Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031213 Camellia sinensis var. sinensis HOM05D007827 ORTHO05D009749 1.2e-124 449.9 235 100.0
CSS0026056 Camellia sinensis var. sinensis HOM05D007827 ORTHO05D009749 3.7e-73 278.9 229 68.6
CSS0037057 Camellia sinensis var. sinensis HOM05D007827 ORTHO05D009749 1.5e-63 246.9 221 66.5
Rhsim11G0042400 Rhododendron simsii HOM05D007827 ORTHO05D009749 1.7e-57 226.9 234 57.3
Actinidia01227 Actinidia chinensis HOM05D007827 ORTHO05D009749 1.8e-56 223.4 226 60.2
Hma1.2p1_0801F.1_g220250 Hydrangea macrophylla HOM05D007827 ORTHO05D009749 4.1e-48 195.7 240 52.1
CSS0004361 Camellia sinensis var. sinensis HOM05D007827 ORTHO05D009749 3.6e-44 182.6 243 49.0
Cc08_g10870 Coffea canephora HOM05D007827 ORTHO05D009749 1.1e-40 171.0 256 46.9
Dinv28003 Davidia involucrata HOM05D007827 ORTHO05D009749 1.1e-37 161.0 238 45.8
Hma1.2p1_1933F.1_g308040 Hydrangea macrophylla HOM05D007827 ORTHO05D009749 9.4e-37 157.9 240 46.2
Peaxi162Scf00297g00062 Petunia axillaris HOM05D007827 ORTHO05D009749 2.0e-34 150.2 250 43.2
Nitab4.5_0007037g0010 Nicotiana tabacum HOM05D007827 ORTHO05D009749 3.4e-34 149.4 253 43.5
Nitab4.5_0002039g0090 Nicotiana tabacum HOM05D007827 ORTHO05D009749 7.5e-34 148.3 252 42.5
CiPaw.16G027300 Carya illinoinensis HOM05D007827 ORTHO05D009749 1.6e-28 130.6 232 36.6
Solyc06g011440.1 Solanum lycopersicum HOM05D007827 ORTHO05D009749 2.7e-28 129.8 243 43.6
Sopen06g006480 Solanum pennellii HOM05D007827 ORTHO05D009749 3.6e-28 129.4 243 43.6
QL02p000760 Quercus lobata HOM05D007827 ORTHO05D009749 1.5e-26 124.0 228 39.5
Oeu018628.1 Olea europaea HOM05D007827 ORTHO05D009749 3.4e-26 122.9 231 42.0
Haze_18158 Corylus avellana HOM05D007827 ORTHO05D009749 7.5e-26 121.7 225 36.4
CAN.G130.10 Capsicum annuum HOM05D007827 ORTHO05D009749 4.9e-25 119.0 245 41.2
Nitab4.5_0007177g0010 Nicotiana tabacum HOM05D007827 ORTHO05D009749 2.4e-24 116.7 252 38.1
Nitab4.5_0000972g0020 Nicotiana tabacum HOM05D007827 ORTHO05D009749 7.0e-24 115.2 252 38.1
ClCG08G010040 Citrullus lanatus HOM05D007827 ORTHO05D009749 1.6e-23 114.0 235 36.2
PGSC0003DMG400008199 Solanum tuberosum HOM05D007827 ORTHO05D009749 3.5e-23 112.8 253 39.1
Aqoxy7G01166 Aquilegia oxysepala HOM05D007827 ORTHO05D009749 4.5e-23 112.5 230 34.3
Solyc08g062840.1 Solanum lycopersicum HOM05D007827 ORTHO05D009749 1.3e-22 110.9 252 38.5
Peaxi162Scf01001g00001 Petunia axillaris HOM05D007827 ORTHO05D009749 1.1e-21 107.8 247 39.3
MELO3C011460.2 Cucumis melo HOM05D007827 ORTHO05D009749 2.5e-21 106.7 237 35.0
DCAR_003136 Daucus carota HOM05D007827 ORTHO05D009749 2.5e-21 106.7 224 38.8
PGSC0003DMG400029878 Solanum tuberosum HOM05D007827 ORTHO05D009749 1.6e-20 104.0 243 38.3
Cpa.g.sc7.157 Carica papaya HOM05D007827 ORTHO05D009749 2.8e-20 103.2 245 38.0
Sopen08g018370 Solanum pennellii HOM05D007827 ORTHO05D009749 4.7e-20 102.4 231 39.8
CsaV3_6G032200 Cucumis sativus L. HOM05D007827 ORTHO05D009749 8.0e-20 101.7 235 32.8
MD15G1056900 Malus domestica HOM05D007827 ORTHO05D009749 8.0e-20 101.7 234 33.8
Sabra06G0174900 Salix brachista HOM05D007827 ORTHO05D009749 3.0e-19 99.8 219 36.1
Lalb_Chr23g0267841 Lupinus albus HOM05D007827 ORTHO05D009749 4.0e-19 99.4 240 35.0
Sed0014394 Sechium edule HOM05D007827 ORTHO05D009749 5.2e-19 99.0 232 33.2
TAR626G1076 Trochodendron aralioides HOM05D007827 ORTHO05D009749 1.2e-18 97.8 225 32.9
Prupe.1G409500 Prunus persica HOM05D007827 ORTHO05D009749 1.3e-17 94.4 239 32.2
SalBow4G1896 Salvia bowleyana HOM05D007827 ORTHO05D009749 2.2e-17 93.6 131 45.8
Oeu047101.1 Olea europaea HOM05D007827 ORTHO05D009749 3.7e-17 92.8 62 72.6
MBI04_g36906_MAGBIO Magnolia biondii HOM05D007827 ORTHO05D009749 1.1e-16 91.3 249 32.9
