Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031156 Camellia sinensis var. sinensis HOM05D010878 ORTHO05D009673 1.1e-89 333.2 161 100.0
CSS0022179 Camellia sinensis var. sinensis HOM05D010878 ORTHO05D009673 1.6e-64 249.6 182 72.5
CSS0014543 Camellia sinensis var. sinensis HOM05D000097 ORTHO05D009673 1.5e-62 243.0 177 72.3
Cc11_g05990 Coffea canephora HOM05D000097 ORTHO05D009673 4.2e-28 128.6 154 46.1
Cc11_g06180 Coffea canephora HOM05D000097 ORTHO05D009673 2.1e-27 126.3 156 44.2
CSS0048371 Camellia sinensis var. sinensis HOM05D010878 ORTHO05D009673 5.1e-26 121.7 161 40.4
Cc07_g18350 Coffea canephora HOM05D000097 ORTHO05D009673 5.1e-26 121.7 156 43.6
Actinidia38166 Actinidia chinensis HOM05D000097 ORTHO05D009673 1.4e-23 113.6 163 39.9
Rhsim10G0154500 Rhododendron simsii HOM05D010878 ORTHO05D009673 1.5e-22 110.2 167 41.9
RhsimUnG0219000 Rhododendron simsii HOM05D010878 ORTHO05D009673 7.7e-22 107.8 171 40.9
Actinidia26770 Actinidia chinensis HOM05D010878 ORTHO05D009673 8.5e-21 104.4 98 53.1
Rhsim04G0081700 Rhododendron simsii HOM05D000149 ORTHO05D009673 8.5e-21 104.4 168 40.5
TAR636G0647 Trochodendron aralioides HOM05D000097 ORTHO05D009673 8.5e-21 104.4 92 53.3
Actinidia38167 Actinidia chinensis HOM05D010878 ORTHO05D009673 1.4e-20 103.6 161 38.5
vmacro09222 Vaccinium macrocarpon HOM05D000097 ORTHO05D009673 1.2e-19 100.5 159 37.7
TAR636G0231 Trochodendron aralioides HOM05D000222 ORTHO05D009673 1.6e-19 100.1 102 50.0
Cc11_g06000 Coffea canephora HOM05D010878 ORTHO05D009673 2.1e-19 99.8 157 38.9
Rhsim06G0042700 Rhododendron simsii HOM05D010878 ORTHO05D009673 7.9e-19 97.8 167 37.7
CSS0026496 Camellia sinensis var. sinensis HOM05D000097 ORTHO05D009673 3.3e-17 92.4 101 48.5
Peaxi162Scf00312g00612 Petunia axillaris HOM05D000097 ORTHO05D009673 3.3e-17 92.4 110 43.6
CAN.G84.45 Capsicum annuum HOM05D010878 ORTHO05D009673 4.4e-17 92.0 165 38.2
Rhsim05G0188900 Rhododendron simsii HOM05D000097 ORTHO05D009673 5.7e-17 91.7 104 45.2
CAN.G799.9 Capsicum annuum HOM05D000264 ORTHO05D009673 2.8e-16 89.4 104 45.2
DCAR_001308 Daucus carota HOM05D000097 ORTHO05D009673 3.1e-15 85.9 124 37.9
TAR636G2268 Trochodendron aralioides HOM05D000097 ORTHO05D009673 4.1e-15 85.5 99 47.5
DCAR_001312 Daucus carota HOM05D000097 ORTHO05D009673 6.9e-15 84.7 156 34.0
TAR627G0755 Trochodendron aralioides HOM05D000097 ORTHO05D000041 1.5e-14 83.6 109 42.2
DCAR_006030 Daucus carota HOM05D000097 ORTHO05D009673 1.0e-13 80.9 178 31.5
TAR636G0150 Trochodendron aralioides HOM05D000097 ORTHO05D009673 1.7e-13 80.1 91 46.2
