Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031244 Camellia sinensis var. sinensis HOM05D001336 ORTHO05D001211 4.5e-89 331.3 170 100.0
Dinv25873 Davidia involucrata HOM05D001336 ORTHO05D001211 1.1e-39 167.2 114 74.6
Actinidia04760 Actinidia chinensis HOM05D001336 ORTHO05D001211 6.2e-38 161.4 105 79.0
Dinv41075 Davidia involucrata HOM05D001336 ORTHO05D001211 5.2e-37 158.3 105 77.1
MSTRG.1090 Avicennia marina HOM05D001336 ORTHO05D001211 6.4e-35 151.4 105 72.4
Lj7A375T59 Lonicera japonica HOM05D001336 ORTHO05D001211 6.4e-35 151.4 125 65.6
Prupe.8G032700 Prunus persica HOM05D001336 ORTHO05D001211 1.2e-33 147.1 109 69.7
Haze_17761 Corylus avellana HOM05D001336 ORTHO05D001211 1.6e-33 146.7 105 72.4
CiPaw.15G015400 Carya illinoinensis HOM05D001336 ORTHO05D001211 4.6e-33 145.2 103 73.8
GSVIVG01034544001 Vitis vinifera HOM05D001336 ORTHO05D001211 4.6e-33 145.2 106 75.5
DCAR_014438 Daucus carota HOM05D001336 ORTHO05D001211 2.3e-32 142.9 107 68.2
SGA_v2.0_scaffold48G18005 Striga asiatica HOM05D001336 ORTHO05D001211 3.9e-32 142.1 106 68.9
TAR381G0385 Trochodendron aralioides HOM05D001336 ORTHO05D001211 3.9e-32 142.1 105 67.6
SalBow7G2140 Salvia bowleyana HOM05D001336 ORTHO05D001211 1.9e-31 139.8 107 71.0
Cpa.g.sc21.209 Carica papaya HOM05D001336 ORTHO05D001211 4.3e-31 138.7 104 69.2
FvH4_2g13560 Fragaria vesca HOM05D001336 ORTHO05D001211 5.6e-31 138.3 109 64.2
Oeu046043.1 Olea europaea HOM05D001336 ORTHO05D001211 1.2e-30 137.1 108 66.7
RcHm_v2.0_Chr6g0275171 Rosa chinensis HOM05D001336 ORTHO05D001211 1.2e-30 137.1 109 64.2
PGR042G0120 Punica granatum HOM05D001336 ORTHO05D001211 4.7e-30 135.2 105 69.5
Nn5g28761 Nelumbo nucifera HOM05D001336 ORTHO05D001211 8.1e-30 134.4 105 65.7
Ciclev10000559m.g Citrus clementina HOM05D001336 ORTHO05D001211 1.8e-29 133.3 145 53.1
Sc02g0003980 Simmondsia chinensis HOM05D001336 ORTHO05D001211 2.3e-29 132.9 105 68.6
HanXRQChr10g0278961 Helianthus annuus HOM05D001336 ORTHO05D001211 3.1e-29 132.5 113 61.1
HanXRQChr10g0278951 Helianthus annuus HOM05D001336 ORTHO05D001211 5.2e-29 131.7 100 65.0
Thecc.08G153900 Theobroma cacao HOM05D001336 ORTHO05D001211 5.2e-29 131.7 106 68.9
Solyc04g071540.4 Solanum lycopersicum HOM05D001336 ORTHO05D001211 8.9e-29 131.0 106 63.2
Sopen04g027520 Solanum pennellii HOM05D001336 ORTHO05D001211 8.9e-29 131.0 106 63.2
Nitab4.5_0001062g0110 Nicotiana tabacum HOM05D001336 ORTHO05D001211 3.4e-28 129.0 106 66.0
Cc10_g14450 Coffea canephora HOM05D001336 ORTHO05D001211 5.8e-28 128.3 106 62.3
MBI09_g38855_MAGBIO Magnolia biondii HOM05D001336 ORTHO05D001211 7.6e-28 127.9 114 61.4
