Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031268 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 0.0e+00 1961.4 1032 100.0
CSS0046739 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 0.0e+00 1849.3 1032 95.4
Actinidia06487 Actinidia chinensis HOM05D005365 ORTHO05D006910 0.0e+00 1572.4 1041 78.8
Dinv19044 Davidia involucrata HOM05D005365 ORTHO05D006910 0.0e+00 1504.2 1041 76.4
vmacro07709 Vaccinium macrocarpon HOM05D005365 ORTHO05D006910 0.0e+00 1446.0 1050 75.1
Lj2C520T1 Lonicera japonica HOM05D005365 ORTHO05D006910 0.0e+00 1414.4 1038 72.8
Hma1.2p1_1583F.1_g291990 Hydrangea macrophylla HOM05D005365 ORTHO05D006910 0.0e+00 1383.6 950 75.7
GSVIVG01014028001 Vitis vinifera HOM05D005365 ORTHO05D006910 0.0e+00 1377.1 1037 71.1
Cfa007794 Carpinus fangiana HOM05D005365 ORTHO05D006910 0.0e+00 1370.5 1017 69.9
TAR374G0610 Trochodendron aralioides HOM05D005365 ORTHO05D006910 0.0e+00 1363.2 1012 70.6
QL02p059099 Quercus lobata HOM05D005365 ORTHO05D006910 0.0e+00 1349.7 1144 64.9
Prupe.3G017700 Prunus persica HOM05D005365 ORTHO05D006910 0.0e+00 1339.7 1036 68.7
Nn4g24353 Nelumbo nucifera HOM05D005365 ORTHO05D006910 0.0e+00 1333.9 1027 67.9
Haze_14277 Corylus avellana HOM05D005365 ORTHO05D006910 0.0e+00 1326.6 1040 67.4
MD09G1270700 Malus domestica HOM05D005365 ORTHO05D006910 0.0e+00 1326.2 1032 68.2
MD17G1268900 Malus domestica HOM05D005365 ORTHO05D006910 0.0e+00 1320.4 1035 68.4
CiPaw.03G073200 Carya illinoinensis HOM05D005365 ORTHO05D006910 0.0e+00 1316.2 1031 69.5
Ciclev10010965m.g Citrus clementina HOM05D005365 ORTHO05D006910 0.0e+00 1308.5 1039 68.5
Potri.004G085500 Populus trichocarpa HOM05D005365 ORTHO05D006910 0.0e+00 1305.0 1054 67.2
Gorai.007G187500 Gossypium raimondii HOM05D005365 ORTHO05D006910 0.0e+00 1303.1 1051 66.4
Duzib133G0311 Durio zibethinus HOM05D005365 ORTHO05D006910 0.0e+00 1302.7 1047 66.6
TWI77G0914 Tripterygium wilfordii HOM05D005365 ORTHO05D006910 0.0e+00 1297.3 980 69.4
Cpa.g.sc116.71 Carica papaya HOM05D005365 ORTHO05D006910 0.0e+00 1292.3 1040 66.2
FAN26G1336 Fragaria x ananassa HOM05D005365 ORTHO05D006910 0.0e+00 1289.6 1031 67.0
Atru.chr1.1986 Acer truncatum HOM05D005365 ORTHO05D006910 0.0e+00 1288.5 1036 67.8
Manes.03G027200 Manihot esculenta HOM05D005365 ORTHO05D006910 0.0e+00 1286.9 1024 66.7
Solyc11g011370.2 Solanum lycopersicum HOM05D005365 ORTHO05D006910 0.0e+00 1284.2 1003 66.9
Nitab4.5_0012785g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 0.0e+00 1279.6 1046 65.2
Sopen11g006160 Solanum pennellii HOM05D005365 ORTHO05D006910 0.0e+00 1279.6 1003 66.4
RcHm_v2.0_Chr3g0491161 Rosa chinensis HOM05D005365 ORTHO05D006910 0.0e+00 1276.2 1041 67.0
PSO478G2448 Papaver somniferum HOM05D005365 ORTHO05D006910 0.0e+00 1264.2 1030 66.2
Aqoxy2G03929 Aquilegia oxysepala HOM05D005365 ORTHO05D006910 0.0e+00 1263.4 1039 64.6
PSO017G3744 Papaver somniferum HOM05D005365 ORTHO05D006910 0.0e+00 1262.7 1030 66.0
Thecc.04G055200 Theobroma cacao HOM05D005365 ORTHO05D006910 0.0e+00 1262.3 992 67.6