Rhsim06G0043800 Rhododendron simsii HOM05D000097 ORTHO05D009673 6.5e-13 78.2 194 32.5
Rhsim05G0189100 Rhododendron simsii HOM05D000097 ORTHO05D009673 1.4e-12 77.0 103 40.8
CSS0048318 Camellia sinensis var. sinensis HOM05D000097 ORTHO05D009673 3.2e-12 75.9 101 42.6
CSS0032671 Camellia sinensis var. sinensis HOM05D000097 ORTHO05D009673 5.5e-12 75.1 102 41.2
ATR0049G043 Amborella trichopoda HOM05D000097 ORTHO05D000041 1.2e-11 73.9 130 33.8
Dinv05551 Davidia involucrata HOM05D000097 ORTHO05D000041 6.1e-11 71.6 110 30.9
Solyc09g098050.2 Solanum lycopersicum HOM05D000097 ORTHO05D009673 1.4e-10 70.5 106 43.4
ATR0049G029 Amborella trichopoda HOM05D000097 ORTHO05D000041 1.8e-10 70.1 102 37.3
Dinv13779 Davidia involucrata HOM05D000097 ORTHO05D000041 2.3e-10 69.7 140 29.3
ATR0736G044 Amborella trichopoda HOM05D000097 ORTHO05D009673 3.0e-10 69.3 97 35.1
Rhsim06G0042400 Rhododendron simsii HOM05D010878 ORTHO05D009673 3.0e-10 69.3 167 30.5
Atru.chr1.1016 Acer truncatum HOM05D000097 ORTHO05D000041 3.9e-10 68.9 115 31.3
Peaxi162Scf00389g00031 Petunia axillaris HOM05D000097 ORTHO05D009673 5.2e-10 68.6 164 30.5
Prupe.1G160000 Prunus persica HOM05D000097 ORTHO05D000041 5.2e-10 68.6 91 37.4
Atru.chr1.985 Acer truncatum HOM05D000097 ORTHO05D000041 8.8e-10 67.8 112 31.2
Rhsim06G0042600 Rhododendron simsii HOM05D010878 ORTHO05D009673 8.8e-10 67.8 167 30.5
Haze_04656 Corylus avellana HOM05D000097 ORTHO05D000041 1.1e-09 67.4 94 37.2
Duzib268G1646 Durio zibethinus HOM05D000097 ORTHO05D000041 1.1e-09 67.4 106 36.8
Potri.011G019500 Populus trichocarpa HOM05D000097 ORTHO05D000041 1.1e-09 67.4 142 28.2
Ciclev10004436m.g Citrus clementina HOM05D000097 ORTHO05D000041 1.5e-09 67.0 91 37.4
QL05p070833 Quercus lobata HOM05D000097 ORTHO05D000041 1.5e-09 67.0 99 32.3
Sopen09g035970 Solanum pennellii HOM05D000097 ORTHO05D009673 2.0e-09 66.6 102 45.1
MD13G1283400 Malus domestica HOM05D000097 ORTHO05D000041 2.6e-09 66.2 87 40.2
QL05p070510 Quercus lobata HOM05D000097 ORTHO05D000041 4.4e-09 65.5 99 32.3
DCAR_001310 Daucus carota HOM05D002397 ORTHO05D009673 5.7e-09 65.1 71 45.1
QL05p070873 Quercus lobata HOM05D000097 ORTHO05D000041 5.7e-09 65.1 99 32.3
Cfa000149 Carpinus fangiana HOM05D000097 ORTHO05D000041 7.4e-09 64.7 95 38.9
COL.COLO4_10465 Corchorus olitorius HOM05D000264 ORTHO05D000152 7.4e-09 64.7 89 38.2
Haze_06879 Corylus avellana HOM05D000097 ORTHO05D000041 9.7e-09 64.3 113 33.6
MBI04_g26262_MAGBIO Magnolia biondii HOM05D000097 ORTHO05D000041 9.7e-09 64.3 88 37.5
QL05p070420 Quercus lobata HOM05D000097 ORTHO05D000041 9.7e-09 64.3 102 32.4
