Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031078 Camellia sinensis var. sinensis HOM05D005912 ORTHO05D007329 1.5e-214 749.2 377 100.0
vmacro20502 Vaccinium macrocarpon HOM05D005912 ORTHO05D007329 3.2e-151 538.9 376 75.8
Actinidia17396 Actinidia chinensis HOM05D005912 ORTHO05D007329 5.9e-150 534.6 345 81.2
Rhsim10G0204000 Rhododendron simsii HOM05D005912 ORTHO05D007329 8.6e-149 530.8 358 76.5
Dinv40154 Davidia involucrata HOM05D005912 ORTHO05D007329 1.9e-148 529.6 364 75.8
Lj2A487G56 Lonicera japonica HOM05D005912 ORTHO05D007329 1.6e-126 456.8 384 63.3
CiPaw.08G179600 Carya illinoinensis HOM05D005912 ORTHO05D007329 9.6e-124 447.6 341 69.8
TAR625G0585 Trochodendron aralioides HOM05D005912 ORTHO05D007329 4.7e-123 445.3 332 68.7
Sabra05G0087400 Salix brachista HOM05D005912 ORTHO05D007329 1.2e-121 440.7 352 63.9
Cfa007040 Carpinus fangiana HOM05D005912 ORTHO05D007329 5.8e-121 438.3 317 71.6
Duzib147G0472 Durio zibethinus HOM05D005912 ORTHO05D007329 2.4e-119 433.0 342 66.1
Gohir.D03G004600 Gossypium hirsutum HOM05D005912 ORTHO05D007329 2.4e-119 433.0 350 62.9
Gohir.A02G175200 Gossypium hirsutum HOM05D005912 ORTHO05D007329 4.2e-119 432.2 350 62.6
Gorai.003G004900 Gossypium raimondii HOM05D005912 ORTHO05D007329 5.4e-119 431.8 351 63.2
Atru.chr3.926 Acer truncatum HOM05D005912 ORTHO05D007329 1.6e-118 430.3 349 63.9
Manes.01G152000 Manihot esculenta HOM05D005912 ORTHO05D007329 2.7e-118 429.5 351 65.5
Haze_03689 Corylus avellana HOM05D005912 ORTHO05D007329 6.0e-118 428.3 317 70.0
Potri.005G106500 Populus trichocarpa HOM05D005912 ORTHO05D007329 1.0e-117 427.6 353 62.3
Thecc.01G010100 Theobroma cacao HOM05D005912 ORTHO05D007329 2.3e-117 426.4 339 63.4
TAR288G0001 Trochodendron aralioides HOM05D005912 ORTHO05D007329 3.9e-117 425.6 338 67.5
QL06p052316 Quercus lobata HOM05D005912 ORTHO05D007329 5.1e-117 425.2 280 75.4
PGR102G2191 Punica granatum HOM05D005912 ORTHO05D007329 3.3e-116 422.5 340 63.2
Ciclev10025822m.g Citrus clementina HOM05D005912 ORTHO05D007329 9.6e-116 421.0 307 68.4
COL.COLO4_09868 Corchorus olitorius HOM05D005912 ORTHO05D007329 1.3e-115 420.6 312 66.7
Nn6g31870 Nelumbo nucifera HOM05D005912 ORTHO05D007329 1.3e-115 420.6 334 66.5
HanXRQChr07g0192501 Helianthus annuus HOM05D005912 ORTHO05D007329 2.0e-113 413.3 342 61.1
TWI73G1263 Tripterygium wilfordii HOM05D005912 ORTHO05D007329 2.0e-113 413.3 346 64.2
Eucgr.J02496 Eucalyptus grandis HOM05D005912 ORTHO05D007329 1.3e-112 410.6 270 74.1
Lj4A227T48 Lonicera japonica HOM05D005912 ORTHO05D007329 1.9e-111 406.8 341 63.3
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 2.4e-111 406.4 351 60.1
Sc07g0001240 Simmondsia chinensis HOM05D005912 ORTHO05D007329 3.2e-111 406.0 334 61.7
Lsat_1_v5_gn_2_75281 Lactuca sativa HOM05D005912 ORTHO05D007329 1.2e-110 404.1 350 60.9
THA.LOC104807519 Tarenaya hassleriana HOM05D005912 ORTHO05D007329 2.1e-110 403.3 362 59.7
Solyc02g083270.4 Solanum lycopersicum HOM05D005912 ORTHO05D007329 2.7e-110 402.9 344 61.0
