Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031085 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 3.0e-255 884.8 482 100.0
CSS0030032 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 1.5e-251 872.5 480 99.2
RhsimUnG0212100 Rhododendron simsii HOM05D004401 ORTHO05D005169 2.0e-174 616.3 485 73.8
Actinidia12088 Actinidia chinensis HOM05D004401 ORTHO05D005169 4.9e-165 585.1 485 72.2
Hma1.2p1_0739F.1_g211280 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 8.4e-165 584.3 489 71.6
Dinv39923 Davidia involucrata HOM05D004401 ORTHO05D005169 9.6e-161 570.9 486 70.2
Haze_15165 Corylus avellana HOM05D004401 ORTHO05D005169 2.4e-156 556.2 495 68.1
vmacro05286 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 1.1e-151 540.8 592 59.0
Cfa004233 Carpinus fangiana HOM05D004401 ORTHO05D005169 1.3e-149 533.9 495 66.1
Hma1.2p1_0261F.1_g104910 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 2.9e-149 532.7 491 68.0
QL06p044258 Quercus lobata HOM05D004401 ORTHO05D005169 9.3e-148 527.7 440 69.3
Atru.chr3.472 Acer truncatum HOM05D004401 ORTHO05D005169 2.1e-147 526.6 468 66.5
RcHm_v2.0_Chr2g0103241 Rosa chinensis HOM05D004401 ORTHO05D005169 7.9e-147 524.6 491 65.8
COL.COLO4_22179 Corchorus olitorius HOM05D004401 ORTHO05D005169 1.8e-146 523.5 468 64.1
Nitab4.5_0000108g0170 Nicotiana tabacum HOM05D004401 ORTHO05D005169 3.3e-145 519.2 487 65.3
Nitab4.5_0005594g0020 Nicotiana tabacum HOM05D004401 ORTHO05D005169 5.6e-145 518.5 487 65.7
Prupe.7G145400 Prunus persica HOM05D004401 ORTHO05D005169 2.8e-144 516.2 483 66.0
FvH4_1g14490 Fragaria vesca HOM05D004401 ORTHO05D005169 6.2e-144 515.0 492 63.8
PGSC0003DMG400010033 Solanum tuberosum HOM05D004401 ORTHO05D005169 4.0e-143 512.3 485 63.9
MSTRG.15405 Avicennia marina HOM05D004401 ORTHO05D005169 5.3e-143 511.9 484 65.5
FAN19G2756 Fragaria x ananassa HOM05D004401 ORTHO05D005169 1.5e-142 510.4 492 63.4
CiPaw.01G029200 Carya illinoinensis HOM05D004401 ORTHO05D005169 2.6e-142 509.6 497 63.0
CAN.G836.19 Capsicum annuum HOM05D004401 ORTHO05D005169 1.3e-141 507.3 489 64.0
Sopen02g034780 Solanum pennellii HOM05D004401 ORTHO05D005169 2.5e-140 503.1 491 62.9
Rhsim08G0109400 Rhododendron simsii HOM05D004401 ORTHO05D005169 2.3e-138 496.5 502 64.7
Manes.13G132200 Manihot esculenta HOM05D004401 ORTHO05D005169 6.7e-138 495.0 479 64.3
Peaxi162Scf00535g00620 Petunia axillaris HOM05D004401 ORTHO05D005169 1.5e-137 493.8 488 63.1
Migut.K00842 Erythranthe guttata HOM05D004401 ORTHO05D005169 5.6e-137 491.9 489 62.8
MD15G1273200 Malus domestica HOM05D004401 ORTHO05D005169 5.6e-137 491.9 484 63.4
Solyc02g090090.3 Solanum lycopersicum HOM05D004401 ORTHO05D005169 5.6e-137 491.9 486 62.3
