Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031126 Camellia sinensis var. sinensis HOM05D004880 ORTHO05D006130 2.4e-223 778.5 387 100.0
Rhsim03G0002700 Rhododendron simsii HOM05D004880 ORTHO05D006130 5.8e-185 651.0 408 79.4
RhsimUnG0014100 Rhododendron simsii HOM05D004880 ORTHO05D006130 2.9e-184 648.7 408 79.2
Actinidia22070 Actinidia chinensis HOM05D004880 ORTHO05D006130 2.1e-182 642.5 408 80.1
Dinv24034 Davidia involucrata HOM05D004880 ORTHO05D006130 1.9e-180 636.0 409 77.5
Actinidia38600 Actinidia chinensis HOM05D004880 ORTHO05D006130 1.8e-178 629.4 407 77.1
Nitab4.5_0002532g0010 Nicotiana tabacum HOM05D004880 ORTHO05D006130 9.1e-170 600.5 408 72.5
Nitab4.5_0005082g0030 Nicotiana tabacum HOM05D004880 ORTHO05D006130 1.2e-169 600.1 408 72.1
GSVIVG01033434001 Vitis vinifera HOM05D004880 ORTHO05D006130 1.5e-169 599.7 408 74.0
Haze_20052 Corylus avellana HOM05D004880 ORTHO05D006130 7.7e-169 597.4 408 73.5
CiPaw.09G027000 Carya illinoinensis HOM05D004880 ORTHO05D006130 1.3e-168 596.7 408 73.5
Atru.chr8.1200 Acer truncatum HOM05D004880 ORTHO05D006130 1.7e-168 596.3 405 73.1
Haze_20059 Corylus avellana HOM05D004880 ORTHO05D006130 2.2e-168 595.9 408 73.3
Prupe.7G084800 Prunus persica HOM05D004880 ORTHO05D006130 3.8e-168 595.1 408 72.8
Lj1A1134T63 Lonicera japonica HOM05D004880 ORTHO05D006130 1.4e-167 593.2 410 73.2
RcHm_v2.0_Chr3g0478791 Rosa chinensis HOM05D004880 ORTHO05D006130 2.1e-166 589.3 408 71.8
Sabra16G0064000 Salix brachista HOM05D004880 ORTHO05D006130 6.1e-166 587.8 408 71.6
Sabra06G0150800 Salix brachista HOM05D004880 ORTHO05D006130 7.9e-166 587.4 408 72.1
Potri.016G062100 Populus trichocarpa HOM05D004880 ORTHO05D006130 1.8e-165 586.3 408 71.3
CANSAT64G2835 Cannabis sativa HOM05D004880 ORTHO05D006130 2.0e-164 582.8 411 71.0
CAN.G8.1 Capsicum annuum HOM05D004880 ORTHO05D006130 9.7e-164 580.5 405 70.9
Potri.006G196200 Populus trichocarpa HOM05D004880 ORTHO05D006130 9.7e-164 580.5 408 71.1
MD14G1051200 Malus domestica HOM05D004880 ORTHO05D006130 6.3e-163 577.8 408 70.1
Eucgr.K01870 Eucalyptus grandis HOM05D004880 ORTHO05D006130 1.8e-162 576.2 408 70.8
TWI74G0273 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 2.4e-162 575.9 408 69.4
QL07p025081 Quercus lobata HOM05D004880 ORTHO05D006130 3.1e-162 575.5 407 72.5
QL07p025096 Quercus lobata HOM05D004880 ORTHO05D006130 3.1e-162 575.5 407 72.5
DCAR_017041 Daucus carota HOM05D004880 ORTHO05D006130 6.9e-162 574.3 405 71.1
PGSC0003DMG400001105 Solanum tuberosum HOM05D004880 ORTHO05D006130 9.1e-162 573.9 408 69.9
HanXRQChr14g0438921 Helianthus annuus HOM05D004880 ORTHO05D006130 2.6e-161 572.4 406 71.2