Sopen02g028060 Solanum pennellii HOM05D005912 ORTHO05D007329 2.7e-110 402.9 344 60.8
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 3.5e-110 402.5 349 59.9
Prupe.7G176300 Prunus persica HOM05D005912 ORTHO05D007329 1.3e-109 400.6 310 66.1
PGSC0003DMG400001581 Solanum tuberosum HOM05D005912 ORTHO05D007329 1.7e-109 400.2 344 60.5
CAN.G890.19 Capsicum annuum HOM05D005912 ORTHO05D007329 1.1e-108 397.5 344 60.2
ClCG01G020670 Citrullus lanatus HOM05D005912 ORTHO05D007329 1.5e-108 397.1 316 63.3
Ah.11g045130 Amaranthus hybridus HOM05D005912 ORTHO05D007329 2.8e-107 392.9 337 57.9
Cc07_g11440 Coffea canephora HOM05D005912 ORTHO05D007329 3.6e-107 392.5 328 61.9
RcHm_v2.0_Chr2g0098181 Rosa chinensis HOM05D005912 ORTHO05D007329 4.8e-107 392.1 364 59.1
AUR62029896 Chenopodium quinoa HOM05D005912 ORTHO05D007329 1.1e-106 391.0 344 56.1
ECA238G3446 Erigeron canadensis HOM05D005912 ORTHO05D007329 1.2e-105 387.5 374 55.6
HanXRQChr14g0442051 Helianthus annuus HOM05D005912 ORTHO05D007329 1.5e-105 387.1 325 62.5
MBI08_g40329_MAGBIO Magnolia biondii HOM05D005912 ORTHO05D007329 7.6e-105 384.8 332 60.5
Aqoxy6G01899 Aquilegia oxysepala HOM05D005912 ORTHO05D007329 1.7e-104 383.6 350 58.3
C01p03300 Brassica napus HOM05D005912 ORTHO05D007329 1.7e-104 383.6 305 63.6
MD02G1122300 Malus domestica HOM05D005912 ORTHO05D007329 1.7e-104 383.6 377 57.3
BolC1t00315H Brassica oleracea HOM05D005912 ORTHO05D007329 2.2e-104 383.3 303 62.7
Thhalv10025477m.g Eutrema salsugineum HOM05D005912 ORTHO05D007329 2.2e-104 383.3 312 60.6
A01p02950 Brassica napus HOM05D005912 ORTHO05D007329 2.9e-104 382.9 296 63.5
BraA01t00278Z Brassica rapa HOM05D005912 ORTHO05D007329 2.9e-104 382.9 296 63.5
FAN26G2135 Fragaria x ananassa HOM05D005912 ORTHO05D007329 3.8e-104 382.5 334 61.1
FAN23G1227 Fragaria x ananassa HOM05D005912 ORTHO05D007329 6.4e-104 381.7 334 60.8
FvH4_1g10920 Fragaria vesca HOM05D005912 ORTHO05D007329 8.4e-104 381.3 334 61.1
Glyma.11G082400 Glycine max HOM05D005912 ORTHO05D007329 3.2e-103 379.4 265 69.1
Phvul.002G112700 Phaseolus vulgaris HOM05D005912 ORTHO05D007329 4.2e-103 379.0 284 65.1
Sp7g33520 Schrenkiella parvula HOM05D005912 ORTHO05D007329 7.1e-103 378.3 308 60.1
Lj2g0008610 Lotus japonicus HOM05D005912 ORTHO05D007329 1.2e-102 377.5 290 64.8
Carub.0007s0449 Capsella rubella HOM05D005912 ORTHO05D007329 2.1e-102 376.7 313 59.4
CARHR244100 Cardamine hirsuta HOM05D005912 ORTHO05D007329 2.7e-102 376.3 313 59.4
CsaV3_6G047590 Cucumis sativus L. HOM05D005912 ORTHO05D007329 1.8e-101 373.6 273 67.0
Ca_24951_v3 Cicer arietinum L. HOM05D005912 ORTHO05D007329 3.9e-101 372.5 306 64.1
Medtr5g023180 Medicago truncatula HOM05D005912 ORTHO05D007329 3.9e-101 372.5 285 66.0
PSO541G6093 Papaver somniferum HOM05D005912 ORTHO05D007329 5.1e-101 372.1 314 59.9
TPR.G25119 Trifolium pratense HOM05D005912 ORTHO05D007329 5.1e-101 372.1 291 65.3
Aa31LG6G12710 Aethionema arabicum HOM05D005912 ORTHO05D007329 6.7e-101 371.7 344 57.3
