Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031071 Camellia sinensis var. sinensis HOM05D008282 ORTHO05D009173 3.8e-39 164.1 68 100.0
FvH4_1g19000 Fragaria vesca HOM05D008282 ORTHO05D009173 5.0e-23 110.5 64 59.4
Actinidia29960 Actinidia chinensis HOM05D008282 ORTHO05D009173 8.0e-21 103.2 63 68.3
MELO3C029307.2 Cucumis melo HOM05D008282 ORTHO05D009173 1.0e-20 102.8 61 68.9
Thecc.01G234600 Theobroma cacao HOM05D008282 ORTHO05D009173 2.3e-20 101.7 59 64.4
Duzib138G1397 Durio zibethinus HOM05D008282 ORTHO05D009173 4.0e-20 100.9 55 72.7
Duzib138G1943 Durio zibethinus HOM05D008282 ORTHO05D009173 6.8e-20 100.1 55 72.7
COL.COLO4_29927 Corchorus olitorius HOM05D008282 ORTHO05D009173 2.6e-19 98.2 60 63.3
Gohir.A02G058203 Gossypium hirsutum HOM05D008282 ORTHO05D009173 3.4e-19 97.8 56 67.9
Gohir.D02G064025 Gossypium hirsutum HOM05D008282 ORTHO05D009173 4.4e-19 97.4 56 67.9
Gohir.D02G064050 Gossypium hirsutum HOM05D008282 ORTHO05D009173 5.7e-19 97.1 56 66.1
Gorai.005G072200 Gossypium raimondii HOM05D008282 ORTHO05D009173 5.7e-19 97.1 56 66.1
Gorai.005G072300 Gossypium raimondii HOM05D008282 ORTHO05D009173 5.7e-19 97.1 56 66.1
Carub.0007s2804 Capsella rubella HOM05D008282 ORTHO05D009173 2.2e-18 95.1 54 61.1
THA.LOC104816929 Tarenaya hassleriana HOM05D008282 ORTHO05D009173 3.7e-18 94.4 56 62.5
Thecc.01G205100 Theobroma cacao HOM05D008282 ORTHO05D009173 3.7e-18 94.4 59 61.0
Gohir.A02G058202 Gossypium hirsutum HOM05D008282 ORTHO05D009173 6.3e-18 93.6 56 66.1
FAN19G2952 Fragaria x ananassa HOM05D008282 ORTHO05D009173 8.3e-18 93.2 49 63.3
Prupe.6G206400 Prunus persica HOM05D008282 ORTHO05D009173 8.3e-18 93.2 57 61.4
Gohir.D02G064075 Gossypium hirsutum HOM05D008282 ORTHO05D009173 1.1e-17 92.8 56 66.1
Gorai.005G072100 Gossypium raimondii HOM05D008282 ORTHO05D009173 3.1e-17 91.3 56 64.3
Gorai.005G072400 Gossypium raimondii HOM05D008282 ORTHO05D009173 3.1e-17 91.3 56 64.3
Oeu020583.1 Olea europaea HOM05D008282 ORTHO05D009173 7.0e-17 90.1 53 66.0
Prupe.6G206000 Prunus persica HOM05D008282 ORTHO05D009173 7.0e-17 90.1 56 58.9
Duzib138G0497 Durio zibethinus HOM05D008282 ORTHO05D009173 1.2e-16 89.4 56 62.5
Solyc07g008375.1 Solanum lycopersicum HOM05D008282 ORTHO05D009173 1.2e-16 89.4 65 53.8
Solyc07g008377.1 Solanum lycopersicum HOM05D008282 ORTHO05D009173 1.2e-16 89.4 65 53.8
Thhalv10026987m.g Eutrema salsugineum HOM05D008282 ORTHO05D009173 2.0e-16 88.6 55 61.8
CsaV3_1G039450 Cucumis sativus L. HOM05D008282 ORTHO05D009173 2.7e-16 88.2 56 64.3
Prupe.6G209700 Prunus persica HOM05D008282 ORTHO05D009173 3.5e-16 87.8 57 59.6
