Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031230 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 1.2e-51 206.1 95 100.0
Rhsim04G0023700 Rhododendron simsii HOM05D006017 ORTHO05D007821 4.4e-25 117.9 108 56.5
CSS0036883 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 7.5e-25 117.1 105 59.0
Actinidia18784 Actinidia chinensis HOM05D006017 ORTHO05D007821 1.7e-24 115.9 108 55.6
CSS0021316 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 1.8e-23 112.5 108 54.6
Nn1g04303 Nelumbo nucifera HOM05D006017 ORTHO05D007821 2.4e-23 112.1 105 55.2
vmacro09508 Vaccinium macrocarpon HOM05D006017 ORTHO05D007821 2.4e-23 112.1 108 53.7
GSVIVG01014248001 Vitis vinifera HOM05D006017 ORTHO05D007821 2.4e-23 112.1 105 56.2
Atru.chr2.2344 Acer truncatum HOM05D006017 ORTHO05D007821 3.1e-23 111.7 105 55.2
Eucgr.F01185 Eucalyptus grandis HOM05D006017 ORTHO05D007821 1.2e-22 109.8 105 54.3
Dinv14956 Davidia involucrata HOM05D006017 ORTHO05D007821 1.6e-22 109.4 108 52.8
AUR62019513 Chenopodium quinoa HOM05D006017 ORTHO05D007821 2.0e-22 109.0 108 50.9
Solyc12g014100.2 Solanum lycopersicum HOM05D006017 ORTHO05D007821 2.0e-22 109.0 105 53.3
Sopen12g005880 Solanum pennellii HOM05D006017 ORTHO05D007821 2.0e-22 109.0 105 53.3
PGSC0003DMG400015330 Solanum tuberosum HOM05D006017 ORTHO05D007821 2.0e-22 109.0 105 53.3
AUR62036125 Chenopodium quinoa HOM05D006017 ORTHO05D007821 2.7e-22 108.6 108 50.9
CAN.G739.4 Capsicum annuum HOM05D006017 ORTHO05D007821 3.5e-22 108.2 105 52.4
Haze_09368 Corylus avellana HOM05D006017 ORTHO05D007821 3.5e-22 108.2 108 52.8
Eucgr.F01184 Eucalyptus grandis HOM05D006017 ORTHO05D007821 3.5e-22 108.2 105 53.3
Cfa019614 Carpinus fangiana HOM05D006017 ORTHO05D007821 1.0e-21 106.7 105 54.3
Ah.04g164440 Amaranthus hybridus HOM05D006017 ORTHO05D007821 1.3e-21 106.3 108 50.0
EL10Ac4g08290 Beta vulgaris HOM05D006017 ORTHO05D007821 1.3e-21 106.3 105 51.4
CiPaw.12G115700 Carya illinoinensis HOM05D006017 ORTHO05D007821 1.3e-21 106.3 108 51.9
FAN16G2700 Fragaria x ananassa HOM05D006017 ORTHO05D007821 1.3e-21 106.3 108 51.9
FAN21G1753 Fragaria x ananassa HOM05D006017 ORTHO05D007821 1.3e-21 106.3 108 51.9
Peaxi162Scf00000g00262 Petunia axillaris HOM05D006017 ORTHO05D007821 1.7e-21 105.9 105 52.4
Hma1.2p1_0416F.1_g148570 Hydrangea macrophylla HOM05D006017 ORTHO05D007821 2.2e-21 105.5 105 53.3
PSO541G6385 Papaver somniferum HOM05D006017 ORTHO05D007821 2.2e-21 105.5 105 52.4
PSO675G4947 Papaver somniferum HOM05D006017 ORTHO05D007821 2.2e-21 105.5 105 52.4
RcHm_v2.0_Chr5g0031821 Rosa chinensis HOM05D006017 ORTHO05D007821 2.2e-21 105.5 108 51.9
Cc05_g11510 Coffea canephora HOM05D006017 ORTHO05D007821 2.9e-21 105.1 108 50.0
MD03G1237300 Malus domestica HOM05D006017 ORTHO05D007821 2.9e-21 105.1 107 51.4
Hund22764 Selenicereus undatus HOM05D006017 ORTHO05D007821 2.9e-21 105.1 105 52.4
Ca_23058_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 3.8e-21 104.8 105 53.3
Ca_30664_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 3.8e-21 104.8 105 53.3
HanXRQChr03g0070991 Helianthus annuus HOM05D006017 ORTHO05D007821 3.8e-21 104.8 105 52.4
