Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031076 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 3.1e-251 871.3 434 100.0
CSS0003869 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 7.1e-240 833.6 475 90.3
vmacro01311 Vaccinium macrocarpon HOM05D005225 ORTHO05D006830 1.4e-208 729.6 474 78.5
Rhsim09G0126000 Rhododendron simsii HOM05D005225 ORTHO05D006830 3.9e-206 721.5 473 77.0
Dinv34052 Davidia involucrata HOM05D005225 ORTHO05D006830 2.4e-203 712.2 472 76.3
RcHm_v2.0_Chr7g0212391 Rosa chinensis HOM05D005225 ORTHO05D006830 6.3e-196 687.6 474 71.3
Cfa008863 Carpinus fangiana HOM05D005225 ORTHO05D006830 2.4e-195 685.6 474 71.5
Potri.008G097400 Populus trichocarpa HOM05D005225 ORTHO05D006830 9.1e-195 683.7 472 71.8
Sabra08G0073600 Salix brachista HOM05D005225 ORTHO05D006830 2.0e-194 682.6 472 71.6
Haze_11886 Corylus avellana HOM05D005225 ORTHO05D006830 5.9e-194 681.0 475 71.2
Cpa.g.sc1.153 Carica papaya HOM05D005225 ORTHO05D006830 1.7e-193 679.5 467 71.5
FvH4_4g10620 Fragaria vesca HOM05D005225 ORTHO05D006830 6.5e-193 677.6 473 70.2
FAN12G0824 Fragaria x ananassa HOM05D005225 ORTHO05D006830 6.5e-193 677.6 473 70.4
Thecc.02G327800 Theobroma cacao HOM05D005225 ORTHO05D006830 7.2e-192 674.1 472 70.8
FAN12G2267 Fragaria x ananassa HOM05D005225 ORTHO05D006830 9.4e-192 673.7 473 70.2
MD16G1281400 Malus domestica HOM05D005225 ORTHO05D006830 2.1e-191 672.5 472 71.2
Ciclev10031260m.g Citrus clementina HOM05D005225 ORTHO05D006830 4.7e-191 671.4 473 70.6
COL.COLO4_27858 Corchorus olitorius HOM05D005225 ORTHO05D006830 4.7e-191 671.4 475 69.3
Atru.chr11.1603 Acer truncatum HOM05D005225 ORTHO05D006830 8.0e-191 670.6 474 70.3
Prupe.1G566200 Prunus persica HOM05D005225 ORTHO05D006830 4.0e-190 668.3 472 69.5
Hma1.2p1_0051F.1_g029440 Hydrangea macrophylla HOM05D005225 ORTHO05D006830 1.2e-189 666.8 473 70.8
Eucgr.F03034 Eucalyptus grandis HOM05D005225 ORTHO05D006830 1.5e-189 666.4 475 70.9
Duzib251G0330 Durio zibethinus HOM05D005225 ORTHO05D006830 5.7e-189 664.5 474 69.2
Cc11_g11810 Coffea canephora HOM05D005225 ORTHO05D006830 1.3e-188 663.3 471 69.4
QL03p073750 Quercus lobata HOM05D005225 ORTHO05D006830 1.3e-188 663.3 474 69.8
QL02p092646 Quercus lobata HOM05D005225 ORTHO05D006830 1.1e-187 660.2 474 69.2
DCAR_004043 Daucus carota HOM05D005225 ORTHO05D006830 1.4e-187 659.8 466 70.8
Lj3P1029T28 Lonicera japonica HOM05D005225 ORTHO05D006830 5.4e-187 657.9 474 69.4
Peaxi162Scf00175g00052 Petunia axillaris HOM05D005225 ORTHO05D006830 1.6e-186 656.4 474 69.0
Manes.10G001000 Manihot esculenta HOM05D005225 ORTHO05D006830 2.7e-186 655.6 471 68.4
Lalb_Chr04g0255551 Lupinus albus HOM05D005225 ORTHO05D006830 1.7e-185 652.9 472 68.9
CANSAT80G1664 Cannabis sativa HOM05D005225 ORTHO05D006830 8.6e-185 650.6 474 66.7
Psat2g131720 Pisum sativum HOM05D005225 ORTHO05D006830 1.5e-184 649.8 474 68.4
CAN.G707.21 Capsicum annuum HOM05D005225 ORTHO05D006830 2.1e-183 646.0 474 67.9
PSO017G1582 Papaver somniferum HOM05D005225 ORTHO05D006830 4.7e-183 644.8 475 68.6
Hund25165 Selenicereus undatus HOM05D005225 ORTHO05D006830 6.1e-183 644.4 473 67.7