Migut.A00115 Erythranthe guttata HOM05D007827 ORTHO05D009749 1.8e-16 90.5 73 65.8
Lj1g0018619 Lotus japonicus HOM05D007827 ORTHO05D009749 2.4e-16 90.1 235 32.3
Medtr3g104620 Medicago truncatula HOM05D007827 ORTHO05D009749 3.2e-16 89.7 237 31.2
FvH4_2g31620 Fragaria vesca HOM05D007827 ORTHO05D009749 5.4e-16 89.0 272 33.1
RcHm_v2.0_Chr6g0311201 Rosa chinensis HOM05D007827 ORTHO05D009749 7.0e-16 88.6 275 32.4
Lsat_1_v5_gn_6_13921 Lactuca sativa HOM05D007827 ORTHO05D009749 9.2e-16 88.2 241 36.1
FAN24G3029 Fragaria x ananassa HOM05D007827 ORTHO05D009749 3.5e-15 86.3 265 32.8
Ciclev10010468m.g Citrus clementina HOM05D007827 ORTHO05D009749 5.9e-15 85.5 199 36.2
Thecc.09G056900 Theobroma cacao HOM05D007827 ORTHO05D009749 5.9e-15 85.5 236 30.1
Manes.16G082000 Manihot esculenta HOM05D007827 ORTHO05D009749 3.9e-14 82.8 212 32.5
Potri.006G226200 Populus trichocarpa HOM05D007827 ORTHO05D009749 5.0e-14 82.4 223 34.1
Lj5g0025960 Lotus japonicus HOM05D007827 ORTHO05D009749 1.9e-13 80.5 237 28.7
HPP92_007654 Vanilla planifolia HOM05D007827 ORTHO05D009749 1.9e-13 80.5 67 56.7
FAN15G3566 Fragaria x ananassa HOM05D007827 ORTHO05D009749 2.5e-13 80.1 266 32.7
Psat5g036160 Pisum sativum HOM05D007827 ORTHO05D009749 2.5e-13 80.1 241 30.3
ATR0789G035 Amborella trichopoda HOM05D007827 ORTHO05D009749 3.3e-13 79.7 57 63.2
SGA_v2.0_scaffold20G09207 Striga asiatica HOM05D007827 ORTHO05D009749 3.3e-13 79.7 140 42.9
Medtr1g015840 Medicago truncatula HOM05D007827 ORTHO05D009749 4.3e-13 79.3 231 27.7
Sed0025262 Sechium edule HOM05D007827 ORTHO05D009749 5.6e-13 79.0 228 31.6
Phvul.009G078700 Phaseolus vulgaris HOM05D007827 ORTHO05D009749 1.2e-12 77.8 250 32.4
Glyma.04G052400 Glycine max HOM05D007827 ORTHO05D009749 2.1e-12 77.0 126 34.1
Atru.chr7.1942 Acer truncatum HOM05D007827 ORTHO05D009749 3.6e-12 76.3 84 51.2
THA.LOC104799160 Tarenaya hassleriana HOM05D007827 ORTHO05D009749 2.3e-11 73.6 206 34.0
unitig_37.g12945 Utricularia gibba HOM05D007827 ORTHO05D009749 1.2e-10 71.2 60 55.0
TPR.G3528 Trifolium pratense HOM05D007827 ORTHO05D009749 2.0e-10 70.5 283 27.6
Gorai.009G043700 Gossypium raimondii HOM05D007827 ORTHO05D009749 3.4e-10 69.7 196 30.6
ECA240G3049 Erigeron canadensis HOM05D007827 ORTHO05D009749 5.8e-10 68.9 242 31.0
Phvul.001G037300 Phaseolus vulgaris HOM05D007827 ORTHO05D009749 7.5e-10 68.6 254 29.5
HPP92_009146 Vanilla planifolia HOM05D007827 ORTHO05D009749 7.5e-10 68.6 233 30.0
Glyma.14G097100 Glycine max HOM05D007827 ORTHO05D009749 2.9e-09 66.6 270 26.7
Psat6g021400 Pisum sativum HOM05D007827 ORTHO05D009749 2.9e-09 66.6 236 28.8
VMungo1309G0458 Vigna mungo HOM05D007827 ORTHO05D009749 3.7e-09 66.2 234 31.6
SGA_v2.0_scaffold169G38700 Striga asiatica HOM05D007827 ORTHO05D009749 8.3e-09 65.1 46 60.9
arahy.Tifrunner.gnm1.ann1.WVJ8VS Arachis hypogaea HOM05D007827 ORTHO05D009749 1.4e-08 64.3 222 29.3
Gohir.D05G042650 Gossypium hirsutum HOM05D007827 ORTHO05D009749 1.4e-08 64.3 196 29.1
arahy.Tifrunner.gnm1.ann1.S72ULK Arachis hypogaea HOM05D007827 ORTHO05D009749 2.4e-08 63.5 224 29.5
COL.COLO4_08756 Corchorus olitorius HOM05D030950 ORTHO05D009749 4.1e-08 62.8 236 28.4
Sp2g21610 Schrenkiella parvula HOM05D002043 ORTHO05D009749 4.1e-08 62.8 128 39.1
FAN27G2967 Fragaria x ananassa HOM05D007827 ORTHO05D009749 1.6e-07 60.8 135 36.3
Gohir.A05G040950 Gossypium hirsutum HOM05D007827 ORTHO05D009749 6.0e-07 58.9 52 50.0
TPR.G13014 Trifolium pratense HOM05D007827 ORTHO05D009749 2.3e-06 57.0 226 26.5
AL6G38110 Arabidopsis lyrata HOM05D002043 ORTHO05D002207 5.0e-06 55.8 132 34.8


User provided reference genes

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