TWI12G0958 Tripterygium wilfordii HOM05D000097 ORTHO05D000041 9.7e-09 64.3 95 31.6
VMungo0540G1282 Vigna mungo HOM05D000097 ORTHO05D000041 9.7e-09 64.3 99 34.3
CiPaw.10G075200 Carya illinoinensis HOM05D000097 ORTHO05D000041 1.3e-08 63.9 96 34.4
Glyma.13G224800 Glycine max HOM05D000097 ORTHO05D000041 1.7e-08 63.5 103 34.0
Medtr2g020450 Medicago truncatula HOM05D000097 ORTHO05D000041 1.7e-08 63.5 92 32.6
Nitab4.5_0000888g0040 Nicotiana tabacum HOM05D000097 ORTHO05D009673 1.7e-08 63.5 153 32.0
PGR142G0658 Punica granatum HOM05D000097 ORTHO05D000041 1.7e-08 63.5 94 34.0
Dinv13808 Davidia involucrata HOM05D000097 ORTHO05D000041 2.2e-08 63.2 116 31.0
GSVIVG01001206001 Vitis vinifera HOM05D000097 ORTHO05D000041 2.2e-08 63.2 94 36.2
GSVIVG01001208001 Vitis vinifera HOM05D000097 ORTHO05D000041 2.2e-08 63.2 94 36.2
PSO832G1868 Papaver somniferum HOM05D000097 ORTHO05D000041 2.8e-08 62.8 105 33.3
Dinv07264 Davidia involucrata HOM05D000097 ORTHO05D000041 3.7e-08 62.4 97 35.1
Hma1.2p1_0172F.1_g075930 Hydrangea macrophylla HOM05D000097 ORTHO05D000041 3.7e-08 62.4 96 35.4
Potri.015G118600 Populus trichocarpa HOM05D000097 ORTHO05D000041 4.8e-08 62.0 121 31.4
MBI04_g27907_MAGBIO Magnolia biondii HOM05D000097 ORTHO05D000041 6.3e-08 61.6 92 35.9
QL05p070490 Quercus lobata HOM05D000097 ORTHO05D000041 6.3e-08 61.6 104 29.8
VMungo0540G0734 Vigna mungo HOM05D000097 ORTHO05D000041 6.3e-08 61.6 100 33.0
GSVIVG01003111001 Vitis vinifera HOM05D000097 ORTHO05D000041 6.3e-08 61.6 87 34.5
Cfa006187 Carpinus fangiana HOM05D000097 ORTHO05D000041 8.2e-08 61.2 95 35.8
Ciclev10006513m.g Citrus clementina HOM05D000097 ORTHO05D000041 8.2e-08 61.2 108 30.6
Haze_06867 Corylus avellana HOM05D000097 ORTHO05D000041 8.2e-08 61.2 106 29.2
PSO017G4480 Papaver somniferum HOM05D000097 ORTHO05D009673 8.2e-08 61.2 111 35.1
TAR362G0859 Trochodendron aralioides HOM05D000097 ORTHO05D000041 8.2e-08 61.2 96 32.3
ATR0049G019 Amborella trichopoda HOM05D000097 ORTHO05D000041 1.1e-07 60.8 143 26.6
Ciclev10007907m.g Citrus clementina HOM05D000097 ORTHO05D000041 1.1e-07 60.8 100 38.0
Ciclev10008038m.g Citrus clementina HOM05D000097 ORTHO05D000041 1.1e-07 60.8 100 38.0
Hma1.2p1_0172F.1_g075950 Hydrangea macrophylla HOM05D000097 ORTHO05D000041 1.1e-07 60.8 94 35.1
Lj1C53G9 Lonicera japonica HOM05D000097 ORTHO05D000041 1.1e-07 60.8 96 35.4
PSO675G3735 Papaver somniferum HOM05D000097 ORTHO05D009673 1.1e-07 60.8 111 35.1
Phvul.006G170700 Phaseolus vulgaris HOM05D000097 ORTHO05D000041 1.1e-07 60.8 99 32.3
GSVIVG01012268001 Vitis vinifera HOM05D000097 ORTHO05D000041 1.1e-07 60.8 95 35.8