FAN19G1822 Fragaria x ananassa HOM05D005365 ORTHO05D006910 0.0e+00 1260.4 1004 66.9
CAN.G222.54 Capsicum annuum HOM05D005365 ORTHO05D006910 0.0e+00 1257.7 1001 65.7
Peaxi162Scf00562g00038 Petunia axillaris HOM05D005365 ORTHO05D006910 0.0e+00 1255.4 1036 64.2
Glyma.11G215600 Glycine max HOM05D005365 ORTHO05D006910 0.0e+00 1241.1 1019 65.5
MSTRG.15661 Avicennia marina HOM05D005365 ORTHO05D006910 0.0e+00 1238.4 1035 64.3
Cc07_g13300 Coffea canephora HOM05D005365 ORTHO05D006910 0.0e+00 1230.7 1038 64.5
ECA238G2923 Erigeron canadensis HOM05D005365 ORTHO05D006910 0.0e+00 1228.4 1033 64.1
Glyma.18G041000 Glycine max HOM05D005365 ORTHO05D006910 0.0e+00 1228.4 1036 64.3
Gohir.D11G174900 Gossypium hirsutum HOM05D005365 ORTHO05D006910 0.0e+00 1226.1 934 68.1
arahy.Tifrunner.gnm1.ann1.WJY350 Arachis hypogaea HOM05D005365 ORTHO05D006910 0.0e+00 1225.7 1019 64.4
Lj6g0003323 Lotus japonicus HOM05D005365 ORTHO05D006910 0.0e+00 1225.7 975 66.1
Ca_17092_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 0.0e+00 1224.5 1017 64.6
Phvul.001G229600 Phaseolus vulgaris HOM05D005365 ORTHO05D006910 0.0e+00 1216.4 1049 63.8
Sabra04G0056600 Salix brachista HOM05D005365 ORTHO05D006910 0.0e+00 1214.9 1061 63.5
Medtr3g065300 Medicago truncatula HOM05D005365 ORTHO05D006910 0.0e+00 1210.3 1038 63.7
Eucgr.F02871 Eucalyptus grandis HOM05D005365 ORTHO05D006910 0.0e+00 1209.5 1047 62.7
arahy.Tifrunner.gnm1.ann1.MH7SY7 Arachis hypogaea HOM05D005365 ORTHO05D006910 0.0e+00 1209.1 1019 63.5
EL10Ac2g03189 Beta vulgaris HOM05D005365 ORTHO05D006910 0.0e+00 1208.7 1038 63.3
AUR62018225 Chenopodium quinoa HOM05D005365 ORTHO05D006910 0.0e+00 1206.0 1038 62.4
VMungo1383G2900 Vigna mungo HOM05D005365 ORTHO05D006910 0.0e+00 1205.7 1036 62.8
DCAR_028454 Daucus carota HOM05D005365 ORTHO05D006910 0.0e+00 1204.9 1040 63.0
ClCG03G008820 Citrullus lanatus HOM05D005365 ORTHO05D006910 0.0e+00 1204.1 1017 62.7
Lsat_1_v5_gn_2_68700 Lactuca sativa HOM05D005365 ORTHO05D006910 0.0e+00 1204.1 1035 62.5
Lalb_Chr15g0084951 Lupinus albus HOM05D005365 ORTHO05D006910 0.0e+00 1194.9 1035 62.9
AUR62037789 Chenopodium quinoa HOM05D005365 ORTHO05D006910 0.0e+00 1194.5 1039 62.1
CANSAT80G2352 Cannabis sativa HOM05D005365 ORTHO05D006910 0.0e+00 1191.0 1039 62.8
MELO3C022831.2 Cucumis melo HOM05D005365 ORTHO05D006910 0.0e+00 1187.9 1011 62.4
Psat5g120520 Pisum sativum HOM05D005365 ORTHO05D006910 0.0e+00 1186.4 1012 62.5
CsaV3_5G023940 Cucumis sativus L. HOM05D005365 ORTHO05D006910 0.0e+00 1181.4 1014 62.2
PGR004G1341 Punica granatum HOM05D005365 ORTHO05D006910 0.0e+00 1175.6 1035 63.5
CARHR215230 Cardamine hirsuta HOM05D005365 ORTHO05D006910 0.0e+00 1167.1 1049 60.5
Migut.K00918 Erythranthe guttata HOM05D005365 ORTHO05D006910 0.0e+00 1165.6 1038 61.3
THA.LOC104805627 Tarenaya hassleriana HOM05D005365 ORTHO05D006910 0.0e+00 1158.7 1064 61.3
Aa31LG9G17470 Aethionema arabicum HOM05D005365 ORTHO05D006910 0.0e+00 1154.4 1048 60.7
SGA_v2.0_scaffold45G17160 Striga asiatica HOM05D005365 ORTHO05D006910 0.0e+00 1154.0 1064 58.6