PGR142G4320 Punica granatum HOM05D004880 ORTHO05D006130 2.6e-161 572.4 409 70.9
MD12G1052800 Malus domestica HOM05D004880 ORTHO05D006130 3.4e-161 572.0 408 69.4
Manes.08G040500 Manihot esculenta HOM05D004880 ORTHO05D006130 3.4e-161 572.0 409 71.1
Gorai.006G144600 Gossypium raimondii HOM05D004880 ORTHO05D006130 4.5e-161 571.6 402 71.4
Solyc03g051970.3 Solanum lycopersicum HOM05D004880 ORTHO05D006130 4.5e-161 571.6 401 70.6
Migut.J01871 Erythranthe guttata HOM05D004880 ORTHO05D006130 5.9e-161 571.2 408 71.1
Gohir.D09G125600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 7.7e-161 570.9 402 71.4
Sopen03g011420 Solanum pennellii HOM05D004880 ORTHO05D006130 7.7e-161 570.9 401 70.6
TWI77G0767 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 1.0e-160 570.5 408 69.1
Lsat_1_v5_gn_2_57080 Lactuca sativa HOM05D004880 ORTHO05D006130 1.3e-160 570.1 404 71.3
QL10p026397 Quercus lobata HOM05D004880 ORTHO05D006130 1.3e-160 570.1 407 71.5
Ciclev10011869m.g Citrus clementina HOM05D004880 ORTHO05D006130 3.8e-160 568.5 405 70.4
Cc06_g23350 Coffea canephora HOM05D004880 ORTHO05D006130 3.8e-160 568.5 408 70.6
FvH4_6g21550 Fragaria vesca HOM05D004880 ORTHO05D006130 8.5e-160 567.4 408 69.6
FAN14G3637 Fragaria x ananassa HOM05D004880 ORTHO05D006130 8.5e-160 567.4 408 69.6
Thecc.05G178700 Theobroma cacao HOM05D004880 ORTHO05D006130 8.5e-160 567.4 408 71.3
Gohir.A09G129600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 1.9e-159 566.2 402 70.6
Duzib093G1906 Durio zibethinus HOM05D004880 ORTHO05D006130 2.5e-159 565.8 408 70.1
Lsat_1_v5_gn_1_60360 Lactuca sativa HOM05D004880 ORTHO05D006130 7.2e-159 564.3 405 69.6
Cpa.g.sc85.30 Carica papaya HOM05D004880 ORTHO05D006130 2.7e-158 562.4 408 69.4
TAR636G0255 Trochodendron aralioides HOM05D004880 ORTHO05D006130 1.4e-157 560.1 408 70.1
CiPaw.10G024300 Carya illinoinensis HOM05D004880 ORTHO05D006130 1.8e-157 559.7 408 70.3
Nn7g35913 Nelumbo nucifera HOM05D004880 ORTHO05D006130 1.8e-157 559.7 408 69.4
HanXRQChr01g0024571 Helianthus annuus HOM05D004880 ORTHO05D006130 3.0e-157 558.9 406 69.0
vmacro12554 Vaccinium macrocarpon HOM05D004880 ORTHO05D006130 3.0e-157 558.9 357 77.6
Duzib128G0581 Durio zibethinus HOM05D004880 ORTHO05D006130 3.9e-157 558.5 408 70.1
SalBow1G7250 Salvia bowleyana HOM05D004880 ORTHO05D006130 5.2e-157 558.1 402 69.7
Oeu063855.2 Olea europaea HOM05D004880 ORTHO05D006130 2.0e-156 556.2 439 66.7
ClCG04G001360 Citrullus lanatus HOM05D004880 ORTHO05D006130 4.4e-156 555.1 408 67.4
Manes.09G040000 Manihot esculenta HOM05D004880 ORTHO05D006130 1.3e-155 553.5 408 70.1