Medtr8g463280 Medicago truncatula HOM05D006017 ORTHO05D007821 5.0e-21 104.4 105 52.4
Ciclev10008509m.g Citrus clementina HOM05D006017 ORTHO05D007821 6.5e-21 104.0 105 51.4
Glyma.12G158600 Glycine max HOM05D006017 ORTHO05D007821 6.5e-21 104.0 105 51.4
Aqoxy1G02214 Aquilegia oxysepala HOM05D006017 ORTHO05D007821 8.5e-21 103.6 105 51.4
FAN11G3087 Fragaria x ananassa HOM05D006017 ORTHO05D007821 8.5e-21 103.6 108 50.9
Phvul.011G148800 Phaseolus vulgaris HOM05D006017 ORTHO05D007821 8.5e-21 103.6 105 52.4
Prupe.4G172100 Prunus persica HOM05D006017 ORTHO05D007821 8.5e-21 103.6 105 54.3
TPR.G22540 Trifolium pratense HOM05D006017 ORTHO05D007821 8.5e-21 103.6 105 52.4
TWI38G0439 Tripterygium wilfordii HOM05D006017 ORTHO05D007821 8.5e-21 103.6 105 53.3
Lj8A152T86 Lonicera japonica HOM05D006017 ORTHO05D007821 1.1e-20 103.2 108 49.1
Lalb_Chr03g0030841 Lupinus albus HOM05D006017 ORTHO05D007821 1.1e-20 103.2 112 49.1
Psat4g138640 Pisum sativum HOM05D006017 ORTHO05D007821 1.1e-20 103.2 105 52.4
DCAR_028453 Daucus carota HOM05D006017 ORTHO05D007821 1.9e-20 102.4 105 50.5
SGA_v2.0_scaffold73G24213 Striga asiatica HOM05D006017 ORTHO05D007821 1.9e-20 102.4 105 50.5
Sc03g0010290 Simmondsia chinensis HOM05D006017 ORTHO05D007821 2.5e-20 102.1 105 49.5
CiPaw.11G165400 Carya illinoinensis HOM05D006017 ORTHO05D007821 4.2e-20 101.3 108 49.1
Sabra16G0246500 Salix brachista HOM05D006017 ORTHO05D007821 4.2e-20 101.3 109 48.6
Sed0020976 Sechium edule HOM05D006017 ORTHO05D007821 4.2e-20 101.3 105 50.5
MSTRG.14945 Avicennia marina HOM05D006017 ORTHO05D007821 5.5e-20 100.9 105 52.4
Cpa.g.sc131.80 Carica papaya HOM05D006017 ORTHO05D007821 5.5e-20 100.9 105 49.5
Manes.03G103900 Manihot esculenta HOM05D006017 ORTHO05D007821 5.5e-20 100.9 105 50.5
Gohir.A01G059400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 7.2e-20 100.5 105 50.5
Gorai.002G065000 Gossypium raimondii HOM05D006017 ORTHO05D007821 7.2e-20 100.5 105 50.5
arahy.Tifrunner.gnm1.ann1.DSNA77 Arachis hypogaea HOM05D006017 ORTHO05D007821 9.4e-20 100.1 105 49.5
Glyma.06G234200 Glycine max HOM05D006017 ORTHO05D007821 9.4e-20 100.1 105 49.5
Lj3g0015312 Lotus japonicus HOM05D006017 ORTHO05D007821 9.4e-20 100.1 105 50.5
Nitab4.5_0003077g0020 Nicotiana tabacum HOM05D006017 ORTHO05D007821 9.4e-20 100.1 110 49.1
Potri.001G374100 Populus trichocarpa HOM05D006017 ORTHO05D007821 1.2e-19 99.8 109 48.6
VMungo1127G0952 Vigna mungo HOM05D006017 ORTHO05D007821 1.6e-19 99.4 105 48.6
AL8G29200 Arabidopsis lyrata HOM05D006017 ORTHO05D007821 2.1e-19 99.0 105 48.6
Lsat_1_v5_gn_9_98620 Lactuca sativa HOM05D006017 ORTHO05D007821 2.1e-19 99.0 105 48.6
MBI07_g06432_MAGBIO Magnolia biondii HOM05D006017 ORTHO05D007821 2.1e-19 99.0 105 50.5
Sp6g16110 Schrenkiella parvula HOM05D006017 ORTHO05D007821 2.1e-19 99.0 105 48.6
Gohir.D01G045400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 2.7e-19 98.6 105 49.5
THA.LOC104811882 Tarenaya hassleriana HOM05D006017 ORTHO05D007821 2.7e-19 98.6 105 48.6
Thecc.07G102400 Theobroma cacao HOM05D006017 ORTHO05D007821 2.7e-19 98.6 105 50.5
unitig_46.g18314 Utricularia gibba HOM05D006017 ORTHO05D007821 2.7e-19 98.6 111 47.7