arahy.Tifrunner.gnm1.ann1.BYWX90 Arachis hypogaea HOM05D005225 ORTHO05D006830 1.0e-182 643.7 474 67.1
arahy.Tifrunner.gnm1.ann1.W47LMS Arachis hypogaea HOM05D005225 ORTHO05D006830 1.0e-182 643.7 474 67.1
Sopen05g006880 Solanum pennellii HOM05D005225 ORTHO05D006830 3.0e-182 642.1 474 67.9
Ca_05000_v3 Cicer arietinum L. HOM05D005225 ORTHO05D006830 5.2e-182 641.3 474 66.9
Gorai.008G176100 Gossypium raimondii HOM05D005225 ORTHO05D006830 5.2e-182 641.3 475 67.2
arahy.Tifrunner.gnm1.ann1.BAL663 Arachis hypogaea HOM05D005225 ORTHO05D006830 6.8e-182 641.0 474 66.9
arahy.Tifrunner.gnm1.ann1.1IY8V2 Arachis hypogaea HOM05D005225 ORTHO05D006830 8.9e-182 640.6 474 66.7
HanXRQChr12g0375111 Helianthus annuus HOM05D005225 ORTHO05D006830 1.5e-181 639.8 473 67.4
TPR.G23155 Trifolium pratense HOM05D005225 ORTHO05D006830 1.5e-181 639.8 474 67.7
VMungo1215G0332 Vigna mungo HOM05D005225 ORTHO05D006830 1.5e-181 639.8 474 68.1
TPR.G23738 Trifolium pratense HOM05D005225 ORTHO05D006830 2.0e-181 639.4 474 67.7
Glyma.02G120400 Glycine max HOM05D005225 ORTHO05D006830 4.4e-181 638.3 476 67.6
MELO3C020077.2 Cucumis melo HOM05D005225 ORTHO05D006830 7.5e-181 637.5 474 65.8
PGR102G0586 Punica granatum HOM05D005225 ORTHO05D006830 7.5e-181 637.5 473 66.2
TWI75G0045 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 7.5e-181 637.5 473 66.2
Lj2g0003273 Lotus japonicus HOM05D005225 ORTHO05D006830 9.8e-181 637.1 474 66.7
Sed0018680 Sechium edule HOM05D005225 ORTHO05D006830 9.8e-181 637.1 474 65.6
PGSC0003DMG400028362 Solanum tuberosum HOM05D005225 ORTHO05D006830 2.8e-180 635.6 474 67.1
TWI79G0826 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 3.7e-180 635.2 473 65.8
ClCG11G000950 Citrullus lanatus HOM05D005225 ORTHO05D006830 4.9e-180 634.8 469 65.7
AUR62003082 Chenopodium quinoa HOM05D005225 ORTHO05D006830 6.3e-180 634.4 473 66.0
Medtr5g044980 Medicago truncatula HOM05D005225 ORTHO05D006830 6.3e-180 634.4 474 65.6
MBI16_g03095_MAGBIO Magnolia biondii HOM05D005225 ORTHO05D006830 1.1e-179 633.6 474 66.5
CsaV3_5G008630 Cucumis sativus L. HOM05D005225 ORTHO05D006830 1.4e-179 633.3 474 64.8
Ah.03g138790 Amaranthus hybridus HOM05D005225 ORTHO05D006830 2.4e-179 632.5 468 66.9
ECA246G3793 Erigeron canadensis HOM05D005225 ORTHO05D006830 3.5e-178 628.6 473 66.2
Sp7g27800 Schrenkiella parvula HOM05D005225 ORTHO05D006830 7.8e-178 627.5 473 63.4
AT4G30000 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 1.0e-177 627.1 473 63.4
Carub.0007s1065 Capsella rubella HOM05D005225 ORTHO05D006830 1.7e-177 626.3 473 63.2
MSTRG.7736 Avicennia marina HOM05D005225 ORTHO05D006830 5.0e-177 624.8 474 65.8
Thhalv10024845m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 6.6e-177 624.4 473 63.6
AL7G22240 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 8.6e-177 624.0 473 63.2
BraA01t00759Z Brassica rapa HOM05D005225 ORTHO05D006830 1.1e-176 623.6 474 63.1
Sc04g0007480 Simmondsia chinensis HOM05D005225 ORTHO05D006830 1.1e-176 623.6 474 65.6
SalBow2G3373 Salvia bowleyana HOM05D005225 ORTHO05D006830 2.5e-176 622.5 474 64.8
Lsat_1_v5_gn_3_53701 Lactuca sativa HOM05D005225 ORTHO05D006830 7.3e-176 620.9 471 65.4
A01p08120 Brassica napus HOM05D005225 ORTHO05D006830 1.6e-175 619.8 474 62.4