Ciclev10004568m.g Citrus clementina HOM05D000097 ORTHO05D000041 1.4e-07 60.5 111 30.6
MBI04_g26286_MAGBIO Magnolia biondii HOM05D000097 ORTHO05D000041 1.4e-07 60.5 92 35.9
CiPaw.09G099200 Carya illinoinensis HOM05D000097 ORTHO05D000041 1.8e-07 60.1 97 30.9
PSO837G0048 Papaver somniferum HOM05D000097 ORTHO05D009673 1.8e-07 60.1 111 38.7
Cc03_g07820 Coffea canephora HOM05D000097 ORTHO05D000041 2.4e-07 59.7 96 33.3
Nitab4.5_0000533g0020 Nicotiana tabacum HOM05D000097 ORTHO05D009673 2.4e-07 59.7 150 30.7
PGSC0003DMG400023040 Solanum tuberosum HOM05D000097 ORTHO05D000041 2.4e-07 59.7 100 36.0
TPR.G1508 Trifolium pratense HOM05D000097 ORTHO05D000041 2.4e-07 59.7 95 32.6
Cfa000146 Carpinus fangiana HOM05D000097 ORTHO05D000041 3.1e-07 59.3 103 30.1
Haze_06873 Corylus avellana HOM05D000097 ORTHO05D000041 3.1e-07 59.3 122 29.5
Phvul.006G160200 Phaseolus vulgaris HOM05D000097 ORTHO05D000041 3.1e-07 59.3 90 33.3
GSVIVG01005660001 Vitis vinifera HOM05D000097 ORTHO05D000041 3.1e-07 59.3 95 36.8
CANSAT78G0315 Cannabis sativa HOM05D000264 ORTHO05D000152 4.1e-07 58.9 100 33.0
Cc00_g33890 Coffea canephora HOM05D000097 ORTHO05D000041 4.1e-07 58.9 102 32.4
TAR362G0086 Trochodendron aralioides HOM05D000097 ORTHO05D000041 4.1e-07 58.9 89 34.8
TAR633G0997 Trochodendron aralioides HOM05D000097 ORTHO05D000041 4.1e-07 58.9 118 31.4
Cfa000151 Carpinus fangiana HOM05D000097 ORTHO05D000041 5.3e-07 58.5 100 33.0
ClCG00G002910 Citrullus lanatus HOM05D000097 ORTHO05D000041 5.3e-07 58.5 88 31.8
ClCG07G000470 Citrullus lanatus HOM05D000097 ORTHO05D000041 5.3e-07 58.5 88 31.8
Dinv13783 Davidia involucrata HOM05D000097 ORTHO05D000041 5.3e-07 58.5 140 25.7
FAN21G1014 Fragaria x ananassa HOM05D000097 ORTHO05D000041 5.3e-07 58.5 111 32.4
MBI04_g26254_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000041 5.3e-07 58.5 87 35.6
Prupe.1G007500 Prunus persica HOM05D000097 ORTHO05D000041 5.3e-07 58.5 91 34.1
Prupe.4G203500 Prunus persica HOM05D000264 ORTHO05D000152 5.3e-07 58.5 94 36.2
Prupe.4G203600 Prunus persica HOM05D000264 ORTHO05D000152 5.3e-07 58.5 94 36.2
QL05p034733 Quercus lobata HOM05D000097 ORTHO05D000041 5.3e-07 58.5 102 35.3
QL05p071327 Quercus lobata HOM05D000097 ORTHO05D000041 5.3e-07 58.5 93 33.3
Psat1g186680 Pisum sativum HOM05D000097 ORTHO05D000041 7.0e-07 58.2 94 31.9
Prupe.4G202900 Prunus persica HOM05D000264 ORTHO05D000152 7.0e-07 58.2 94 36.2
Haze_04651 Corylus avellana HOM05D000097 ORTHO05D000041 9.1e-07 57.8 95 31.6
DCAR_001142 Daucus carota HOM05D000097 ORTHO05D000041 9.1e-07 57.8 97 35.1
Gohir.A10G124500 Gossypium hirsutum HOM05D000097 ORTHO05D000041 9.1e-07 57.8 104 32.7
