Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031211 Camellia sinensis var. sinensis HOM05D004951 ORTHO05D005840 7.6e-127 457.2 236 100.0
Dinv39502 Davidia involucrata HOM05D004951 ORTHO05D005840 2.1e-97 359.4 237 78.1
Actinidia37925 Actinidia chinensis HOM05D004951 ORTHO05D005840 1.5e-95 353.2 236 77.1
Actinidia15407 Actinidia chinensis HOM05D004951 ORTHO05D005840 6.5e-94 347.8 227 80.6
Hma1.2p1_0638F.1_g193670 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 1.9e-90 336.3 238 73.9
GSVIVG01009867001 Vitis vinifera HOM05D004951 ORTHO05D005840 3.7e-89 332.0 236 73.3
Rhsim06G0023300 Rhododendron simsii HOM05D004951 ORTHO05D005840 4.8e-89 331.6 236 74.2
vmacro21713 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 5.8e-87 324.7 211 78.2
vmacro14381 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 1.7e-86 323.2 212 77.4
TAR381G0914 Trochodendron aralioides HOM05D004951 ORTHO05D005840 2.1e-84 316.2 233 71.2
Atru.chr2.1521 Acer truncatum HOM05D004951 ORTHO05D005840 2.5e-82 309.3 234 69.7
Actinidia28598 Actinidia chinensis HOM05D004951 ORTHO05D005840 3.3e-82 308.9 230 71.7
Dinv31828 Davidia involucrata HOM05D004951 ORTHO05D005840 3.3e-82 308.9 201 78.1
QL02p011069 Quercus lobata HOM05D004951 ORTHO05D005840 9.7e-82 307.4 233 69.5
Cc10_g01890 Coffea canephora HOM05D004951 ORTHO05D005840 3.7e-81 305.4 230 65.2
Ciclev10002352m.g Citrus clementina HOM05D004951 ORTHO05D005840 1.8e-80 303.1 234 68.8
Cfa013928 Carpinus fangiana HOM05D004951 ORTHO05D005840 7.7e-79 297.7 236 67.4
CiPaw.08G064600 Carya illinoinensis HOM05D004951 ORTHO05D005840 2.2e-78 296.2 228 68.4
Nn5g29279 Nelumbo nucifera HOM05D004951 ORTHO05D005840 5.0e-78 295.0 227 64.8
Glyma.18G246500 Glycine max HOM05D004951 ORTHO05D005840 1.4e-75 287.0 236 64.8
Lsat_1_v5_gn_8_80440 Lactuca sativa HOM05D004951 ORTHO05D005840 2.3e-75 286.2 234 62.8
Oeu024529.1 Olea europaea HOM05D004951 ORTHO05D005840 2.3e-75 286.2 230 65.2
Ca_08030_v3 Cicer arietinum L. HOM05D004951 ORTHO05D005840 3.0e-75 285.8 236 65.3
PSO675G8856 Papaver somniferum HOM05D004951 ORTHO05D005840 5.1e-75 285.0 229 63.3
Psat6g222440 Pisum sativum HOM05D004951 ORTHO05D005840 8.8e-75 284.3 236 63.1
MSTRG.1208 Avicennia marina HOM05D004951 ORTHO05D005840 2.0e-74 283.1 230 62.2
Manes.05G149800 Manihot esculenta HOM05D004951 ORTHO05D005840 2.0e-74 283.1 233 66.1
Glyma.09G246500 Glycine max HOM05D004951 ORTHO05D005840 2.5e-74 282.7 236 64.0
Oeu056857.1 Olea europaea HOM05D004951 ORTHO05D005840 2.5e-74 282.7 192 74.0
Gohir.A09G014000 Gossypium hirsutum HOM05D004951 ORTHO05D005840 9.7e-74 280.8 233 63.9
Gohir.D02G097900 Gossypium hirsutum HOM05D004951 ORTHO05D005840 9.7e-74 280.8 233 63.9
MD10G1149500 Malus domestica HOM05D004951 ORTHO05D005840 9.7e-74 280.8 231 62.8
PGR031G1064 Punica granatum HOM05D004951 ORTHO05D005840 9.7e-74 280.8 203 72.4
Gorai.005G111600 Gossypium raimondii HOM05D004951 ORTHO05D005840 1.3e-73 280.4 233 63.9
THA.LOC104809415 Tarenaya hassleriana HOM05D004951 ORTHO05D005840 1.3e-73 280.4 197 67.5
Thecc.08G041400 Theobroma cacao HOM05D004951 ORTHO05D005840 1.7e-73 280.0 234 66.7
COL.COLO4_26170 Corchorus olitorius HOM05D004951 ORTHO05D005840 2.2e-73 279.6 234 63.7