Ciclev10025507m.g Citrus clementina HOM05D004401 ORTHO05D005169 1.8e-135 486.9 486 61.7
CSS0031753 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 2.6e-134 483.0 370 77.0
Cc07_g05390 Coffea canephora HOM05D004401 ORTHO05D005169 1.7e-133 480.3 492 60.6
MD02G1158400 Malus domestica HOM05D004401 ORTHO05D005169 4.9e-133 478.8 470 63.4
Cpa.g.sc15.60 Carica papaya HOM05D004401 ORTHO05D005169 3.2e-132 476.1 486 61.1
Potri.007G034200 Populus trichocarpa HOM05D004401 ORTHO05D005169 3.2e-132 476.1 465 62.2
Sed0006552 Sechium edule HOM05D004401 ORTHO05D005169 1.2e-131 474.2 500 60.0
Oeu020614.1 Olea europaea HOM05D004401 ORTHO05D005169 2.1e-131 473.4 485 62.7
PGR102G2627 Punica granatum HOM05D004401 ORTHO05D005169 6.1e-131 471.9 494 61.1
Duzib147G0010 Durio zibethinus HOM05D004401 ORTHO05D005169 5.1e-130 468.8 496 58.3
Gohir.D11G048500 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.1e-129 467.6 483 59.2
Eucgr.H01940 Eucalyptus grandis HOM05D004401 ORTHO05D005169 7.4e-129 464.9 431 65.9
Potri.005G130800 Populus trichocarpa HOM05D004401 ORTHO05D005169 1.8e-127 460.3 493 60.6
Hund14120 Selenicereus undatus HOM05D004401 ORTHO05D005169 3.1e-127 459.5 480 60.6
TWI73G0228 Tripterygium wilfordii HOM05D004401 ORTHO05D005169 3.1e-127 459.5 493 58.2
FAN23G0479 Fragaria x ananassa HOM05D004401 ORTHO05D005169 5.3e-127 458.8 499 59.7
FAN26G1141 Fragaria x ananassa HOM05D004401 ORTHO05D005169 1.5e-126 457.2 499 59.5
vmacro17880 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 2.0e-126 456.8 586 54.6
FAN28G2641 Fragaria x ananassa HOM05D004401 ORTHO05D005169 3.4e-126 456.1 496 59.3
TPR.G29860 Trifolium pratense HOM05D004401 ORTHO05D005169 7.7e-126 454.9 481 58.2
Gohir.D03G018900 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.0e-125 454.5 479 58.7
Gorai.003G019300 Gossypium raimondii HOM05D004401 ORTHO05D005169 1.7e-125 453.8 479 58.7
Ca_24810_v3 Cicer arietinum L. HOM05D004401 ORTHO05D005169 2.2e-125 453.4 472 58.5
ECA232G2743 Erigeron canadensis HOM05D004401 ORTHO05D005169 5.0e-125 452.2 481 60.7
Gohir.A02G161600 Gossypium hirsutum HOM05D004401 ORTHO05D005169 6.5e-125 451.8 479 58.5
SalBow1G3467 Salvia bowleyana HOM05D004401 ORTHO05D005169 3.2e-124 449.5 477 60.6
SalBow1G0657 Salvia bowleyana HOM05D004401 ORTHO05D005169 7.2e-124 448.4 477 60.2
Gorai.007G052100 Gossypium raimondii HOM05D004401 ORTHO05D005169 2.7e-123 446.4 483 57.1
Duzib264G0051 Durio zibethinus HOM05D004401 ORTHO05D005169 6.1e-123 445.3 481 57.0
Lj4A136G82 Lonicera japonica HOM05D004401 ORTHO05D005169 5.1e-122 442.2 487 58.5
Lalb_Chr05g0213081 Lupinus albus HOM05D004401 ORTHO05D005169 5.1e-122 442.2 485 57.7
Glyma.01G181200 Glycine max HOM05D004401 ORTHO05D005169 2.5e-121 439.9 484 57.4