CARHR237920 Cardamine hirsuta HOM05D005225 ORTHO05D006830 2.8e-175 619.0 472 62.9
GSVIVG01012238001 Vitis vinifera HOM05D005225 ORTHO05D006830 8.0e-175 617.5 472 66.7
Migut.L01174 Erythranthe guttata HOM05D005225 ORTHO05D006830 1.0e-174 617.1 473 64.9
HanXRQChr03g0092011 Helianthus annuus HOM05D005225 ORTHO05D006830 6.8e-174 614.4 475 65.9
Lalb_Chr10g0098931 Lupinus albus HOM05D005225 ORTHO05D006830 1.2e-173 613.6 472 66.7
BcaC09g51778 Brassica carinata HOM05D005225 ORTHO05D006830 1.5e-173 613.2 473 62.2
C01p09090 Brassica napus HOM05D005225 ORTHO05D006830 1.5e-173 613.2 473 62.2
BolC1t00900H Brassica oleracea HOM05D005225 ORTHO05D006830 1.5e-173 613.2 473 62.2
Nn8g41224 Nelumbo nucifera HOM05D005225 ORTHO05D006830 1.5e-173 613.2 445 67.4
Aa31LG2G20560 Aethionema arabicum HOM05D005225 ORTHO05D006830 9.8e-173 610.5 475 60.8
CiPaw.06G093200 Carya illinoinensis HOM05D005225 ORTHO05D006830 1.3e-172 610.1 440 68.4
THA.LOC104821999 Tarenaya hassleriana HOM05D005225 ORTHO05D006830 1.1e-171 607.1 468 63.7
FAN17G1346 Fragaria x ananassa HOM05D005225 ORTHO05D006830 5.4e-171 604.7 405 72.6
Nitab4.5_0007734g0040 Nicotiana tabacum HOM05D005225 ORTHO05D006830 1.1e-168 597.0 440 68.2
Nitab4.5_0000231g0060 Nicotiana tabacum HOM05D005225 ORTHO05D006830 2.5e-168 595.9 440 67.3
Aqoxy6G03037 Aquilegia oxysepala HOM05D005225 ORTHO05D006830 2.1e-167 592.8 440 64.5
Thhalv10019460m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 3.1e-166 589.0 466 62.7
Gohir.A12G160100 Gossypium hirsutum HOM05D005225 ORTHO05D006830 3.1e-166 589.0 473 63.0
EL10Ac6g15018 Beta vulgaris HOM05D005225 ORTHO05D006830 2.6e-165 585.9 451 64.7
unitig_22.g6894 Utricularia gibba HOM05D005225 ORTHO05D006830 2.6e-165 585.9 474 60.1
Sp5g24250 Schrenkiella parvula HOM05D005225 ORTHO05D006830 9.2e-163 577.4 467 60.8
Gohir.D12G163500 Gossypium hirsutum HOM05D005225 ORTHO05D006830 1.6e-162 576.6 475 61.7
AT1G69190 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 2.7e-162 575.9 477 61.0
FAN07G1983 Fragaria x ananassa HOM05D005225 ORTHO05D006830 1.0e-161 573.9 385 72.5
TAR629G1144 Trochodendron aralioides HOM05D005225 ORTHO05D006830 1.9e-160 569.7 474 63.3
Oeu055095.2 Olea europaea HOM05D005225 ORTHO05D006830 1.8e-158 563.1 440 64.8
Os07g0618500 Oryza sativa ssp. japonica HOM05D005225 ORTHO05D006830 5.2e-158 561.6 465 59.6
HPP92_017786 Vanilla planifolia HOM05D005225 ORTHO05D006830 1.4e-155 553.5 473 58.1
SEGI_35565 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 9.2e-155 550.8 473 58.1
Solyc05g012090.4 Solanum lycopersicum HOM05D005225 ORTHO05D006830 1.6e-154 550.1 370 72.4
ATR0827G107 Amborella trichopoda HOM05D005225 ORTHO05D006830 4.6e-154 548.5 473 58.4
AL2G28280 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 1.3e-153 547.0 453 58.9
Zm00001eb319990 Zea mays HOM05D005225 ORTHO05D006830 4.3e-152 542.0 472 57.4
Actinidia00572 Actinidia chinensis HOM05D005225 ORTHO05D006830 6.0e-146 521.5 474 61.6
SHI01330 Sapria himalayana HOM05D005225 ORTHO05D006830 1.1e-144 517.3 470 57.7
SGA_v2.0_scaffold85G26791 Striga asiatica HOM05D005225 ORTHO05D006830 5.6e-144 515.0 468 56.2