ECA248G1283 Erigeron canadensis HOM05D004880 ORTHO05D006130 1.7e-155 553.1 406 69.5
DCAR_013674 Daucus carota HOM05D004880 ORTHO05D006130 2.2e-155 552.7 427 66.0
SalBow6G2644 Salvia bowleyana HOM05D004880 ORTHO05D006130 4.8e-155 551.6 408 69.9
TAR633G2404 Trochodendron aralioides HOM05D004880 ORTHO05D006130 6.3e-155 551.2 408 67.9
Aqoxy2G00483 Aquilegia oxysepala HOM05D004880 ORTHO05D006130 1.4e-154 550.1 408 67.2
COL.COLO4_29395 Corchorus olitorius HOM05D004880 ORTHO05D006130 1.4e-154 550.1 408 68.9
Sc13g0002510 Simmondsia chinensis HOM05D004880 ORTHO05D006130 2.4e-154 549.3 408 66.4
FAN05G5497 Fragaria x ananassa HOM05D004880 ORTHO05D006130 3.1e-154 548.9 398 69.3
FAN02G2738 Fragaria x ananassa HOM05D004880 ORTHO05D006130 4.1e-154 548.5 398 68.8
MSTRG.26074 Avicennia marina HOM05D004880 ORTHO05D006130 7.0e-154 547.7 408 68.4
FAN09G2092 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.2e-153 547.0 400 68.8
CsaV3_4G031170 Cucumis sativus L. HOM05D004880 ORTHO05D006130 1.6e-153 546.6 408 66.7
MELO3C008990.2 Cucumis melo HOM05D004880 ORTHO05D006130 2.0e-153 546.2 408 67.2
AUR62015294 Chenopodium quinoa HOM05D004880 ORTHO05D006130 7.7e-153 544.3 409 66.7
Sed0002439 Sechium edule HOM05D004880 ORTHO05D006130 8.5e-152 540.8 401 66.6
EL10Ac3g06851 Beta vulgaris HOM05D004880 ORTHO05D006130 2.5e-151 539.3 402 66.9
SGA_v2.0_scaffold274G46503 Striga asiatica HOM05D004880 ORTHO05D006130 3.2e-151 538.9 402 66.7
Peaxi162Scf00463g00322 Petunia axillaris HOM05D004880 ORTHO05D006130 2.7e-150 535.8 394 68.0
Sp5g04380 Schrenkiella parvula HOM05D004880 ORTHO05D006130 3.6e-150 535.4 409 66.7
Glyma.19G204500 Glycine max HOM05D004880 ORTHO05D006130 4.7e-150 535.0 402 66.2
CARHR168890 Cardamine hirsuta HOM05D004880 ORTHO05D006130 1.4e-149 533.5 406 66.7
Glyma.03G207000 Glycine max HOM05D004880 ORTHO05D006130 1.4e-149 533.5 402 66.7
THA.LOC104802772 Tarenaya hassleriana HOM05D004880 ORTHO05D006130 8.8e-149 530.8 403 67.0
Lj2A362T41 Lonicera japonica HOM05D004880 ORTHO05D006130 1.2e-148 530.4 494 59.7
Lj1g0004925 Lotus japonicus HOM05D004880 ORTHO05D006130 1.2e-148 530.4 402 66.7
AT3G58490 Arabidopsis thaliana HOM05D004880 ORTHO05D006130 1.5e-148 530.0 403 66.3
Thhalv10006516m.g Eutrema salsugineum HOM05D004880 ORTHO05D006130 3.3e-148 528.9 406 66.3
A07p24150 Brassica napus HOM05D004880 ORTHO05D006130 9.7e-148 527.3 406 66.0
Carub.0005s2524 Capsella rubella HOM05D004880 ORTHO05D006130 9.7e-148 527.3 406 66.0
BraA07t30059Z Brassica rapa HOM05D004880 ORTHO05D006130 1.3e-147 526.9 406 65.8
Aa31LG10G13060 Aethionema arabicum HOM05D004880 ORTHO05D006130 2.8e-147 525.8 403 65.3
BcaC08g44920 Brassica carinata HOM05D004880 ORTHO05D006130 4.8e-147 525.0 406 65.8