Gohir.A07G207200 Gossypium hirsutum HOM05D004951 ORTHO05D005840 2.2e-73 279.6 233 63.5
PSO541G0679 Papaver somniferum HOM05D004951 ORTHO05D005840 2.2e-73 279.6 196 67.9
Cpa.g.sc26.26 Carica papaya HOM05D004951 ORTHO05D005840 4.8e-73 278.5 228 63.2
ClCG11G002570 Citrullus lanatus HOM05D004951 ORTHO05D005840 2.4e-72 276.2 228 61.0
COL.COLO4_20267 Corchorus olitorius HOM05D004951 ORTHO05D005840 4.1e-72 275.4 201 69.2
MD05G1155200 Malus domestica HOM05D004951 ORTHO05D005840 4.1e-72 275.4 236 60.6
CsaV3_3G045700 Cucumis sativus L. HOM05D004951 ORTHO05D005840 5.3e-72 275.0 228 62.3
Duzib116G0591 Durio zibethinus HOM05D004951 ORTHO05D005840 5.3e-72 275.0 233 63.9
PSO675G7262 Papaver somniferum HOM05D004951 ORTHO05D005840 2.6e-71 272.7 232 60.3
Eucgr.E00855 Eucalyptus grandis HOM05D004951 ORTHO05D005840 4.5e-71 271.9 236 63.6
PGR031G3408 Punica granatum HOM05D004951 ORTHO05D005840 7.7e-71 271.2 189 73.0
Lalb_Chr03g0040521 Lupinus albus HOM05D004951 ORTHO05D005840 1.7e-70 270.0 236 63.6
Phvul.008G050600 Phaseolus vulgaris HOM05D004951 ORTHO05D005840 1.7e-70 270.0 236 64.0
ECA236G4786 Erigeron canadensis HOM05D004951 ORTHO05D005840 2.2e-70 269.6 231 60.6
VMungo1383G3289 Vigna mungo HOM05D004951 ORTHO05D005840 2.2e-70 269.6 236 61.4
TAR625G0428 Trochodendron aralioides HOM05D004951 ORTHO05D005840 2.9e-70 269.2 199 69.3
Gohir.A07G207300 Gossypium hirsutum HOM05D004951 ORTHO05D005840 5.0e-70 268.5 197 68.5
HanXRQChr02g0039471 Helianthus annuus HOM05D004951 ORTHO05D005840 5.0e-70 268.5 231 60.6
CANSAT78G0251 Cannabis sativa HOM05D004951 ORTHO05D005840 6.5e-70 268.1 236 60.6
CAN.G103.3 Capsicum annuum HOM05D004951 ORTHO05D005840 8.5e-70 267.7 233 60.5
ClCG05G018480 Citrullus lanatus HOM05D004951 ORTHO05D005840 1.1e-69 267.3 192 67.2
Sed0001853 Sechium edule HOM05D004951 ORTHO05D005840 1.4e-69 266.9 231 60.2
TPR.G15148 Trifolium pratense HOM05D004951 ORTHO05D005840 2.5e-69 266.2 236 59.7
SGA_v2.0_scaffold11G05895 Striga asiatica HOM05D004951 ORTHO05D005840 5.5e-69 265.0 228 60.5
arahy.Tifrunner.gnm1.ann1.1I2LZG Arachis hypogaea HOM05D004951 ORTHO05D005840 9.4e-69 264.2 237 62.0
arahy.Tifrunner.gnm1.ann1.T7R5G6 Arachis hypogaea HOM05D004951 ORTHO05D005840 1.2e-68 263.8 237 61.6
HanXRQChr10g0300951 Helianthus annuus HOM05D004951 ORTHO05D005840 3.6e-68 262.3 200 65.0
Potri.005G236800 Populus trichocarpa HOM05D004951 ORTHO05D005840 4.7e-68 261.9 236 58.9
Sc02g0008460 Simmondsia chinensis HOM05D004951 ORTHO05D005840 4.7e-68 261.9 236 60.6
arahy.Tifrunner.gnm1.ann1.5C4441 Arachis hypogaea HOM05D004951 ORTHO05D005840 7.9e-68 261.2 237 60.8
Thhalv10019169m.g Eutrema salsugineum HOM05D004951 ORTHO05D005840 1.4e-67 260.4 194 62.9
Aa31LG4G5890 Aethionema arabicum HOM05D004951 ORTHO05D005840 1.8e-67 260.0 208 62.5
Sopen05g032630 Solanum pennellii HOM05D004951 ORTHO05D005840 3.0e-67 259.2 231 60.6
Solyc05g054140.3 Solanum lycopersicum HOM05D004951 ORTHO05D005840 5.1e-67 258.5 231 60.2
Sp5g30770 Schrenkiella parvula HOM05D004951 ORTHO05D005840 6.7e-67 258.1 194 61.3
Lj1g0015493 Lotus japonicus HOM05D004951 ORTHO05D005840 8.8e-67 257.7 236 57.2