COL.COLO4_29848 Corchorus olitorius HOM05D001336 ORTHO05D001211 1.3e-27 127.1 114 64.0
MD10G1026500 Malus domestica HOM05D001336 ORTHO05D001211 1.7e-27 126.7 115 60.9
Aqoxy5G02066 Aquilegia oxysepala HOM05D001336 ORTHO05D001211 2.9e-27 125.9 105 60.0
TWI34G1494 Tripterygium wilfordii HOM05D001336 ORTHO05D001211 2.9e-27 125.9 106 67.9
Sabra05G0147600 Salix brachista HOM05D001336 ORTHO05D001211 3.8e-27 125.6 107 64.5
Duzib116G0488 Durio zibethinus HOM05D001336 ORTHO05D001211 4.9e-27 125.2 114 64.9
MD05G1027200 Malus domestica HOM05D001336 ORTHO05D001211 4.9e-27 125.2 95 67.4
Lj5g0024627 Lotus japonicus HOM05D001336 ORTHO05D001211 8.4e-27 124.4 103 67.0
Sabra02G0053200 Salix brachista HOM05D001336 ORTHO05D001211 1.1e-26 124.0 115 58.3
vmacro01458 Vaccinium macrocarpon HOM05D001336 ORTHO05D001211 1.1e-26 124.0 84 76.2
Eucgr.F02699 Eucalyptus grandis HOM05D001336 ORTHO05D001211 1.4e-26 123.6 109 60.6
Psat6g200840 Pisum sativum HOM05D001336 ORTHO05D001211 1.4e-26 123.6 105 64.8
ECA246G4709 Erigeron canadensis HOM05D001336 ORTHO05D001211 1.9e-26 123.2 109 58.7
Gorai.009G254800 Gossypium raimondii HOM05D001336 ORTHO05D001211 1.9e-26 123.2 114 63.2
Gohir.D05G245000 Gossypium hirsutum HOM05D001336 ORTHO05D001211 2.4e-26 122.9 114 63.2
Nitab4.5_0002497g0010 Nicotiana tabacum HOM05D001336 ORTHO05D001211 2.4e-26 122.9 124 57.3
Medtr1g098640 Medicago truncatula HOM05D001336 ORTHO05D001211 4.1e-26 122.1 105 62.9
Potri.002G067100 Populus trichocarpa HOM05D001336 ORTHO05D001211 4.1e-26 122.1 105 61.9
TPR.G17042 Trifolium pratense HOM05D001336 ORTHO05D001211 4.1e-26 122.1 105 63.8
unitig_82.g27123 Utricularia gibba HOM05D001336 ORTHO05D001211 4.1e-26 122.1 107 61.7
Gohir.A05G244000 Gossypium hirsutum HOM05D001336 ORTHO05D001211 5.4e-26 121.7 114 62.3
Atru.chr13.2089 Acer truncatum HOM05D001336 ORTHO05D001211 1.2e-25 120.6 113 59.3
FAN27G1886 Fragaria x ananassa HOM05D001336 ORTHO05D001211 1.6e-25 120.2 97 62.9
HPP92_001990 Vanilla planifolia HOM05D001336 ORTHO05D001211 1.6e-25 120.2 105 60.0
Glyma.10G224000 Glycine max HOM05D001336 ORTHO05D001211 2.1e-25 119.8 106 67.9
Potri.005G193100 Populus trichocarpa HOM05D001336 ORTHO05D001211 7.8e-25 117.9 105 61.9
AUR62028490 Chenopodium quinoa HOM05D001336 ORTHO05D001211 1.7e-24 116.7 107 57.9
AUR62026689 Chenopodium quinoa HOM05D001336 ORTHO05D001211 2.3e-24 116.3 107 57.0
Ca_10679_v3 Cicer arietinum L. HOM05D001336 ORTHO05D001211 2.3e-24 116.3 105 62.9
Psat6g238240 Pisum sativum HOM05D001336 ORTHO05D001211 3.0e-24 115.9 112 59.8