C06p25460 Brassica napus HOM05D004880 ORTHO05D006130 4.8e-147 525.0 406 65.8
BolC6t37708H Brassica oleracea HOM05D004880 ORTHO05D006130 4.8e-147 525.0 406 65.8
VMungo1383G0203 Vigna mungo HOM05D004880 ORTHO05D006130 6.3e-147 524.6 402 66.4
Ah.13g075550 Amaranthus hybridus HOM05D004880 ORTHO05D006130 4.1e-146 521.9 403 65.5
Phvul.001G200400 Phaseolus vulgaris HOM05D004880 ORTHO05D006130 5.3e-146 521.5 402 65.2
AL5G40260 Arabidopsis lyrata HOM05D004880 ORTHO05D006130 7.0e-146 521.2 406 66.3
PSO339G2581 Papaver somniferum HOM05D004880 ORTHO05D006130 9.1e-146 520.8 405 64.9
PSO384G1868 Papaver somniferum HOM05D004880 ORTHO05D006130 1.6e-145 520.0 405 64.9
Lalb_Chr01g0017621 Lupinus albus HOM05D004880 ORTHO05D006130 1.0e-144 517.3 397 66.0
Ca_09100_v3 Cicer arietinum L. HOM05D004880 ORTHO05D006130 1.7e-144 516.5 402 64.7
Aa31LG1G24310 Aethionema arabicum HOM05D004880 ORTHO05D006130 2.2e-144 516.2 402 66.4
arahy.Tifrunner.gnm1.ann1.LHW1VF Arachis hypogaea HOM05D004880 ORTHO05D006130 1.5e-143 513.5 402 66.2
arahy.Tifrunner.gnm1.ann1.4QW8I5 Arachis hypogaea HOM05D004880 ORTHO05D006130 4.2e-143 511.9 402 65.9
TAR623G0618 Trochodendron aralioides HOM05D004880 ORTHO05D006130 5.5e-143 511.5 359 70.8
TPR.G32306 Trifolium pratense HOM05D004880 ORTHO05D006130 6.8e-141 504.6 402 63.4
Lalb_Chr25g0287641 Lupinus albus HOM05D004880 ORTHO05D006130 2.0e-140 503.1 407 62.7
Medtr7g107270 Medicago truncatula HOM05D004880 ORTHO05D006130 3.4e-140 502.3 402 62.4
MBI04_g09734_MAGBIO Magnolia biondii HOM05D004880 ORTHO05D006130 2.2e-139 499.6 400 63.8
ATR0001G036 Amborella trichopoda HOM05D004880 ORTHO05D006130 2.4e-138 496.1 408 62.7
ECA238G1506 Erigeron canadensis HOM05D004880 ORTHO05D001620 2.4e-138 496.1 351 70.9
Os03g0805400 Oryza sativa ssp. japonica HOM05D004880 ORTHO05D006130 4.2e-135 485.3 402 60.0
PSO384G4146 Papaver somniferum HOM05D004880 ORTHO05D006130 4.7e-134 481.9 405 59.8
AUR62032743 Chenopodium quinoa HOM05D004880 ORTHO05D006130 8.0e-134 481.1 409 61.1
PSO339G4595 Papaver somniferum HOM05D004880 ORTHO05D006130 1.0e-133 480.7 405 59.5
Cfa020124 Carpinus fangiana HOM05D004880 ORTHO05D006130 2.9e-128 462.6 313 75.1
HPP92_023567 Vanilla planifolia HOM05D004880 ORTHO05D006130 1.9e-127 459.9 407 55.8
Zm00001eb061460 Zea mays HOM05D004880 ORTHO05D006130 3.6e-126 455.7 403 56.8
HPP92_007945 Vanilla planifolia HOM05D004880 ORTHO05D006130 3.0e-120 436.0 405 55.6
SEGI_41601 Sequoiadendron giganteum HOM05D004880 ORTHO05D006130 2.0e-116 423.3 416 53.4
SHI30063 Sapria himalayana HOM05D004880 ORTHO05D006130 4.1e-114 415.6 402 56.0