Sed0007504 Sechium edule HOM05D005912 ORTHO05D007329 1.5e-100 370.5 274 65.7
GSVIVG01002335001 Vitis vinifera HOM05D005912 ORTHO05D007329 1.5e-100 370.5 284 69.4
arahy.Tifrunner.gnm1.ann1.JJKM7S Arachis hypogaea HOM05D005912 ORTHO05D007329 1.9e-100 370.2 299 62.5
arahy.Tifrunner.gnm1.ann1.TNL2KY Arachis hypogaea HOM05D005912 ORTHO05D007329 1.9e-100 370.2 299 62.5
Psat2g151360 Pisum sativum HOM05D005912 ORTHO05D007329 9.6e-100 367.9 291 64.9
PSO675G2300 Papaver somniferum HOM05D005912 ORTHO05D007329 2.8e-99 366.3 314 59.6
BraA08t34122Z Brassica rapa HOM05D005912 ORTHO05D007329 2.4e-98 363.2 260 68.8
EL10Ac5g11470 Beta vulgaris HOM05D005912 ORTHO05D007329 1.5e-97 360.5 346 54.3
AT4G35760 Arabidopsis thaliana HOM05D005912 ORTHO05D007329 4.5e-97 359.0 257 67.7
Migut.L00742 Erythranthe guttata HOM05D005912 ORTHO05D007329 1.7e-96 357.1 360 53.6
ATR0661G434 Amborella trichopoda HOM05D005912 ORTHO05D007329 4.9e-96 355.5 305 58.0
AUR62033809 Chenopodium quinoa HOM05D005912 ORTHO05D007329 6.5e-96 355.1 263 63.1
Lalb_Chr05g0212091 Lupinus albus HOM05D005912 ORTHO05D007329 7.1e-95 351.7 314 56.4
MSTRG.2738 Avicennia marina HOM05D005912 ORTHO05D007329 2.1e-94 350.1 364 53.0
HPP92_022166 Vanilla planifolia HOM05D005912 ORTHO05D007329 5.7e-92 342.0 270 60.4
CDE06G1293 Ceratophyllum demersum HOM05D005912 ORTHO05D007329 2.1e-91 340.1 296 55.7
AL7G15340 Arabidopsis lyrata HOM05D005912 ORTHO05D007329 4.8e-91 339.0 257 64.6
Zm00001eb002560 Zea mays HOM05D005912 ORTHO05D007329 5.9e-89 332.0 290 57.2
Os03g0131500 Oryza sativa ssp. japonica HOM05D005912 ORTHO05D007329 1.3e-88 330.9 317 53.6
SalBow3G0555 Salvia bowleyana HOM05D005912 ORTHO05D007329 9.3e-87 324.7 343 49.9
SGA_v2.0_scaffold108G30993 Striga asiatica HOM05D005912 ORTHO05D007329 8.7e-85 318.2 361 48.8
Oeu012550.1 Olea europaea HOM05D005912 ORTHO05D007329 1.6e-83 313.9 271 59.8
Cpa.g.sc6.326 Carica papaya HOM05D005912 ORTHO05D007329 7.7e-81 305.1 324 52.2
CANSAT25G2212 Cannabis sativa HOM05D005912 ORTHO05D007329 3.7e-75 286.2 212 65.6
MELO3C007950.2 Cucumis melo HOM05D005912 ORTHO05D007329 2.4e-74 283.5 318 48.7
Mapoly0023s0120 Marchantia polymorpha HOM05D005912 ORTHO05D007329 2.1e-70 270.4 298 50.3
SMO119G0150 Selaginella moellendorffii HOM05D005912 ORTHO05D007329 3.6e-70 269.6 271 49.4
Pp3c3_30980 Physcomitrium patens HOM05D005912 ORTHO05D007329 1.0e-69 268.1 270 50.0
CDE03G0408 Ceratophyllum demersum HOM05D005912 ORTHO05D007329 3.3e-68 263.1 296 47.3
CBR_g79494 Chara braunii HOM05D005912 ORTHO05D007329 3.3e-68 263.1 292 47.6
DCAR_011589 Daucus carota HOM05D005912 ORTHO05D007329 1.2e-65 254.6 257 54.5
Glyma.01G161400 Glycine max HOM05D005912 ORTHO05D007329 1.9e-63 247.3 214 59.3
Peaxi162Scf00300g00017 Petunia axillaris HOM05D005912 ORTHO05D007329 7.2e-63 245.4 250 58.0
unitig_88.g27769 Utricularia gibba HOM05D005912 ORTHO05D007329 9.4e-63 245.0 212 57.1
BcaC01g00519 Brassica carinata HOM05D005912 ORTHO05D007329 9.7e-60 235.0 246 53.3