Gohir.D10G141800 Gossypium hirsutum HOM05D000097 ORTHO05D000041 9.1e-07 57.8 99 33.3
Gorai.011G158100 Gossypium raimondii HOM05D000097 ORTHO05D000041 9.1e-07 57.8 99 33.3
PSO017G1497 Papaver somniferum HOM05D000097 ORTHO05D009673 9.1e-07 57.8 108 34.3
Prupe.4G203100 Prunus persica HOM05D000264 ORTHO05D000152 9.1e-07 57.8 93 35.5
Prupe.8G029900 Prunus persica HOM05D000097 ORTHO05D000041 9.1e-07 57.8 98 32.7
Atru.chr2.3228 Acer truncatum HOM05D000264 ORTHO05D000152 1.2e-06 57.4 102 31.4
Aqoxy1G02931 Aquilegia oxysepala HOM05D000097 ORTHO05D000041 1.2e-06 57.4 148 25.7
Dinv25266 Davidia involucrata HOM05D000097 ORTHO05D000041 1.2e-06 57.4 97 30.9
Glyma.02G268300 Glycine max HOM05D000097 ORTHO05D000041 1.2e-06 57.4 102 30.4
Prupe.8G235300 Prunus persica HOM05D000097 ORTHO05D000041 1.2e-06 57.4 103 30.1
PGR119G1822 Punica granatum HOM05D000097 ORTHO05D000041 1.2e-06 57.4 98 29.6
HPP92_023526 Vanilla planifolia HOM05D000097 ORTHO05D000041 1.2e-06 57.4 96 38.5
CiPaw.08G151200 Carya illinoinensis HOM05D000097 ORTHO05D000041 1.6e-06 57.0 93 30.1
Haze_06869 Corylus avellana HOM05D000097 ORTHO05D000041 1.6e-06 57.0 97 34.0
ECA247G1480 Erigeron canadensis HOM05D000097 ORTHO05D000041 1.6e-06 57.0 79 35.4
QL12p041856 Quercus lobata HOM05D000097 ORTHO05D000041 1.6e-06 57.0 98 32.7
RcHm_v2.0_Chr7g0213401 Rosa chinensis HOM05D000264 ORTHO05D000152 1.6e-06 57.0 91 31.9
CSS0033205 Camellia sinensis var. sinensis HOM05D000097 ORTHO05D000041 2.0e-06 56.6 66 37.9
FvH4_2g23030 Fragaria vesca HOM05D000097 ORTHO05D000041 2.0e-06 56.6 102 30.4
FAN24G3408 Fragaria x ananassa HOM05D000097 ORTHO05D000041 2.0e-06 56.6 102 30.4
Glyma.18G100300 Glycine max HOM05D000097 ORTHO05D000041 2.0e-06 56.6 118 29.7
Manes.15G116900 Manihot esculenta HOM05D000097 ORTHO05D000041 2.0e-06 56.6 127 27.6
Solyc09g098060.3 Solanum lycopersicum HOM05D000097 ORTHO05D009673 2.0e-06 56.6 100 38.0
Sopen09g035980 Solanum pennellii HOM05D000097 ORTHO05D009673 2.0e-06 56.6 100 38.0
GSVIVG01012264001 Vitis vinifera HOM05D000097 ORTHO05D000041 2.0e-06 56.6 105 34.3
Glyma.15G087500 Glycine max HOM05D000097 ORTHO05D000041 2.6e-06 56.2 104 33.7
Gohir.A06G151700 Gossypium hirsutum HOM05D000097 ORTHO05D000041 2.6e-06 56.2 96 31.2
Lj1C52T4 Lonicera japonica HOM05D000097 ORTHO05D000041 2.6e-06 56.2 91 36.3
Manes.03G147700 Manihot esculenta HOM05D000097 ORTHO05D000041 2.6e-06 56.2 95 30.5
PGR119G1681 Punica granatum HOM05D000097 ORTHO05D000041 2.6e-06 56.2 98 29.6
QL10p054050 Quercus lobata HOM05D000264 ORTHO05D000152 2.6e-06 56.2 66 37.9