Hund13093 Selenicereus undatus HOM05D005365 ORTHO05D006910 0.0e+00 1153.7 1030 60.4
Ca_17099_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 0.0e+00 1147.5 1017 62.0
Sp7g04480 Schrenkiella parvula HOM05D005365 ORTHO05D006910 0.0e+00 1136.3 1058 59.3
AL7G46400 Arabidopsis lyrata HOM05D005365 ORTHO05D006910 0.0e+00 1129.4 1044 58.8
Thhalv10027629m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 0.0e+00 1127.5 1061 59.3
AT5G37630 Arabidopsis thaliana HOM05D005365 ORTHO05D006910 0.0e+00 1123.6 1039 58.8
Carub.0007s3279 Capsella rubella HOM05D005365 ORTHO05D006910 0.0e+00 1119.4 1055 58.3
A04p10780 Brassica napus HOM05D005365 ORTHO05D006910 0.0e+00 1119.0 1051 58.9
BraA04t16742Z Brassica rapa HOM05D005365 ORTHO05D006910 0.0e+00 1119.0 1051 58.9
ATR0753G168 Amborella trichopoda HOM05D005365 ORTHO05D006910 0.0e+00 1110.1 1024 58.6
Zm00001eb379890 Zea mays HOM05D005365 ORTHO05D006910 0.0e+00 1099.7 1038 57.4
BcaC02g09592 Brassica carinata HOM05D005365 ORTHO05D006910 0.0e+00 1096.6 1055 57.9
BolC4t26020H Brassica oleracea HOM05D005365 ORTHO05D006910 0.0e+00 1095.5 1055 57.9
BcaB06g27110 Brassica carinata HOM05D005365 ORTHO05D006910 0.0e+00 1090.9 1046 57.9
C04p44500 Brassica napus HOM05D005365 ORTHO05D006910 0.0e+00 1087.0 1080 56.7
MBI19_g22067_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 2.8e-311 1072.0 1168 53.6
Nitab4.5_0000201g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 6.1e-306 1054.3 928 62.0
Rhsim10G0178300 Rhododendron simsii HOM05D005365 ORTHO05D006910 5.2e-305 1051.2 1053 60.0
FAN23G0266 Fragaria x ananassa HOM05D005365 ORTHO05D006910 7.0e-294 1014.2 746 70.2
FvH4_1g30230 Fragaria vesca HOM05D005365 ORTHO05D006910 5.9e-293 1011.1 746 70.1
Actinidia17204 Actinidia chinensis HOM05D005365 ORTHO05D006910 1.3e-292 1010.0 653 78.4
CDE05G1264 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 5.2e-289 998.0 833 61.7
Gohir.A11G168700 Gossypium hirsutum HOM05D005365 ORTHO05D006910 3.3e-283 978.8 742 67.9
Ah.10g032430 Amaranthus hybridus HOM05D005365 ORTHO05D006910 4.9e-279 964.9 773 64.8
Sc11g0004580 Simmondsia chinensis HOM05D005365 ORTHO05D006910 3.5e-277 958.7 745 66.4
Sed0006074 Sechium edule HOM05D005365 ORTHO05D006910 6.6e-276 954.5 744 65.7
COL.COLO4_13431 Corchorus olitorius HOM05D005365 ORTHO05D006910 1.5e-264 916.8 1034 52.6
Dinv28185 Davidia involucrata HOM05D005365 ORTHO05D006910 5.3e-249 865.1 555 80.7
PGSC0003DMG400013306 Solanum tuberosum HOM05D005365 ORTHO05D006910 3.4e-232 809.3 671 63.8
unitig_0.g2645 Utricularia gibba HOM05D005365 ORTHO05D006910 1.1e-230 804.3 980 48.2
TPR.G24911 Trifolium pratense HOM05D005365 ORTHO05D006910 2.1e-205 720.3 559 66.0
HPP92_006138 Vanilla planifolia HOM05D005365 ORTHO05D006910 3.3e-203 713.0 603 62.2
Pp3c22_14670 Physcomitrium patens HOM05D005365 ORTHO05D006910 1.3e-194 684.5 1033 40.9
SEGI_16018 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 5.5e-190 669.1 713 52.2
