Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031224 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 3.6e-39 164.5 85 100.0
CSS0032758 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 7.1e-35 150.2 78 98.7
CSS0008859 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 6.9e-30 133.7 76 88.2
Actinidia08765 Actinidia chinensis HOM05D005039 ORTHO05D006145 2.6e-29 131.7 74 90.5
Actinidia24520 Actinidia chinensis HOM05D005039 ORTHO05D006145 2.6e-29 131.7 74 90.5
Rhsim03G0224300 Rhododendron simsii HOM05D005039 ORTHO05D006145 2.6e-29 131.7 72 91.7
arahy.Tifrunner.gnm1.ann1.GG16T8 Arachis hypogaea HOM05D005039 ORTHO05D006145 4.5e-29 131.0 74 89.2
arahy.Tifrunner.gnm1.ann1.IZT0PT Arachis hypogaea HOM05D005039 ORTHO05D006145 4.5e-29 131.0 74 89.2
GSVIVG01024328001 Vitis vinifera HOM05D005039 ORTHO05D006145 7.6e-29 130.2 74 87.8
Oeu027894.4 Olea europaea HOM05D005039 ORTHO05D006145 9.9e-29 129.8 74 85.1
SalBow7G2894 Salvia bowleyana HOM05D005039 ORTHO05D006145 1.7e-28 129.0 74 85.1
Dinv29126 Davidia involucrata HOM05D005039 ORTHO05D006145 2.2e-28 128.6 74 86.5
Lsat_1_v5_gn_9_47921 Lactuca sativa HOM05D005039 ORTHO05D006145 3.8e-28 127.9 74 86.5
MSTRG.24939 Avicennia marina HOM05D005039 ORTHO05D006145 4.9e-28 127.5 74 83.8
Duzib128G1855 Durio zibethinus HOM05D005039 ORTHO05D006145 1.1e-27 126.3 74 82.4
HanXRQChr16g0512151 Helianthus annuus HOM05D005039 ORTHO05D006145 1.1e-27 126.3 74 86.5
Nn3g19238 Nelumbo nucifera HOM05D005039 ORTHO05D006145 1.1e-27 126.3 74 85.1
Lalb_Chr09g0320081 Lupinus albus HOM05D005039 ORTHO05D006145 1.4e-27 125.9 74 82.4
SGA_v2.0_scaffold188G40301 Striga asiatica HOM05D005039 ORTHO05D006145 1.4e-27 125.9 74 83.8
TWI79G0887 Tripterygium wilfordii HOM05D005039 ORTHO05D006145 1.4e-27 125.9 74 85.1
Migut.C00159 Erythranthe guttata HOM05D005039 ORTHO05D006145 1.9e-27 125.6 74 83.8
PSO063G4466 Papaver somniferum HOM05D005039 ORTHO05D006145 2.4e-27 125.2 74 82.4
PSO782G0889 Papaver somniferum HOM05D005039 ORTHO05D006145 2.4e-27 125.2 74 82.4
TAR629G1612 Trochodendron aralioides HOM05D005039 ORTHO05D006145 2.4e-27 125.2 77 81.8
vmacro06372 Vaccinium macrocarpon HOM05D005039 ORTHO05D006145 2.4e-27 125.2 74 85.1
Duzib106G2059 Durio zibethinus HOM05D005039 ORTHO05D006145 3.2e-27 124.8 74 81.1
Peaxi162Scf00802g00029 Petunia axillaris HOM05D005039 ORTHO05D006145 3.2e-27 124.8 72 84.7
Ciclev10031435m.g Citrus clementina HOM05D005039 ORTHO05D006145 4.2e-27 124.4 74 85.1
Cc02_g00100 Coffea canephora HOM05D005039 ORTHO05D006145 4.2e-27 124.4 74 83.8
MBI04_g12218_MAGBIO Magnolia biondii HOM05D005039 ORTHO05D006145 4.2e-27 124.4 74 79.7
Gohir.A02G125900 Gossypium hirsutum HOM05D005039 ORTHO05D006145 5.5e-27 124.0 74 82.4
Gohir.D03G054700 Gossypium hirsutum HOM05D005039 ORTHO05D006145 5.5e-27 124.0 74 82.4
Gorai.003G057600 Gossypium raimondii HOM05D005039 ORTHO05D006145 5.5e-27 124.0 74 82.4
Solyc07g045330.3 Solanum lycopersicum HOM05D005039 ORTHO05D006145 5.5e-27 124.0 74 82.4
Sopen07g023860 Solanum pennellii HOM05D005039 ORTHO05D006145 5.5e-27 124.0 74 82.4
Aqoxy1G03063 Aquilegia oxysepala HOM05D005039 ORTHO05D006145 7.1e-27 123.6 76 80.3
Nitab4.5_0006992g0040 Nicotiana tabacum HOM05D005039 ORTHO05D006145 7.1e-27 123.6 73 83.6
CANSAT21G2526 Cannabis sativa HOM05D005039 ORTHO05D006145 9.3e-27 123.2 74 83.8