Glyma.11G061000 Glycine max HOM05D004401 ORTHO05D005169 2.5e-121 439.9 484 57.2
ClCG02G013050 Citrullus lanatus HOM05D004401 ORTHO05D005169 7.4e-121 438.3 502 59.0
Sabra07G0029800 Salix brachista HOM05D004401 ORTHO05D005169 9.7e-121 438.0 506 56.7
Gohir.A11G045000 Gossypium hirsutum HOM05D004401 ORTHO05D005169 2.2e-120 436.8 483 56.1
MELO3C020916.2 Cucumis melo HOM05D004401 ORTHO05D005169 3.1e-119 433.0 503 57.9
DCAR_025670 Daucus carota HOM05D004401 ORTHO05D005169 5.3e-119 432.2 488 56.8
TAR625G0432 Trochodendron aralioides HOM05D004401 ORTHO05D005169 1.2e-118 431.0 456 58.3
Medtr5g018600 Medicago truncatula HOM05D004401 ORTHO05D005169 1.5e-118 430.6 482 56.6
Lalb_Chr09g0322851 Lupinus albus HOM05D004401 ORTHO05D005169 1.3e-117 427.6 485 56.5
EL10Ac6g14845 Beta vulgaris HOM05D004401 ORTHO05D005169 3.8e-117 426.0 506 55.5
CsaV3_2G017130 Cucumis sativus L. HOM05D004401 ORTHO05D005169 6.5e-117 425.2 502 57.0
Nn6g32163 Nelumbo nucifera HOM05D004401 ORTHO05D005169 4.2e-116 422.5 480 56.2
arahy.Tifrunner.gnm1.ann1.6IB1GK Arachis hypogaea HOM05D004401 ORTHO05D005169 2.1e-115 420.2 540 52.8
unitig_0.g2308 Utricularia gibba HOM05D004401 ORTHO05D005169 1.0e-114 417.9 465 59.1
THA.LOC104807569 Tarenaya hassleriana HOM05D004401 ORTHO05D005169 6.7e-114 415.2 493 55.2
Thecc.01G045700 Theobroma cacao HOM05D004401 ORTHO05D005169 1.1e-113 414.5 479 54.1
Carub.0007s0340 Capsella rubella HOM05D004401 ORTHO05D005169 1.5e-113 414.1 508 53.5
HanXRQChr09g0264391 Helianthus annuus HOM05D004401 ORTHO05D005169 5.7e-113 412.1 480 56.5
GSVIVG01003774001 Vitis vinifera HOM05D004401 ORTHO05D005169 2.8e-112 409.8 340 70.9
BolC3t20224H Brassica oleracea HOM05D004401 ORTHO05D005169 3.1e-111 406.4 508 53.1
HanXRQChr15g0489601 Helianthus annuus HOM05D004401 ORTHO05D005169 5.3e-111 405.6 479 57.4
Sc03g0001200 Simmondsia chinensis HOM05D004401 ORTHO05D005169 7.0e-111 405.2 388 63.4
Thhalv10025057m.g Eutrema salsugineum HOM05D004401 ORTHO05D005169 1.2e-110 404.4 473 55.2
VMungo1215G0638 Vigna mungo HOM05D004401 ORTHO05D005169 1.2e-110 404.4 486 53.1
arahy.Tifrunner.gnm1.ann1.ZW82SR Arachis hypogaea HOM05D004401 ORTHO05D005169 1.5e-110 404.1 532 51.7
CANSAT01G2530 Cannabis sativa HOM05D004401 ORTHO05D005169 2.6e-110 403.3 493 53.5
AUR62027242 Chenopodium quinoa HOM05D004401 ORTHO05D005169 2.6e-110 403.3 503 52.9
CARHR245290 Cardamine hirsuta HOM05D004401 ORTHO05D005169 4.5e-110 402.5 486 53.1
Lsat_1_v5_gn_4_177820 Lactuca sativa HOM05D004401 ORTHO05D005169 7.7e-110 401.7 481 55.5
PSO170G1133 Papaver somniferum HOM05D004401 ORTHO05D005169 3.2e-108 396.4 432 56.7
PSO700G0114 Papaver somniferum HOM05D004401 ORTHO05D005169 3.2e-108 396.4 429 56.6
Lj2g0012735 Lotus japonicus HOM05D004401 ORTHO05D005169 2.1e-107 393.7 487 52.0