THA.LOC104803035 Tarenaya hassleriana HOM05D001336 ORTHO05D001211 3.0e-24 115.9 106 62.3
AUR62013600 Chenopodium quinoa HOM05D001336 ORTHO05D001211 5.1e-24 115.2 106 57.5
ATR0820G028 Amborella trichopoda HOM05D001336 ORTHO05D000153 6.6e-24 114.8 115 52.2
QL02p038960 Quercus lobata HOM05D001336 ORTHO05D001211 8.6e-24 114.4 88 69.3
VMungo0720G3164 Vigna mungo HOM05D001336 ORTHO05D001211 2.5e-23 112.8 105 63.8
Glyma.20G167900 Glycine max HOM05D001336 ORTHO05D001211 4.3e-23 112.1 105 62.9
Phvul.007G080800 Phaseolus vulgaris HOM05D001336 ORTHO05D001211 5.6e-23 111.7 105 62.9
Lj2g0005253 Lotus japonicus HOM05D001336 ORTHO05D001211 7.3e-23 111.3 105 61.0
Peaxi162Scf00599g00218 Petunia axillaris HOM05D001336 ORTHO05D001211 7.3e-23 111.3 93 61.3
EL10Ac1g01563 Beta vulgaris HOM05D001336 ORTHO05D001211 9.6e-23 110.9 94 60.6
CsaV3_6G005200 Cucumis sativus L. HOM05D001336 ORTHO05D001211 1.2e-22 110.5 104 60.6
Ah.05g167990 Amaranthus hybridus HOM05D001336 ORTHO05D001211 2.1e-22 109.8 106 55.7
Glyma.02G081000 Glycine max HOM05D001336 ORTHO05D001211 2.1e-22 109.8 105 60.0
Lsat_1_v5_gn_6_100401 Lactuca sativa HOM05D001336 ORTHO05D001211 2.1e-22 109.8 97 60.8
CANSAT25G1624 Cannabis sativa HOM05D001336 ORTHO05D001211 2.8e-22 109.4 105 61.9
Zm00001eb146680 Zea mays HOM05D001336 ORTHO05D001211 3.6e-22 109.0 93 63.4
A10p07800 Brassica napus HOM05D001336 ORTHO05D001211 4.7e-22 108.6 111 56.8
BraSC36t46022Z Brassica rapa HOM05D001336 ORTHO05D001211 4.7e-22 108.6 111 56.8
BcaC08g42815 Brassica carinata HOM05D001336 ORTHO05D001211 1.4e-21 107.1 109 55.0
C06p00270 Brassica napus HOM05D001336 ORTHO05D001211 1.4e-21 107.1 109 55.0
Sed0022213 Sechium edule HOM05D001336 ORTHO05D001211 1.4e-21 107.1 104 56.7
BcaB07g33980 Brassica carinata HOM05D001336 ORTHO05D001211 4.0e-21 105.5 110 55.5
ClCG08G007010 Citrullus lanatus HOM05D001336 ORTHO05D001211 6.9e-21 104.8 88 63.6
Lalb_Chr21g0305511 Lupinus albus HOM05D001336 ORTHO05D001211 8.9e-21 104.4 109 57.8
Manes.18G092800 Manihot esculenta HOM05D001336 ORTHO05D001211 1.2e-20 104.0 107 57.9
FAN24G0876 Fragaria x ananassa HOM05D001336 ORTHO05D001211 1.5e-20 103.6 129 47.3
Sp1g32510 Schrenkiella parvula HOM05D001336 ORTHO05D001211 1.5e-20 103.6 110 55.5
MELO3C008339.2 Cucumis melo HOM05D001336 ORTHO05D001211 2.0e-20 103.2 89 61.8
Os01g0867600 Oryza sativa ssp. japonica HOM05D001336 ORTHO05D001211 2.6e-20 102.8 93 60.2
Aa31LG6G9890 Aethionema arabicum HOM05D001336 ORTHO05D001211 3.4e-20 102.4 110 55.5
arahy.Tifrunner.gnm1.ann1.7NV4RJ Arachis hypogaea HOM05D001336 ORTHO05D001211 7.6e-20 101.3 93 62.4