CAN.G437.12 Capsicum annuum HOM05D005039 ORTHO05D006145 9.3e-27 123.2 74 82.4
AUR62002093 Chenopodium quinoa HOM05D005039 ORTHO05D006145 9.3e-27 123.2 74 82.4
AUR62028211 Chenopodium quinoa HOM05D005039 ORTHO05D006145 9.3e-27 123.2 74 82.4
Glyma.11G109900 Glycine max HOM05D005039 ORTHO05D006145 9.3e-27 123.2 74 83.8
Atru.chr12.1876 Acer truncatum HOM05D005039 ORTHO05D006145 1.2e-26 122.9 74 83.8
COL.COLO4_15138 Corchorus olitorius HOM05D005039 ORTHO05D006145 1.2e-26 122.9 72 81.9
Glyma.12G014800 Glycine max HOM05D005039 ORTHO05D006145 1.2e-26 122.9 74 82.4
Phvul.011G017800 Phaseolus vulgaris HOM05D005039 ORTHO05D006145 1.2e-26 122.9 74 83.8
Thecc.05G222600 Theobroma cacao HOM05D005039 ORTHO05D006145 1.2e-26 122.9 74 79.7
CsaV3_2G014060 Cucumis sativus L. HOM05D005039 ORTHO05D006145 1.6e-26 122.5 74 82.4
Nitab4.5_0009864g0010 Nicotiana tabacum HOM05D005039 ORTHO05D006145 1.6e-26 122.5 74 81.1
PGSC0003DMG402017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 1.6e-26 122.5 74 81.1
Potri.013G077700 Populus trichocarpa HOM05D005039 ORTHO05D006145 2.1e-26 122.1 75 84.0
Hund09811 Selenicereus undatus HOM05D005039 ORTHO05D006145 2.1e-26 122.1 74 82.4
unitig_0.g2070 Utricularia gibba HOM05D005039 ORTHO05D006145 2.1e-26 122.1 74 81.1
VMungo1127G0275 Vigna mungo HOM05D005039 ORTHO05D006145 2.1e-26 122.1 74 82.4
Cfa016075 Carpinus fangiana HOM05D005039 ORTHO05D006145 2.7e-26 121.7 74 82.4
THA.LOC104805716 Tarenaya hassleriana HOM05D005039 ORTHO05D006145 2.7e-26 121.7 74 79.7
CDE11G0023 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 3.5e-26 121.3 74 78.4
MELO3C021899.2 Cucumis melo HOM05D005039 ORTHO05D006145 3.5e-26 121.3 74 81.1
Sabra13G0066500 Salix brachista HOM05D005039 ORTHO05D006145 3.5e-26 121.3 75 84.0
EL10Ac3g05043 Beta vulgaris HOM05D005039 ORTHO05D006145 4.6e-26 120.9 74 81.1
CiPaw.05G212800 Carya illinoinensis HOM05D005039 ORTHO05D006145 4.6e-26 120.9 72 84.7
BcaB05g25317 Brassica carinata HOM05D005039 ORTHO05D006145 6.0e-26 120.6 74 79.7
Haze_00371 Corylus avellana HOM05D005039 ORTHO05D006145 6.0e-26 120.6 72 83.3
Medtr5g005440 Medicago truncatula HOM05D005039 ORTHO05D006145 6.0e-26 120.6 74 81.1
Nn1g02122 Nelumbo nucifera HOM05D005039 ORTHO05D006145 6.0e-26 120.6 74 81.1
Ah.13g072370 Amaranthus hybridus HOM05D005039 ORTHO05D006145 7.9e-26 120.2 74 82.4
MD01G1239200 Malus domestica HOM05D005039 ORTHO05D006145 7.9e-26 120.2 74 82.4
MD07G1310900 Malus domestica HOM05D005039 ORTHO05D006145 7.9e-26 120.2 74 82.4
PGR142G1194 Punica granatum HOM05D005039 ORTHO05D006145 7.9e-26 120.2 76 77.6
Sp5g19320 Schrenkiella parvula HOM05D005039 ORTHO05D006145 7.9e-26 120.2 74 79.7
A02p12960 Brassica napus HOM05D005039 ORTHO05D006145 1.0e-25 119.8 74 79.7
C02p21070 Brassica napus HOM05D005039 ORTHO05D006145 1.0e-25 119.8 74 79.7
BolC2t08248H Brassica oleracea HOM05D005039 ORTHO05D006145 1.0e-25 119.8 74 79.7
BraA02t06350Z Brassica rapa HOM05D005039 ORTHO05D006145 1.0e-25 119.8 74 79.7
Carub.0002s1015 Capsella rubella HOM05D005039 ORTHO05D006145 1.0e-25 119.8 74 81.1
Ca_26497_v3 Cicer arietinum L. HOM05D005039 ORTHO05D006145 1.0e-25 119.8 74 79.7
Lj3g0003232 Lotus japonicus HOM05D005039 ORTHO05D006145 1.0e-25 119.8 74 79.7
ATR0829G179 Amborella trichopoda HOM05D005039 ORTHO05D006145 1.8e-25 119.0 74 81.1