BraA08t34203Z Brassica rapa HOM05D004401 ORTHO05D005169 1.8e-106 390.6 495 53.3
MBI16_g31340_MAGBIO Magnolia biondii HOM05D004401 ORTHO05D005169 6.7e-106 388.7 457 53.2
Sed0017517 Sechium edule HOM05D004401 ORTHO05D005169 8.2e-104 381.7 486 54.5
Phvul.002G023700 Phaseolus vulgaris HOM05D004401 ORTHO05D005169 2.4e-103 380.2 488 51.8
TAR381G0351 Trochodendron aralioides HOM05D004401 ORTHO05D005169 1.6e-102 377.5 459 53.6
C03p79770 Brassica napus HOM05D004401 ORTHO05D005169 7.7e-102 375.2 497 51.3
AL7G14010 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 1.3e-101 374.4 489 51.3
Gorai.007G208200 Gossypium raimondii HOM05D004401 ORTHO05D005169 1.1e-100 371.3 474 53.4
A08p22480 Brassica napus HOM05D004401 ORTHO05D005169 1.2e-99 367.9 490 50.8
Ah.03g142140 Amaranthus hybridus HOM05D004401 ORTHO05D005169 2.7e-99 366.7 560 47.7
AUR62003232 Chenopodium quinoa HOM05D004401 ORTHO05D005169 8.8e-98 361.7 495 50.1
AT4G37210 Arabidopsis thaliana HOM05D004401 ORTHO05D005169 9.7e-97 358.2 442 52.7
Dinv26777 Davidia involucrata HOM05D004401 ORTHO05D005169 7.7e-94 348.6 247 79.4
Gohir.D11G194700 Gossypium hirsutum HOM05D004401 ORTHO05D005169 3.2e-92 343.2 474 50.6
Aqoxy5G01748 Aquilegia oxysepala HOM05D004401 ORTHO05D005169 1.6e-91 340.9 478 49.8
Ah.02g126040 Amaranthus hybridus HOM05D004401 ORTHO05D005169 4.0e-90 336.3 460 50.7
C01p02190 Brassica napus HOM05D004401 ORTHO05D005169 2.2e-88 330.5 472 48.3
Oeu032116.1 Olea europaea HOM05D004401 ORTHO05D005169 4.5e-86 322.8 274 71.9
Sabra05G0106000 Salix brachista HOM05D004401 ORTHO05D005169 1.0e-85 321.6 357 59.4
Gohir.A11G188200 Gossypium hirsutum HOM05D004401 ORTHO05D005169 2.3e-85 320.5 472 48.1
CDE06G0525 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 1.1e-84 318.2 453 47.2
BraA01t00189Z Brassica rapa HOM05D004401 ORTHO05D005169 1.3e-80 304.7 457 47.7
Sp7g34580 Schrenkiella parvula HOM05D004401 ORTHO05D005169 1.7e-80 304.3 385 50.4
A01p02010 Brassica napus HOM05D004401 ORTHO05D005169 9.2e-79 298.5 388 50.0
SHI08724 Sapria himalayana HOM05D004401 ORTHO05D005169 4.5e-78 296.2 422 47.6
BolC1t00211H Brassica oleracea HOM05D004401 ORTHO05D005169 1.7e-77 294.3 472 45.3
CDE04G2769 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 2.3e-74 283.9 419 48.0
HPP92_019643 Vanilla planifolia HOM05D004401 ORTHO05D005169 1.5e-73 281.2 433 45.0
SGA_v2.0_scaffold62G21530 Striga asiatica HOM05D004401 ORTHO05D005169 6.4e-72 275.8 293 60.8
Os07g0122400 Oryza sativa ssp. japonica HOM05D004401 ORTHO05D005169 4.7e-67 259.6 433 42.7
ATR0733G114 Amborella trichopoda HOM05D004401 ORTHO05D005169 2.1e-62 244.2 493 39.1
Zm00001eb117930 Zea mays HOM05D004401 ORTHO05D005169 1.0e-61 241.9 403 43.4