ATR0749G089 Amborella trichopoda HOM05D006017 ORTHO05D007821 3.6e-19 98.2 105 49.5
BcaB05g22107 Brassica carinata HOM05D006017 ORTHO05D007821 3.6e-19 98.2 105 48.6
Thhalv10013691m.g Eutrema salsugineum HOM05D006017 ORTHO05D007821 3.6e-19 98.2 105 48.6
CsaV3_4G008430 Cucumis sativus L. HOM05D006017 ORTHO05D007821 4.7e-19 97.8 105 48.6
Migut.M00760 Erythranthe guttata HOM05D006017 ORTHO05D007821 4.7e-19 97.8 105 48.6
MELO3C016089.2 Cucumis melo HOM05D006017 ORTHO05D007821 6.1e-19 97.4 105 48.6
Carub.0008s1436 Capsella rubella HOM05D006017 ORTHO05D007821 8.0e-19 97.1 105 47.6
Aa31LG3G9950 Aethionema arabicum HOM05D006017 ORTHO05D007821 1.4e-18 96.3 105 47.6
ClCG07G009900 Citrullus lanatus HOM05D006017 ORTHO05D007821 1.4e-18 96.3 105 47.6
arahy.Tifrunner.gnm1.ann1.FV2XB3 Arachis hypogaea HOM05D006017 ORTHO05D007821 1.8e-18 95.9 105 48.6
ECA240G4517 Erigeron canadensis HOM05D006017 ORTHO05D007821 1.8e-18 95.9 105 47.6
BcaC03g14354 Brassica carinata HOM05D006017 ORTHO05D007821 2.3e-18 95.5 103 47.6
A02p10590 Brassica napus HOM05D006017 ORTHO05D007821 2.3e-18 95.5 103 47.6
C02p17670 Brassica napus HOM05D006017 ORTHO05D007821 2.3e-18 95.5 103 47.6
BolC2t07897H Brassica oleracea HOM05D006017 ORTHO05D007821 2.3e-18 95.5 103 47.6
BraA02t06124Z Brassica rapa HOM05D006017 ORTHO05D007821 2.3e-18 95.5 103 47.6
CANSAT35G1773 Cannabis sativa HOM05D006017 ORTHO05D007821 2.3e-18 95.5 108 46.3
AT5G54080 Arabidopsis thaliana HOM05D006017 ORTHO05D007821 3.0e-18 95.1 105 47.6
PGR083G0123 Punica granatum HOM05D006017 ORTHO05D007821 3.0e-18 95.1 105 47.6
CDE02G3882 Ceratophyllum demersum HOM05D006017 ORTHO05D007821 8.8e-18 93.6 105 46.7
CARHR267270 Cardamine hirsuta HOM05D006017 ORTHO05D007821 2.0e-17 92.4 105 45.7
Oeu061327.1 Olea europaea HOM05D006017 ORTHO05D007821 2.0e-17 92.4 141 40.4
Oeu061328.1 Olea europaea HOM05D006017 ORTHO05D007821 2.0e-17 92.4 141 40.4
SEGI_01915 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 5.7e-17 90.9 103 44.7
QL08p027671 Quercus lobata HOM05D006017 ORTHO05D007821 1.3e-16 89.7 109 46.8
Oeu061326.1 Olea europaea HOM05D006017 ORTHO05D007821 1.4e-15 86.3 44 88.6
Zm00001eb379510 Zea mays HOM05D006017 ORTHO05D007821 3.1e-15 85.1 109 40.4
AagrBONN_evm.TU.Sc2ySwM_228.2578 Anthoceros agrestis HOM05D006017 ORTHO05D007821 4.1e-15 84.7 105 41.9
Nitab4.5_0005445g0020 Nicotiana tabacum HOM05D006017 ORTHO05D007821 4.1e-15 84.7 101 46.5
Mapoly0078s0002 Marchantia polymorpha HOM05D006017 ORTHO05D007821 7.0e-15 84.0 106 44.3
Os06g0103300 Oryza sativa ssp. japonica HOM05D006017 ORTHO05D007821 1.2e-14 83.2 112 39.3
HPP92_003902 Vanilla planifolia HOM05D006017 ORTHO05D007821 4.5e-14 81.3 105 41.0
TAR436G0001 Trochodendron aralioides HOM05D006017 ORTHO05D007821 1.7e-13 79.3 44 77.3
Pp3c16_940 Physcomitrium patens HOM05D006017 ORTHO05D007821 6.5e-13 77.4 106 43.4
PRCOL_00000185 Prasinoderma coloniale HOM05D006017 ORTHO05D007821 4.7e-11 71.2 107 39.3
Cre02.g091200 Chlamydomonas reinhardtii HOM05D006017 ORTHO05D007821 2.3e-10 68.9 105 37.1
SMO119G0176 Selaginella moellendorffii HOM05D006017 ORTHO05D007821 4.9e-08 61.2 105 35.2


User provided reference genes

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