Mapoly0032s0119 Marchantia polymorpha HOM05D005365 ORTHO05D006910 5.4e-177 625.9 883 42.2
GSVIVG01038363001 Vitis vinifera HOM05D005365 ORTHO05D006910 1.6e-176 624.4 428 72.9
SMO367G0263 Selaginella moellendorffii HOM05D005365 ORTHO05D006910 9.2e-169 598.6 920 39.5
Thhalv10027679m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 1.2e-160 571.6 673 51.4
AagrBONN_evm.TU.Sc2ySwM_228.4009 Anthoceros agrestis HOM05D005365 ORTHO05D006910 4.7e-157 559.7 986 38.1
Oeu012492.1 Olea europaea HOM05D005365 ORTHO05D006910 8.2e-101 372.9 792 38.1
Os06g0256000 Oryza sativa ssp. japonica HOM05D005365 ORTHO05D006910 1.5e-94 352.1 389 50.4
GSVIVG01038362001 Vitis vinifera HOM05D005365 ORTHO05D006910 1.8e-92 345.1 248 73.8
SEGI_18021 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 2.4e-92 344.7 302 58.6
Oeu012494.1 Olea europaea HOM05D005365 ORTHO05D006910 2.0e-86 325.1 239 68.6
SGA_v2.0_scaffold45G17195 Striga asiatica HOM05D005365 ORTHO05D006910 9.7e-86 322.8 356 50.3
arahy.Tifrunner.gnm1.ann1.MFZI3Y Arachis hypogaea HOM05D005365 ORTHO05D006910 1.7e-74 285.4 233 61.4
CBR_g39392 Chara braunii HOM05D000019 ORTHO05D000048 3.8e-74 284.3 418 38.5
MCO13G329 Micromonas commoda HOM05D005365 ORTHO05D006910 1.1e-73 282.7 771 28.3
CDE05G3412 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 2.3e-71 275.0 192 72.4
MBI19_g43231_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 5.4e-68 263.8 230 62.2
CAN.G691.4 Capsicum annuum HOM05D005365 ORTHO05D006910 8.6e-66 256.5 302 50.0
PRCOL_00005851 Prasinoderma coloniale HOM05D005365 ORTHO05D006910 2.8e-64 251.5 810 28.8
arahy.Tifrunner.gnm1.ann1.4TMU9W Arachis hypogaea HOM05D005365 ORTHO05D006910 5.7e-62 243.8 195 62.1
TPR.G674 Trifolium pratense HOM05D005365 ORTHO05D006910 1.1e-57 229.6 260 53.1
HPP92_006139 Vanilla planifolia HOM05D005365 ORTHO05D006910 2.2e-45 188.7 283 46.3
GSVIVG01030692001 Vitis vinifera HOM05D005365 ORTHO05D006910 1.5e-38 166.0 121 75.2
SGA_v2.0_scaffold45G17196 Striga asiatica HOM05D005365 ORTHO05D006910 1.3e-37 162.9 108 76.9
Gorai.005G096400 Gossypium raimondii HOM05D005365 ORTHO05D015145 1.4e-20 106.3 68 76.5
Gohir.D04G112220 Gossypium hirsutum HOM05D005365 ORTHO05D006910 3.2e-20 105.1 68 76.5
Nn1g00453 Nelumbo nucifera HOM05D005365 ORTHO05D006910 1.6e-19 102.8 64 76.6
Psat1g154520 Pisum sativum HOM05D005365 ORTHO05D006910 2.1e-19 102.4 86 60.5
Cfa023924 Carpinus fangiana HOM05D005365 ORTHO05D006910 1.9e-17 95.9 617 22.9
Psat7g195800 Pisum sativum HOM05D005365 ORTHO05D006910 3.1e-15 88.6 75 68.0
TPR.G7041 Trifolium pratense HOM05D005365 ORTHO05D006910 3.1e-15 88.6 52 82.7
GSVIVG01030691001 Vitis vinifera HOM05D005365 ORTHO05D006910 1.2e-14 86.7 70 60.0
Gohir.D09G013833 Gossypium hirsutum HOM05D005365 ORTHO05D015145 2.1e-11 75.9 46 80.4
SEGI_04861 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 8.7e-10 70.5 79 46.8
Sabra17G0109200 Salix brachista HOM05D005365 ORTHO05D349400 1.4e-07 63.2 87 47.1


User provided reference genes

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