C03p80880 Brassica napus HOM05D000088 ORTHO05D000933 9.7e-60 235.0 246 53.3
A08p21710 Brassica napus HOM05D000088 ORTHO05D000933 4.8e-59 232.6 213 58.7
BolC3t20343H Brassica oleracea HOM05D000088 ORTHO05D000933 1.8e-58 230.7 246 52.8
SGA_v2.0_scaffold132G34545 Striga asiatica HOM05D005912 ORTHO05D007329 5.0e-56 222.6 243 49.8
VMungo1215G0927 Vigna mungo HOM05D005912 ORTHO05D007329 3.2e-55 219.9 184 60.9
BcaNung05729 Brassica carinata HOM05D005912 ORTHO05D007329 8.8e-53 211.8 258 49.2
Migut.H02191 Erythranthe guttata HOM05D005912 ORTHO05D007329 1.2e-52 211.5 351 38.2
Actinidia22932 Actinidia chinensis HOM05D005912 ORTHO05D007329 2.0e-49 200.7 343 40.5
MCO13G425 Micromonas commoda HOM05D005912 ORTHO05D007329 1.8e-42 177.6 267 41.2
PRCOL_00003732 Prasinoderma coloniale HOM05D005912 ORTHO05D007329 2.3e-40 170.6 275 38.2
Cre12.g493150 Chlamydomonas reinhardtii HOM05D005912 ORTHO05D007329 8.6e-40 168.7 267 37.1
Lj2A933T26 Lonicera japonica HOM05D005912 ORTHO05D007329 4.0e-37 159.8 129 67.4
SEGI_31957 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 8.9e-37 158.7 165 46.7
SGA_v2.0_scaffold132G34543 Striga asiatica HOM05D005912 ORTHO05D007329 8.3e-35 152.1 94 69.1
MSTRG.15589 Avicennia marina HOM05D005912 ORTHO05D007329 5.9e-33 146.0 87 72.4
AagrBONN_evm.TU.Sc2ySwM_340.180 Anthoceros agrestis HOM05D005912 ORTHO05D007329 1.3e-32 144.8 215 41.9
Pp3c1_24560 Physcomitrium patens HOM05D005912 ORTHO05D007329 1.2e-30 138.3 121 52.9
arahy.Tifrunner.gnm1.ann1.SP2XL4 Arachis hypogaea HOM05D005912 ORTHO05D007329 1.8e-29 134.4 126 57.1
AagrBONN_evm.TU.Sc2ySwM_228.1421 Anthoceros agrestis HOM05D005912 ORTHO05D007329 6.6e-24 115.9 160 38.1
Hma1.2p1_4017F.1_g338140 Hydrangea macrophylla HOM05D005912 ORTHO05D007329 4.7e-22 109.8 97 59.8
Lj2P933T24 Lonicera japonica HOM05D005912 ORTHO05D007329 1.2e-20 105.1 53 86.8
PRCOL_00002964 Prasinoderma coloniale HOM05D005912 ORTHO05D007329 4.1e-18 96.7 91 51.6
Lj2A1074G31 Lonicera japonica HOM05D005912 ORTHO05D007329 2.7e-17 94.0 112 50.9
unitig_88.g27770 Utricularia gibba HOM05D005912 ORTHO05D007329 3.5e-17 93.6 104 50.0
Gohir.D03G004450 Gossypium hirsutum HOM05D005912 ORTHO05D007329 3.0e-16 90.5 46 80.4
SEGI_22324 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 5.1e-16 89.7 46 80.4
Peaxi162Scf56132g00003 Petunia axillaris HOM05D005912 ORTHO05D007329 7.3e-15 85.9 46 76.1
FAN28G1872 Fragaria x ananassa HOM05D005912 ORTHO05D007329 3.1e-13 80.5 46 76.1
MD15G1236200 Malus domestica HOM05D005912 ORTHO05D007329 2.0e-12 77.8 46 71.7
MCO11G735 Micromonas commoda HOM05D005912 ORTHO05D007329 2.2e-11 74.3 127 29.1
SEGI_06824 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 5.4e-10 69.7 50 60.0
RcHm_v2.0_Chr4g0418411 Rosa chinensis HOM05D005912 ORTHO05D007329 1.6e-06 58.2 60 51.7
RcHm_v2.0_Chr7g0224811 Rosa chinensis HOM05D005912 ORTHO05D007329 4.7e-06 56.6 60 51.7


User provided reference genes

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