HPP92_014410 Vanilla planifolia HOM05D005039 ORTHO05D006145 1.8e-25 119.0 74 79.7
Cpa.g.sc43.136 Carica papaya HOM05D005039 ORTHO05D006145 2.3e-25 118.6 72 80.6
Sed0001134 Sechium edule HOM05D005039 ORTHO05D006145 2.3e-25 118.6 74 81.1
AT1G64990 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 3.0e-25 118.2 74 79.7
ClCG09G017320 Citrullus lanatus HOM05D005039 ORTHO05D006145 3.0e-25 118.2 72 81.9
QL09p020758 Quercus lobata HOM05D005039 ORTHO05D006145 3.0e-25 118.2 74 78.4
Sc13g0011000 Simmondsia chinensis HOM05D005039 ORTHO05D006145 3.0e-25 118.2 74 79.7
Aa31LG2G2190 Aethionema arabicum HOM05D005039 ORTHO05D006145 3.9e-25 117.9 74 78.4
AL2G19600 Arabidopsis lyrata HOM05D005039 ORTHO05D006145 5.1e-25 117.5 74 79.7
FAN10G2688 Fragaria x ananassa HOM05D005039 ORTHO05D006145 5.1e-25 117.5 74 79.7
RcHm_v2.0_Chr1g0384591 Rosa chinensis HOM05D005039 ORTHO05D006145 5.1e-25 117.5 74 81.1
SEGI_13634 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 5.1e-25 117.5 74 77.0
Manes.08G160900 Manihot esculenta HOM05D005039 ORTHO05D006145 6.7e-25 117.1 74 81.1
CARHR056390 Cardamine hirsuta HOM05D005039 ORTHO05D006145 8.7e-25 116.7 74 78.4
AT4G27630 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 1.1e-24 116.3 76 78.9
CARHR235330 Cardamine hirsuta HOM05D005039 ORTHO05D006145 1.1e-24 116.3 76 78.9
FvH4_7g34230 Fragaria vesca HOM05D005039 ORTHO05D006145 1.1e-24 116.3 74 79.7
FAN01G1789 Fragaria x ananassa HOM05D005039 ORTHO05D006145 1.1e-24 116.3 74 79.7
Carub.0007s1322 Capsella rubella HOM05D005039 ORTHO05D006145 2.5e-24 115.2 74 78.4
BcaC09g50566 Brassica carinata HOM05D005039 ORTHO05D006145 3.3e-24 114.8 74 77.0
A01p18920 Brassica napus HOM05D005039 ORTHO05D006145 3.3e-24 114.8 74 77.0
C01p23870 Brassica napus HOM05D005039 ORTHO05D006145 3.3e-24 114.8 74 77.0
BolC1t02332H Brassica oleracea HOM05D005039 ORTHO05D006145 3.3e-24 114.8 74 77.0
BraA01t01833Z Brassica rapa HOM05D005039 ORTHO05D006145 3.3e-24 114.8 74 77.0
Sp7g25580 Schrenkiella parvula HOM05D005039 ORTHO05D006145 4.3e-24 114.4 74 78.4
Thhalv10025115m.g Eutrema salsugineum HOM05D005039 ORTHO05D006145 5.6e-24 114.0 74 77.0
FAN03G0337 Fragaria x ananassa HOM05D005039 ORTHO05D006145 1.3e-23 112.8 76 77.6
Zm00001eb430290 Zea mays HOM05D005039 ORTHO05D006145 1.6e-23 112.5 74 73.0
Os04g0600800 Oryza sativa ssp. japonica HOM05D005039 ORTHO05D006145 3.7e-23 111.3 74 74.3
SHI14975 Sapria himalayana HOM05D000023 ORTHO05D000014 3.7e-23 111.3 71 80.3
BcaNung01651 Brassica carinata HOM05D005039 ORTHO05D006145 4.8e-23 110.9 74 74.3
ECA232G0266 Erigeron canadensis HOM05D005039 ORTHO05D006145 5.3e-22 107.5 68 79.4
Mapoly0094s0006 Marchantia polymorpha HOM05D005039 ORTHO05D006145 3.8e-20 101.3 74 68.9
SMO304G0068 Selaginella moellendorffii HOM05D005039 ORTHO05D006145 2.1e-18 95.5 66 68.2
AagrBONN_evm.TU.Sc2ySwM_117.727 Anthoceros agrestis HOM05D005039 ORTHO05D006145 6.0e-18 94.0 74 63.5
Eucgr.K00067 Eucalyptus grandis HOM05D005039 ORTHO05D006145 1.0e-12 76.6 54 75.9
CBR_g72647 Chara braunii HOM05D005039 ORTHO05D006145 4.2e-11 71.2 72 50.0
Cre16.g674739 Chlamydomonas reinhardtii HOM05D005039 ORTHO05D006145 3.1e-06 55.1 63 42.9
CARHR057320 Cardamine hirsuta HOM05D005039 ORTHO05D006145 6.9e-06 53.9 36 77.8


User provided reference genes

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