arahy.Tifrunner.gnm1.ann1.X8HV17 Arachis hypogaea HOM05D001336 ORTHO05D001211 7.6e-20 101.3 93 62.4
Hund17443 Selenicereus undatus HOM05D001336 ORTHO05D001211 7.6e-20 101.3 97 62.9
FAN15G2668 Fragaria x ananassa HOM05D001336 ORTHO05D001211 9.9e-20 100.9 129 46.5
Phvul.004G093900 Phaseolus vulgaris HOM05D001336 ORTHO05D001211 1.3e-19 100.5 105 56.2
Thhalv10005442m.g Eutrema salsugineum HOM05D001336 ORTHO05D001211 4.9e-19 98.6 106 54.7
AL1G51660 Arabidopsis lyrata HOM05D001336 ORTHO05D001211 7.1e-18 94.7 112 51.8
Carub.0001s3461 Capsella rubella HOM05D001336 ORTHO05D001211 1.6e-17 93.6 110 51.8
AT1G43620 Arabidopsis thaliana HOM05D001336 ORTHO05D001211 3.5e-17 92.4 112 51.8
CARHR035650 Cardamine hirsuta HOM05D001336 ORTHO05D001211 3.5e-17 92.4 110 51.8
arahy.Tifrunner.gnm1.ann1.JSVJ2H Arachis hypogaea HOM05D001336 ORTHO05D001211 1.0e-16 90.9 79 59.5
HPP92_013764 Vanilla planifolia HOM05D001336 ORTHO05D001211 2.5e-15 86.3 102 50.0
arahy.Tifrunner.gnm1.ann1.GJL8UB Arachis hypogaea HOM05D001336 ORTHO05D001211 8.1e-14 81.3 87 56.3
arahy.Tifrunner.gnm1.ann1.1SB772 Arachis hypogaea HOM05D006203 ORTHO05D007675 1.8e-13 80.1 87 55.2
AUR62026696 Chenopodium quinoa HOM05D001336 ORTHO05D001211 4.5e-12 75.5 66 59.1
AUR62013593 Chenopodium quinoa HOM05D001336 ORTHO05D001211 1.3e-11 73.9 66 57.6
CDE08G0506 Ceratophyllum demersum HOM05D001336 ORTHO05D001211 1.1e-10 70.9 90 52.2
Ah.05g167910 Amaranthus hybridus HOM05D001336 ORTHO05D001211 3.2e-10 69.3 82 47.6
CDE02G0826 Ceratophyllum demersum HOM05D001336 ORTHO05D001211 3.2e-10 69.3 90 51.1
Pp3c2_18500 Physcomitrium patens HOM05D001336 ORTHO05D001211 2.7e-09 66.2 98 38.8
Glyma.17G119100 Glycine max HOM05D001336 ORTHO05D001211 5.1e-08 62.0 64 59.4
Pp3c4_26740 Physcomitrium patens HOM05D001336 ORTHO05D001211 5.1e-08 62.0 97 40.2
Pp3c10_2210 Physcomitrium patens HOM05D001336 ORTHO05D001211 6.7e-08 61.6 127 36.2
AagrBONN_evm.TU.Sc2ySwM_228.1442 Anthoceros agrestis HOM05D001336 ORTHO05D001211 8.7e-08 61.2 89 34.8
HPP92_025963 Vanilla planifolia HOM05D001336 ORTHO05D001211 8.7e-08 61.2 113 38.1
Pp3c9_1480 Physcomitrium patens HOM05D001336 ORTHO05D001211 1.5e-07 60.5 92 34.8
SalBow3G4149 Salvia bowleyana HOM05D001336 ORTHO05D001211 1.5e-07 60.5 85 38.8
Pp3c26_4700 Physcomitrium patens HOM05D001336 ORTHO05D001211 2.5e-07 59.7 97 36.1
Nitab4.5_0001056g0050 Nicotiana tabacum HOM05D001336 ORTHO05D001211 3.3e-07 59.3 91 36.3
BraA01t04403Z Brassica rapa HOM05D001336 ORTHO05D001211 5.6e-07 58.5 114 31.6
Os07g0419500 Oryza sativa ssp. japonica HOM05D001336 ORTHO05D001211 5.6e-07 58.5 99 34.3