Atru.chr13.322 Acer truncatum HOM05D004951 ORTHO05D005840 1.5e-66 256.9 201 67.2
CARHR069060 Cardamine hirsuta HOM05D004951 ORTHO05D005840 1.5e-66 256.9 194 61.9
Sabra05G0183100 Salix brachista HOM05D004951 ORTHO05D005840 1.5e-66 256.9 236 56.8
Eucgr.F02088 Eucalyptus grandis HOM05D004951 ORTHO05D005840 3.3e-66 255.8 236 60.6
Prupe.8G188100 Prunus persica HOM05D004951 ORTHO05D005840 5.7e-66 255.0 228 61.0
AL2G35650 Arabidopsis lyrata HOM05D004951 ORTHO05D005840 9.7e-66 254.2 194 61.3
BcaC03g15607 Brassica carinata HOM05D004951 ORTHO05D005840 9.7e-66 254.2 195 59.5
BolC2t09323H Brassica oleracea HOM05D004951 ORTHO05D005840 9.7e-66 254.2 195 59.5
EL10Ac1g02264 Beta vulgaris HOM05D004951 ORTHO05D005840 1.3e-65 253.8 237 59.9
SalBow8G2430 Salvia bowleyana HOM05D004951 ORTHO05D005840 1.3e-65 253.8 230 59.1
PGSC0003DMG400008458 Solanum tuberosum HOM05D004951 ORTHO05D005840 1.7e-65 253.4 231 59.7
Nitab4.5_0001242g0070 Nicotiana tabacum HOM05D004951 ORTHO05D005840 2.8e-65 252.7 231 57.1
Potri.002G024601 Populus trichocarpa HOM05D004951 ORTHO05D005840 3.7e-65 252.3 236 58.1
BraA02t07047Z Brassica rapa HOM05D004951 ORTHO05D005840 4.8e-65 251.9 195 59.0
TWI34G1799 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 4.8e-65 251.9 234 57.7
Peaxi162Scf00186g00023 Petunia axillaris HOM05D004951 ORTHO05D005840 6.3e-65 251.5 215 60.9
Carub.0002s2250 Capsella rubella HOM05D004951 ORTHO05D005840 1.1e-64 250.8 196 61.2
C02p33810 Brassica napus HOM05D004951 ORTHO05D005840 1.8e-64 250.0 188 60.1
A02p20120 Brassica napus HOM05D004951 ORTHO05D005840 3.1e-64 249.2 188 60.1
Nn1g08637 Nelumbo nucifera HOM05D004951 ORTHO05D005840 4.1e-64 248.8 236 56.8
AT1G75670 Arabidopsis thaliana HOM05D004951 ORTHO05D005840 9.1e-64 247.7 194 59.8
Migut.G00984 Erythranthe guttata HOM05D004951 ORTHO05D005840 9.1e-64 247.7 198 62.1
TWI56G1488 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 1.2e-63 247.3 234 57.3
Haze_22610 Corylus avellana HOM05D004951 ORTHO05D005840 1.5e-63 246.9 258 57.8
Medtr7g080860 Medicago truncatula HOM05D004951 ORTHO05D005840 1.3e-62 243.8 240 57.5
Migut.C00815 Erythranthe guttata HOM05D004951 ORTHO05D005840 2.9e-62 242.7 198 61.6
Nitab4.5_0014171g0010 Nicotiana tabacum HOM05D004951 ORTHO05D005840 3.8e-62 242.3 260 51.5
Aqoxy3G00621 Aquilegia oxysepala HOM05D004951 ORTHO05D005840 5.0e-62 241.9 247 55.9
RcHm_v2.0_Chr6g0282531 Rosa chinensis HOM05D004951 ORTHO05D005840 7.2e-61 238.0 243 53.5
BcaC08g47055 Brassica carinata HOM05D004951 ORTHO05D005840 3.6e-60 235.7 196 56.6
Ah.02g126690 Amaranthus hybridus HOM05D004951 ORTHO05D005840 6.1e-60 235.0 199 61.3
HPP92_017328 Vanilla planifolia HOM05D004951 ORTHO05D005840 8.0e-60 234.6 205 58.0
AUR62035728 Chenopodium quinoa HOM05D004951 ORTHO05D005840 1.5e-58 230.3 231 55.4
FAN24G1417 Fragaria x ananassa HOM05D004951 ORTHO05D005840 4.4e-58 228.8 245 53.5
AUR62035440 Chenopodium quinoa HOM05D004951 ORTHO05D005840 1.7e-57 226.9 231 55.0
FvH4_2g17590 Fragaria vesca HOM05D004951 ORTHO05D005840 1.7e-57 226.9 245 53.1
FAN15G2157 Fragaria x ananassa HOM05D004951 ORTHO05D005840 1.7e-57 226.9 245 53.1
Sed0010580 Sechium edule HOM05D004951 ORTHO05D005840 1.7e-57 226.9 223 52.9