Ah.04g153030 Amaranthus hybridus HOM05D004880 ORTHO05D006130 1.6e-113 413.7 315 67.3
Hma1.2p1_0124F.1_g058410 Hydrangea macrophylla HOM05D004880 ORTHO05D006130 2.1e-113 413.3 283 73.9
CDE10G0990 Ceratophyllum demersum HOM05D004880 ORTHO05D006130 9.9e-100 367.9 378 53.7
Zm00001eb212610 Zea mays HOM05D004880 ORTHO05D006130 2.3e-96 356.7 313 57.8
Psat3g026000 Pisum sativum HOM05D004880 ORTHO05D006130 6.2e-94 348.6 267 64.0
Hund19219 Selenicereus undatus HOM05D004880 ORTHO05D006130 4.0e-93 345.9 273 62.6
SMO356G0032 Selaginella moellendorffii HOM05D004880 ORTHO05D006130 2.9e-91 339.7 410 45.9
Mapoly0023s0042 Marchantia polymorpha HOM05D004880 ORTHO05D006130 1.9e-90 337.0 420 44.0
Rhsim03G0002900 Rhododendron simsii HOM05D004880 ORTHO05D006130 5.4e-90 335.5 412 51.0
AagrBONN_evm.TU.Sc2ySwM_362.985 Anthoceros agrestis HOM05D004880 ORTHO05D006130 6.4e-83 312.0 421 44.7
Lalb_Chr20g0111081 Lupinus albus HOM05D004880 ORTHO05D006130 1.6e-81 307.4 253 64.0
Actinidia17290 Actinidia chinensis HOM05D000477 ORTHO05D000338 2.6e-76 290.0 184 76.6
Pp3c11_15430 Physcomitrium patens HOM05D004880 ORTHO05D006130 7.6e-76 288.5 406 41.1
Dinv16341 Davidia involucrata HOM05D004880 ORTHO05D006130 5.6e-71 272.3 173 79.2
Pp3c2_26340 Physcomitrium patens HOM05D004880 ORTHO05D006130 3.7e-70 269.6 441 39.5
HPP92_020367 Vanilla planifolia HOM05D004880 ORTHO05D006130 9.0e-61 238.4 213 56.3
Dinv16340 Davidia involucrata HOM05D004880 ORTHO05D006130 6.1e-57 225.7 161 72.0
Oeu057591.1 Olea europaea HOM05D004880 ORTHO05D006130 3.0e-56 223.4 176 64.2
Zm00001eb272460 Zea mays HOM05D004880 ORTHO05D006130 1.7e-43 181.0 162 55.6
CBR_g27899 Chara braunii HOM05D004880 ORTHO05D006130 8.5e-43 178.7 324 36.1
FvH4_1g29340 Fragaria vesca HOM05D004880 ORTHO05D006130 5.2e-40 169.5 132 64.4
HPP92_020366 Vanilla planifolia HOM05D004880 ORTHO05D006130 4.4e-39 166.4 194 49.0
RhsimUnG0012500 Rhododendron simsii HOM05D001884 ORTHO05D001890 1.3e-38 164.9 93 83.9
Zm00001eb359710 Zea mays HOM05D004880 ORTHO05D006130 5.9e-36 156.0 151 54.3
Lalb_Chr20g0111071 Lupinus albus HOM05D004880 ORTHO05D006130 1.2e-33 148.3 112 64.3
BcaB02g07520 Brassica carinata HOM05D004880 ORTHO05D006130 1.0e-32 145.2 97 71.1
RhsimUnG0013900 Rhododendron simsii HOM05D004880 ORTHO05D050686 1.7e-27 127.9 97 70.1
RcHm_v2.0_Chr2g0108301 Rosa chinensis HOM05D004880 ORTHO05D050686 1.8e-16 91.3 84 59.5
Migut.J01865 Erythranthe guttata HOM05D004880 ORTHO05D006130 5.7e-15 86.3 57 77.2
CSS0025313 Camellia sinensis var. sinensis HOM05D004880 ORTHO05D113579 9.8e-07 58.9 37 81.1


User provided reference genes

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