CDE05G3579 Ceratophyllum demersum HOM05D001336 ORTHO05D001211 7.4e-07 58.2 89 33.7
CDE11G0011 Ceratophyllum demersum HOM05D001336 ORTHO05D001211 7.4e-07 58.2 96 35.4
Oeu051273.1 Olea europaea HOM05D001336 ORTHO05D001211 7.4e-07 58.2 34 76.5
SEGI_02555 Sequoiadendron giganteum HOM05D001336 ORTHO05D001211 7.4e-07 58.2 91 39.6
C03p42590 Brassica napus HOM05D001336 ORTHO05D001211 9.6e-07 57.8 90 37.8
unitig_85.g27276 Utricularia gibba HOM05D001336 ORTHO05D001211 9.6e-07 57.8 91 37.4
BolC3t16529H Brassica oleracea HOM05D001336 ORTHO05D001211 1.3e-06 57.4 90 37.8
Thhalv10020288m.g Eutrema salsugineum HOM05D001336 ORTHO05D001211 1.6e-06 57.0 92 35.9
CAN.G941.42 Capsicum annuum HOM05D001336 ORTHO05D001211 2.1e-06 56.6 140 30.0
CiPaw.03G151900 Carya illinoinensis HOM05D001336 ORTHO05D001211 2.1e-06 56.6 162 27.2
HPP92_007062 Vanilla planifolia HOM05D001336 ORTHO05D001211 2.8e-06 56.2 120 30.0
BcaB01g02348 Brassica carinata HOM05D001336 ORTHO05D001211 3.7e-06 55.8 89 34.8
MBI10_g09192_MAGBIO Magnolia biondii HOM05D001336 ORTHO05D001211 3.7e-06 55.8 89 34.8
Sp3g05960 Schrenkiella parvula HOM05D001336 ORTHO05D001211 3.7e-06 55.8 92 37.0
THA.LOC104802681 Tarenaya hassleriana HOM05D001336 ORTHO05D001211 3.7e-06 55.8 89 32.6
BNapus_Darmor_BZH_scaffold_109p00290 Brassica napus HOM05D001336 ORTHO05D001211 4.8e-06 55.5 116 31.9
BolC5t34684H Brassica oleracea HOM05D001336 ORTHO05D001211 4.8e-06 55.5 94 38.3
DCAR_005506 Daucus carota HOM05D001336 ORTHO05D001211 4.8e-06 55.5 80 36.2
CARHR081610 Cardamine hirsuta HOM05D001336 ORTHO05D001211 6.2e-06 55.1 92 35.9
Hund17440 Selenicereus undatus HOM05D001336 ORTHO05D001211 6.2e-06 55.1 56 48.2
THA.LOC104818941 Tarenaya hassleriana HOM05D001336 ORTHO05D001211 6.2e-06 55.1 93 36.6
AL3G18230 Arabidopsis lyrata HOM05D001336 ORTHO05D001211 8.1e-06 54.7 90 35.6
arahy.Tifrunner.gnm1.ann1.AE82WW Arachis hypogaea HOM05D001336 ORTHO05D001211 8.1e-06 54.7 109 33.9
arahy.Tifrunner.gnm1.ann1.KG7SDJ Arachis hypogaea HOM05D001336 ORTHO05D001211 8.1e-06 54.7 109 33.9
BcaC09g47931 Brassica carinata HOM05D001336 ORTHO05D001211 8.1e-06 54.7 94 35.1
DCAR_004710 Daucus carota HOM05D001336 ORTHO05D001211 8.1e-06 54.7 91 36.3
Gohir.D07G161500 Gossypium hirsutum HOM05D001336 ORTHO05D001211 8.1e-06 54.7 96 31.2
MBI07_g19558_MAGBIO Magnolia biondii HOM05D001336 ORTHO05D001211 8.1e-06 54.7 91 37.4
Nn1g03136 Nelumbo nucifera HOM05D001336 ORTHO05D001211 8.1e-06 54.7 112 33.0
Nitab4.5_0000846g0050 Nicotiana tabacum HOM05D001336 ORTHO05D001211 8.1e-06 54.7 89 32.6


User provided reference genes

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