Thecc.06G229100 Theobroma cacao HOM05D000097 ORTHO05D000041 2.6e-06 56.2 117 27.4
VMungo0540G0336 Vigna mungo HOM05D000097 ORTHO05D000041 2.6e-06 56.2 98 28.6
GSVIVG01001214001 Vitis vinifera HOM05D000097 ORTHO05D000041 2.6e-06 56.2 64 42.2
GSVIVG01017534001 Vitis vinifera HOM05D000097 ORTHO05D000041 2.6e-06 56.2 94 30.9
Ciclev10027281m.g Citrus clementina HOM05D000264 ORTHO05D000152 3.5e-06 55.8 88 34.1
FvH4_1g10402 Fragaria vesca HOM05D000264 ORTHO05D001690 3.5e-06 55.8 86 32.6
Lj1C54T4 Lonicera japonica HOM05D000097 ORTHO05D000041 3.5e-06 55.8 95 33.7
Lj3A466T17 Lonicera japonica HOM05D000264 ORTHO05D000152 3.5e-06 55.8 82 35.4
QL05p071595 Quercus lobata HOM05D000097 ORTHO05D000041 3.5e-06 55.8 121 28.1
Sed0024865 Sechium edule HOM05D000097 ORTHO05D000041 3.5e-06 55.8 98 31.6
GSVIVG01017530001 Vitis vinifera HOM05D000097 ORTHO05D000041 3.5e-06 55.8 135 25.2
CiPaw.08G151700 Carya illinoinensis HOM05D000097 ORTHO05D000041 4.5e-06 55.5 95 34.7
COL.COLO4_31842 Corchorus olitorius HOM05D000097 ORTHO05D000041 4.5e-06 55.5 123 26.8
PSO675G0317 Papaver somniferum HOM05D000097 ORTHO05D000041 4.5e-06 55.5 122 27.9
BolC3t16390H Brassica oleracea HOM05D000264 ORTHO05D000152 5.9e-06 55.1 100 30.0
Ca_00479_v3 Cicer arietinum L. HOM05D000097 ORTHO05D000041 5.9e-06 55.1 98 34.7
MELO3C014331.2 Cucumis melo HOM05D000097 ORTHO05D000041 5.9e-06 55.1 92 29.3
GSVIVG01019157001 Vitis vinifera HOM05D000097 ORTHO05D000041 5.9e-06 55.1 94 34.0
BolC3t16381H Brassica oleracea HOM05D000264 ORTHO05D000152 7.7e-06 54.7 100 30.0
FAN20G0601 Fragaria x ananassa HOM05D000097 ORTHO05D000041 7.7e-06 54.7 102 31.4
Glyma.08G314100 Glycine max HOM05D000097 ORTHO05D000041 7.7e-06 54.7 93 34.4
MD11G1279300 Malus domestica HOM05D000097 ORTHO05D000041 7.7e-06 54.7 99 29.3
Medtr2g020510 Medicago truncatula HOM05D000097 ORTHO05D000041 7.7e-06 54.7 94 30.9
Nn5g27907 Nelumbo nucifera HOM05D000097 ORTHO05D000041 7.7e-06 54.7 101 31.7
Prupe.1G007700 Prunus persica HOM05D000097 ORTHO05D000041 7.7e-06 54.7 91 33.0
Prupe.4G202700 Prunus persica HOM05D000264 ORTHO05D000152 7.7e-06 54.7 93 34.4
PGR142G2411 Punica granatum HOM05D000097 ORTHO05D000041 7.7e-06 54.7 97 34.0
QL12p041792 Quercus lobata HOM05D000097 ORTHO05D000041 7.7e-06 54.7 105 29.5
GSVIVG01001212001 Vitis vinifera HOM05D000097 ORTHO05D000041 7.7e-06 54.7 128 28.9
GSVIVG01017541001 Vitis vinifera HOM05D000097 ORTHO05D000041 7.7e-06 54.7 135 25.2
GSVIVG01020905001 Vitis vinifera HOM05D000264 ORTHO05D000152 7.7e-06 54.7 86 34.9


User provided reference genes

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