Prupe.6G209800 Prunus persica HOM05D008282 ORTHO05D009173 3.5e-16 87.8 57 59.6
Carub.0007s2805 Capsella rubella HOM05D008282 ORTHO05D009173 4.5e-16 87.4 54 57.4
Prupe.6G205300 Prunus persica HOM05D008282 ORTHO05D009173 7.7e-16 86.7 57 57.9
ClCG03G016530 Citrullus lanatus HOM05D008282 ORTHO05D009173 1.7e-15 85.5 50 68.0
CsaV3_1G039470 Cucumis sativus L. HOM05D008282 ORTHO05D009173 2.2e-15 85.1 56 60.7
CARHR220430 Cardamine hirsuta HOM05D008282 ORTHO05D009173 2.9e-15 84.7 54 53.7
THA.LOC104804768 Tarenaya hassleriana HOM05D008282 ORTHO05D009173 2.9e-15 84.7 57 56.1
Potri.016G130300 Populus trichocarpa HOM05D008282 ORTHO05D009173 8.5e-15 83.2 63 57.1
Carub.0007s2806 Capsella rubella HOM05D008282 ORTHO05D009173 1.5e-14 82.4 54 61.1
AT5G52605 Arabidopsis thaliana HOM05D008282 ORTHO05D009173 1.9e-14 82.0 54 55.6
MD15G1119700 Malus domestica HOM05D008282 ORTHO05D009173 1.9e-14 82.0 58 62.1
Nitab4.5_0002770g0030 Nicotiana tabacum HOM05D008282 ORTHO05D009173 3.2e-14 81.3 53 56.6
AT4G14276 Arabidopsis thaliana HOM05D008282 ORTHO05D009173 7.2e-14 80.1 54 53.7
Potri.013G113550 Populus trichocarpa HOM05D008282 ORTHO05D009173 9.4e-14 79.7 63 55.6
Thecc.05G205200 Theobroma cacao HOM05D008282 ORTHO05D000004 9.4e-14 79.7 64 48.4
Aa31LG9G3100 Aethionema arabicum HOM05D008282 ORTHO05D009173 2.7e-13 78.2 59 55.9
Sopen07g004270 Solanum pennellii HOM05D008282 ORTHO05D009173 2.7e-13 78.2 56 53.6
Potri.013G113600 Populus trichocarpa HOM05D008282 ORTHO05D009173 3.6e-13 77.8 63 54.0
Gorai.005G072000 Gossypium raimondii HOM05D008282 ORTHO05D009173 3.0e-12 74.7 56 57.1
Solyc07g008373.1 Solanum lycopersicum HOM05D008282 ORTHO05D009173 3.0e-12 74.7 56 51.8
Potri.005G074350 Populus trichocarpa HOM05D008282 ORTHO05D009173 7.5e-11 70.1 56 55.4
Gohir.A02G058204 Gossypium hirsutum HOM05D008282 ORTHO05D009173 9.8e-11 69.7 56 55.4
AT5G08315 Arabidopsis thaliana HOM05D008408 ORTHO05D009173 6.3e-10 67.0 64 46.9
C09p68620 Brassica napus HOM05D008408 ORTHO05D009173 7.0e-09 63.5 61 50.8
BolC9t59606H Brassica oleracea HOM05D008408 ORTHO05D009173 7.0e-09 63.5 61 50.8
CARHR216630 Cardamine hirsuta HOM05D008282 ORTHO05D009173 2.0e-08 62.0 45 51.1
AT5G08055 Arabidopsis thaliana HOM05D008408 ORTHO05D009173 3.5e-08 61.2 64 43.8
A10p28360 Brassica napus HOM05D008408 ORTHO05D009173 3.5e-08 61.2 61 49.2
BraA10t44883Z Brassica rapa HOM05D008408 ORTHO05D009173 3.5e-08 61.2 61 49.2
Atru.chr11.1626 Acer truncatum HOM05D008282 ORTHO05D009173 8.6e-07 56.6 37 51.4
Psat7g096320 Pisum sativum HOM05D009110 ORTHO05D011182 4.2e-06 54.3 59 45.8


User provided reference genes

Program Settings