05D005926 ORTHO05D007001 5.0e-59 233.4 589 35.0
Aqoxy2G01361 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 1.4e-58 231.9 695 32.2
AUR62041545 Chenopodium quinoa HOM05D005926 ORTHO05D007001 5.5e-58 229.9 697 31.4
Lsat_1_v5_gn_6_90261 Lactuca sativa HOM05D005926 ORTHO05D007001 6.7e-56 223.0 609 37.3
PSO384G0761 Papaver somniferum HOM05D005926 ORTHO05D007001 8.2e-54 216.1 550 35.6
PSO339G4155 Papaver somniferum HOM05D005926 ORTHO05D007001 5.3e-53 213.4 546 35.9
Sopen11g003350 Solanum pennellii HOM05D005926 ORTHO05D007001 3.8e-51 207.2 611 34.2
Solyc11g007510.2 Solanum lycopersicum HOM05D005926 ORTHO05D007001 1.5e-50 205.3 614 33.7
EL10Ac4g08669 Beta vulgaris HOM05D005926 ORTHO05D007001 4.2e-50 203.8 680 31.3
THA.LOC104814724 Tarenaya hassleriana HOM05D005926 ORTHO05D007001 2.0e-47 194.9 668 31.0
CARHR161990 Cardamine hirsuta HOM05D005926 ORTHO05D007001 7.5e-47 193.0 683 30.5
arahy.Tifrunner.gnm1.ann1.9BC44J Arachis hypogaea HOM05D005926 ORTHO05D007001 9.7e-47 192.6 644 31.4
Carub.0005s1860 Capsella rubella HOM05D005926 ORTHO05D007001 6.3e-46 189.9 653 30.3
AT3G52240 Arabidopsis thaliana HOM05D005926 ORTHO05D007001 1.8e-45 188.3 702 28.5
Thhalv10010215m.g Eutrema salsugineum HOM05D005926 ORTHO05D007001 4.1e-45 187.2 638 31.0
AL5G32830 Arabidopsis lyrata HOM05D005926 ORTHO05D007001 2.0e-44 184.9 701 27.7
Sp5g10020 Schrenkiella parvula HOM05D005926 ORTHO05D007001 1.5e-42 178.7 639 29.0
BcaB02g08582 Brassica carinata HOM05D005926 ORTHO05D007001 5.5e-42 176.8 587 31.3
A09p45300 Brassica napus HOM05D005926 ORTHO05D007001 3.6e-41 174.1 656 28.4
BraA09t39993Z Brassica rapa HOM05D005926 ORTHO05D007001 3.6e-41 174.1 657 28.6
PSO443G0029 Papaver somniferum HOM05D005926 ORTHO05D007001 3.0e-40 171.0 328 42.7
C08p27480 Brassica napus HOM05D005926 ORTHO05D007001 4.0e-40 170.6 685 27.7
BolC8t50365H Brassica oleracea HOM05D005926 ORTHO05D007001 4.0e-40 170.6 685 27.7
BolC4t25653H Brassica oleracea HOM05D005926 ORTHO05D007001 1.7e-38 165.2 573 30.4
BcaC02g09269 Brassica carinata HOM05D005926 ORTHO05D007001 2.8e-38 164.5 573 30.4
C04p40700 Brassica napus HOM05D005926 ORTHO05D007001 2.8e-38 164.5 574 30.3
BraA04t16409Z Brassica rapa HOM05D005926 ORTHO05D007001 7.0e-37 159.8 584 30.7
Aa31LG10G7340 Aethionema arabicum HOM05D005926 ORTHO05D007001 2.0e-36 158.3 714 28.4
GSVIVG01031385001 Vitis vinifera HOM05D005926 ORTHO05D007001 5.9e-36 156.8 637 31.1
BcaC07g39594 Brassica carinata HOM05D005926 ORTHO05D007001 1.7e-35 155.2 673 27.0
A04p07120 Brassica napus HOM05D005926 ORTHO05D007001 1.1e-34 152.5 586 30.7
Haze_02594 Corylus avellana HOM05D005926 ORTHO05D007001 4.7e-33 147.1 413 36.3
CDE04G2986 Ceratophyllum demersum HOM05D005926 ORTHO05D007001 1.4e-32 145.6 582 30.1
Os05g0445800 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 5.4e-29 133.7 357 32.2
ATR0820G003 Amborella trichopoda HOM05D005926 ORTHO05D007001 1.6e-25 122.1 580 28.8
Zm00001eb289020 Zea mays HOM05D005926 ORTHO05D007001 2.1e-25 121.7 406 29.8
Zm00001eb147390 Zea mays HOM05D005926 ORTHO05D007001 1.8e-24 118.6 310 35.5
Os05g0446500 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 5.2e-24 117.1 355 31.5
unitig_0.g760 Utricularia gibba HOM05D005926 ORTHO05D007001 5.8e-23 113.6 189 43.9
HPP92_002057 Vanilla planifolia HOM05D005926 ORTHO05D007001 1.3e-22 112.5 203 39.9
arahy.Tifrunner.gnm1.ann1.UA3HQT Arachis hypogaea HOM05D005926 ORTHO05D007001 2.4e-21 108.2 301 34.6
Oeu026567.1 Olea europaea HOM05D005926 ORTHO05D007001 4.1e-21 107.5 354 29.9
arahy.Tifrunner.gnm1.ann1.L8M84U Arachis hypogaea HOM05D005926 ORTHO05D007001 3.5e-20 104.4 301 33.9
SEGI_23583 Sequoiadendron giganteum HOM05D005926 ORTHO05D007001 3.0e-19 101.3 364 30.8
Os04g0646050 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 2.3e-16 91.7 148 41.9
Actinidia31091 Actinidia chinensis HOM05D005926 ORTHO05D007001 5.4e-13 80.5 138 42.0
Pp3c6_4890 Physcomitrium patens HOM05D031130 ORTHO05D019295 1.3e-06 59.3 69 49.3
AagrBONN_evm.TU.Sc2ySwM_228.4811 Anthoceros agrestis HOM05D005926 ORTHO05D007001 2.9e-06 58.2 377 26.5


User provided reference genes

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