FAN27G0910 Fragaria x ananassa HOM05D004951 ORTHO05D005840 4.5e-55 218.8 263 49.4
FAN15G3167 Fragaria x ananassa HOM05D004951 ORTHO05D005840 3.2e-53 212.6 187 59.4
CDE12G0586 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 4.2e-53 212.2 180 58.3
Oeu024522.1 Olea europaea HOM05D004951 ORTHO05D005840 2.1e-52 209.9 198 61.6
Lalb_Chr01g0021631 Lupinus albus HOM05D004951 ORTHO05D005840 6.1e-52 208.4 194 59.8
CDE05G3598 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 8.0e-52 208.0 180 57.2
DCAR_008455 Daucus carota HOM05D004951 ORTHO05D005840 1.8e-51 206.8 161 63.4
BcaB05g24929 Brassica carinata HOM05D000120 ORTHO05D000068 1.2e-50 204.1 159 60.4
Lj4A795G31 Lonicera japonica HOM05D004951 ORTHO05D005840 1.2e-50 204.1 124 80.6
Gohir.A02G093500 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.4e-48 197.2 142 69.0
MBI05_g38365_MAGBIO Magnolia biondii HOM05D004951 ORTHO05D005840 4.1e-48 195.7 315 42.5
unitig_8.g4914 Utricularia gibba HOM05D004951 ORTHO05D005840 2.7e-47 193.0 196 51.0
ATR0068G029 Amborella trichopoda HOM05D004951 ORTHO05D005840 1.0e-43 181.0 240 47.1
Os12g0533600 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 5.7e-42 175.3 230 44.3
CAN.G230.10 Capsicum annuum HOM05D004951 ORTHO05D005840 7.5e-42 174.9 134 64.9
SEGI_29847 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 5.6e-37 158.7 246 41.5
Zm00001eb410680 Zea mays HOM05D004951 ORTHO05D005840 9.5e-37 157.9 253 37.5
Os06g0168400 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 1.2e-34 151.0 154 50.6
Mapoly0115s0026 Marchantia polymorpha HOM05D004951 ORTHO05D005840 6.4e-33 145.2 233 40.3
AagrBONN_evm.TU.Sc2ySwM_344.4244 Anthoceros agrestis HOM05D004951 ORTHO05D005840 7.8e-31 138.3 183 43.2
AagrBONN_evm.TU.Sc2ySwM_368.3390 Anthoceros agrestis HOM05D004951 ORTHO05D005840 1.7e-30 137.1 184 42.9
Pp3c15_23380 Physcomitrium patens HOM05D004951 ORTHO05D005840 3.0e-30 136.3 210 40.0
PGSC0003DMG400019052 Solanum tuberosum HOM05D004951 ORTHO05D005840 3.3e-29 132.9 116 57.8
SMO356G0424 Selaginella moellendorffii HOM05D004951 ORTHO05D005840 3.4e-26 122.9 178 39.9
Hma1.2p1_2299F.1_g319190 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 3.2e-24 116.3 76 76.3
Sed0021847 Sechium edule HOM05D004951 ORTHO05D005840 9.2e-24 114.8 143 45.5
ATR0585G020 Amborella trichopoda HOM05D004951 ORTHO05D005840 3.1e-19 99.8 88 55.7
SEGI_15858 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 1.1e-16 91.3 95 47.4
BolC6t40000H Brassica oleracea HOM05D004951 ORTHO05D005840 1.0e-14 84.7 72 55.6
Hma1.2p1_0386F.1_g141900 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 6.6e-14 82.0 77 57.1
Hma1.2p1_0312F.1_g121470 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 1.5e-13 80.9 77 55.8
Cre02.g086750 Chlamydomonas reinhardtii HOM05D004951 ORTHO05D005840 1.7e-09 67.4 182 28.0
CBR_g74690 Chara braunii HOM05D004951 ORTHO05D005840 2.2e-09 67.0 142 31.7
MCO12G415 Micromonas commoda HOM05D004951 ORTHO05D005840 4.9e-09 65.9 165 30.3
MELO3C003766.2 Cucumis melo HOM05D004951 ORTHO05D005840 2.1e-07 60.5 51 62.7
GSVIVG01010657001 Vitis vinifera HOM05D002399 ORTHO05D005840 2.3e-06 57.0 36 75.0


User provided reference genes

Program Settings