Aa31LG6G13770 Aethionema arabicum HOM05D004401 ORTHO05D005169 1.0e-53 215.3 265 52.5
AagrBONN_evm.TU.Sc2ySwM_228.4759 Anthoceros agrestis HOM05D004401 ORTHO05D005169 2.1e-43 181.0 407 34.6
Pp3c24_5960 Physcomitrium patens HOM05D004401 ORTHO05D005169 2.1e-43 181.0 465 32.5
Sc07g0000190 Simmondsia chinensis HOM05D004401 ORTHO05D005169 4.0e-42 176.8 281 45.6
Mapoly0080s0039 Marchantia polymorpha HOM05D004401 ORTHO05D005169 4.9e-32 143.3 412 30.8
Sabra05G0106100 Salix brachista HOM05D004401 ORTHO05D005169 8.4e-32 142.5 191 51.8
Oeu023283.1 Olea europaea HOM05D004401 ORTHO05D005169 1.5e-28 131.7 112 62.5
Rhsim06G0070300 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.3e-27 128.6 300 40.0
Lsat_1_v5_gn_1_2961 Lactuca sativa HOM05D004401 ORTHO05D005169 6.9e-26 122.9 172 45.3
Gohir.A12G038266 Gossypium hirsutum HOM05D004401 ORTHO05D005169 2.9e-24 117.5 100 64.0
Zm00001eb178920 Zea mays HOM05D004401 ORTHO05D005169 1.4e-23 115.2 193 42.5
GSVIVG01003776001 Vitis vinifera HOM05D004401 ORTHO05D005169 3.2e-23 114.0 67 79.1
Glyma.06G250700 Glycine max HOM05D004401 ORTHO05D005169 2.1e-22 111.3 76 71.1
CBR_g26200 Chara braunii HOM05D004401 ORTHO05D005169 1.0e-21 109.0 459 27.0
Zm00001eb343330 Zea mays HOM05D004401 ORTHO05D005169 1.1e-20 105.5 184 41.3
Pp3c8_14970 Physcomitrium patens HOM05D004401 ORTHO05D005169 1.6e-19 101.7 298 31.2
Sc07g0000180 Simmondsia chinensis HOM05D004401 ORTHO05D005169 2.6e-17 94.4 129 46.5
BcaNung03516 Brassica carinata HOM05D004401 ORTHO05D005169 7.6e-17 92.8 181 44.8
Zm00001eb130830 Zea mays HOM05D004401 ORTHO05D005169 7.6e-17 92.8 182 36.8
Zm00001eb306620 Zea mays HOM05D022290 ORTHO05D005169 2.5e-15 87.8 195 37.4
Zm00001eb250440 Zea mays HOM05D004401 ORTHO05D005169 4.6e-14 83.6 151 37.7
Psat0s4627g0120 Pisum sativum HOM05D004401 ORTHO05D005169 1.3e-13 82.0 273 33.3
MCO16G464 Micromonas commoda HOM05D004401 ORTHO05D005169 3.9e-13 80.5 411 24.6
SEGI_23846 Sequoiadendron giganteum HOM05D004401 ORTHO05D005169 8.7e-13 79.3 314 29.3
AL2G36200 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 1.6e-11 75.1 152 44.7
Zm00001eb268170 Zea mays HOM05D004401 ORTHO05D005169 3.7e-11 73.9 195 33.8
Sabra02G0102900 Salix brachista HOM05D028338 ORTHO05D050528 3.1e-10 70.9 321 28.0
Potri.002G130800 Populus trichocarpa HOM05D028338 ORTHO05D050528 9.0e-10 69.3 310 27.4
Zm00001eb182160 Zea mays HOM05D004401 ORTHO05D005169 2.0e-09 68.2 107 40.2
Psat0s4627g0080 Pisum sativum HOM05D004401 ORTHO05D005169 2.6e-09 67.8 84 53.6
SMO358G0116 Selaginella moellendorffii HOM05D004401 ORTHO05D005169 6.5e-08 63.2 70 45.7
Zm00001eb268130 Zea mays HOM05D004401 ORTHO05D005169 3.6e-06 57.4 100 44.0


User provided reference genes

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