Aa31sc367G20 Aethionema arabicum HOM05D005225 ORTHO05D006830 4.8e-143 511.9 467 56.1
MD06G1024100 Malus domestica HOM05D005225 ORTHO05D006830 7.6e-141 504.6 440 59.1
AagrBONN_evm.TU.Sc2ySwM_362.716 Anthoceros agrestis HOM05D005225 ORTHO05D006830 2.5e-128 463.0 471 50.5
RcHm_v2.0_Chr2g0139541 Rosa chinensis HOM05D005225 ORTHO05D006830 1.4e-126 457.2 318 71.4
AUR62007898 Chenopodium quinoa HOM05D005225 ORTHO05D006830 4.9e-124 448.7 339 65.8
Nn2g15478 Nelumbo nucifera HOM05D005225 ORTHO05D006830 2.5e-123 446.4 326 66.3
Glyma.01G062200 Glycine max HOM05D005225 ORTHO05D006830 4.2e-123 445.7 345 65.5
Mapoly0021s0079 Marchantia polymorpha HOM05D005225 ORTHO05D006830 4.6e-122 442.2 450 51.1
Pp3c27_4310 Physcomitrium patens HOM05D005225 ORTHO05D006830 8.7e-121 438.0 464 48.9
SEGI_04122 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 5.7e-120 435.3 473 49.5
SGA_v2.0_scaffold45G17115 Striga asiatica HOM05D001733 ORTHO05D001882 1.6e-111 407.1 351 58.1
SMO358G0268 Selaginella moellendorffii HOM05D005225 ORTHO05D006830 5.3e-110 402.1 462 46.8
CDE04G0587 Ceratophyllum demersum HOM05D005225 ORTHO05D006830 6.5e-108 395.2 274 69.7
Phvul.007G262101 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 1.5e-104 384.0 293 66.9
Phvul.001G131450 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 1.3e-103 380.9 293 65.9
CBR_g61480 Chara braunii HOM05D005225 ORTHO05D006830 8.8e-97 358.2 464 43.5
HanXRQChr04g0120931 Helianthus annuus HOM05D005225 ORTHO05D006830 4.1e-94 349.4 250 69.6
MCO11G893 Micromonas commoda HOM05D005225 ORTHO05D006830 7.5e-80 302.0 534 38.2
Cre10.g428550 Chlamydomonas reinhardtii HOM05D005225 ORTHO05D006830 7.5e-72 275.4 607 32.9
PRCOL_00003253 Prasinoderma coloniale HOM05D005225 ORTHO05D006830 2.3e-65 253.8 434 38.5
Cfa024768 Carpinus fangiana HOM05D005225 ORTHO05D124687 7.0e-62 242.3 448 37.1
LjContig00272g0016968 Lotus japonicus HOM05D005225 ORTHO05D006830 1.4e-57 228.0 198 57.1
Nn4g23480 Nelumbo nucifera HOM05D005225 ORTHO05D006830 1.2e-56 224.9 155 69.0
Actinidia16153 Actinidia chinensis HOM05D005225 ORTHO05D006830 1.8e-49 201.1 280 46.1
RcHm_v2.0_Chr2g0139531 Rosa chinensis HOM05D005225 ORTHO05D006830 1.1e-41 175.3 131 67.2
SGA_v2.0_scaffold16G07808 Striga asiatica HOM05D005225 ORTHO05D006830 6.8e-41 172.6 219 44.7
TAR371G0727 Trochodendron aralioides HOM05D005225 ORTHO05D006830 4.1e-38 163.3 208 46.6
Nn4g23481 Nelumbo nucifera HOM05D005225 ORTHO05D006830 1.2e-37 161.8 108 76.9
CARHR062340 Cardamine hirsuta HOM05D005225 ORTHO05D006830 6.0e-21 106.3 69 63.8
QL06p011620 Quercus lobata HOM05D005225 ORTHO05D006830 1.1e-19 102.1 68 76.5
HanXRQChr15g0477151 Helianthus annuus HOM05D005225 ORTHO05D044060 4.3e-19 100.1 92 58.7
Medtr0076s0050 Medicago truncatula HOM05D005225 ORTHO05D265034 4.8e-18 96.7 84 57.1
HanXRQChr04g0120941 Helianthus annuus HOM05D005225 ORTHO05D048239 1.6e-13 81.6 87 48.3
SGA_v2.0_scaffold16G07809 Striga asiatica HOM05D005225 ORTHO05D048239 1.6e-13 81.6 119 38.7
AUR62007899 Chenopodium quinoa HOM05D005225 ORTHO05D044060 2.3e-12 77.8 52 65.4


User provided reference genes

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