Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 6.1e-307 1056.6 514 100.0
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.6e-302 1042.0 514 98.4
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 1.5e-233 812.8 515 76.5
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 6.5e-232 807.4 523 77.1
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 5.5e-231 804.3 512 77.5
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 5.5e-231 804.3 512 77.5
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 4.6e-230 801.2 512 77.3
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 4.6e-230 801.2 512 77.3
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 1.9e-223 779.2 517 74.1
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 1.2e-217 760.0 526 72.1
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 2.6e-217 758.8 526 71.5
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 1.0e-216 756.9 524 71.9
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 1.2e-214 750.0 516 71.3
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 1.4e-213 746.5 520 71.5
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 3.3e-212 741.9 536 68.7
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 1.3e-211 740.0 522 70.5
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 1.3e-208 729.9 523 68.3
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 9.4e-207 723.8 508 69.3
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 1.2e-206 723.4 525 69.5
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 1.4e-205 719.9 523 68.6
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 3.0e-205 718.8 515 69.5
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 8.8e-205 717.2 499 72.1
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 2.0e-204 716.1 530 67.2
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 2.0e-204 716.1 530 67.2
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 2.2e-203 712.6 547 66.0
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 2.2e-203 712.6 547 66.0
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 3.1e-202 708.8 510 69.6
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 5.3e-202 708.0 512 70.1
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 9.1e-202 707.2 510 68.2
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 9.1e-202 707.2 511 69.5
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 2.0e-201 706.1 518 67.6
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 2.0e-201 706.1 514 67.3
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 2.7e-201 705.7 510 69.2
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 2.2e-200 702.6 512 68.2
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 3.8e-200 701.8 526 66.0
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 5.0e-200 701.4 509 68.0
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 1.9e-199 699.5 511 67.7
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 7.2e-199 697.6 522 68.0
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 9.4e-199 697.2 512 68.4
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 2.1e-198 696.0 527 64.5
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.8e-197 693.0 510 68.8
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 1.8e-197 693.0 518 66.0
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 1.5e-196 689.9 519 64.5
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 5.7e-196 688.0 520 66.0
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 1.3e-195 686.8 533 64.2
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 2.8e-195 685.6 510 67.5
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 1.4e-194 683.3 534 65.9
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 1.8e-194 682.9 509 67.8
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 1.8e-194 682.9 509 68.6
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 5.4e-194 681.4 515 64.9
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 7.0e-194 681.0 512 66.2
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 2.0e-193 679.5 520 65.6
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 3.5e-193 678.7 522 64.9
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 2.9e-192 675.6 528 64.4
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 6.6e-192 674.5 516 66.7
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 8.6e-192 674.1 517 66.0
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 2.8e-190 669.1 518 66.4
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 3.6e-190 668.7 512 66.2
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 1.4e-189 666.8 517 65.0
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 1.8e-189 666.4 518 64.1
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 5.2e-189 664.8 511 64.6
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 1.2e-188 663.7 524 64.1
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 2.6e-188 662.5 518 63.7
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 4.4e-188 661.8 518 65.4
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 4.4e-188 661.8 520 64.8
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 5.7e-188 661.4 524 64.7
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 8.3e-187 657.5 531 63.8
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 2.4e-186 656.0 545 60.6
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 2.4e-186 656.0 517 62.5
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 3.2e-186 655.6 515 63.1
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 5.4e-186 654.8 518 63.3
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 5.4e-186 654.8 518 63.9
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 3.5e-185 652.1 519 64.2
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 8.6e-184 647.5 525 61.3
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 1.5e-183 646.7 519 62.4
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 1.5e-183 646.7 508 63.8
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 2.5e-183 646.0 510 64.9
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 3.3e-183 645.6 545 61.3
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 1.0e-181 640.6 519 63.4
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 1.4e-181 640.2 520 61.9
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 2.6e-180 636.0 522 61.7
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 3.4e-180 635.6 526 61.8
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 7.5e-180 634.4 539 61.0
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 2.9e-179 632.5 538 60.4
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 2.0e-177 626.3 531 60.5
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 2.0e-177 626.3 533 61.0
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 2.7e-177 625.9 529 60.7
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 1.0e-176 624.0 529 60.7
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 1.0e-176 624.0 543 59.7
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 1.3e-176 623.6 529 60.5
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 1.3e-176 623.6 536 60.6
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 3.0e-176 622.5 539 59.6
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 3.0e-176 622.5 517 61.3
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 1.5e-175 620.2 514 60.5
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 5.6e-175 618.2 446 69.5
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 2.3e-173 612.8 480 61.9
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 3.1e-173 612.5 530 59.1
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 5.2e-173 611.7 513 61.0
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 8.9e-173 610.9 509 63.3
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 6.4e-171 604.7 404 70.0
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 2.4e-170 602.8 453 64.7
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 4.1e-170 602.1 532 57.7
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 6.0e-169 598.2 541 57.9
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 4.3e-167 592.0 477 58.5
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 3.1e-165 585.9 522 58.8
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 5.2e-165 585.1 455 63.5
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 1.2e-164 583.9 512 56.6
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 6.0e-161 571.6 393 69.7
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 8.1e-158 561.2 470 61.7
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 4.4e-156 555.4 436 60.3
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 4.3e-151 538.9 449 58.8
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 1.8e-149 533.5 383 67.1
GSVIVG01037759001 Vitis vinifera HOM05D004336 ORTHO05D005367 3.9e-144 515.8 311 78.5
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 1.1e-141 507.7 424 60.6
Cc05_g14530 Coffea canephora HOM05D004336 ORTHO05D005367 7.6e-140 501.5 311 75.9
QL08p008529 Quercus lobata HOM05D004336 ORTHO05D005367 6.4e-139 498.4 326 73.0
RcHm_v2.0_Chr5g0041921 Rosa chinensis HOM05D004336 ORTHO05D005367 1.9e-138 496.9 303 78.5
CDE07G1634 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 1.2e-129 467.6 311 69.5
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 4.5e-124 449.1 468 46.4
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 3.5e-121 439.5 383 59.0
Ah.06g181060 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.7e-115 420.6 288 68.4
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 5.1e-112 409.1 517 42.7
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 5.7e-111 405.6 519 41.4
Oeu019622.1 Olea europaea HOM05D004336 ORTHO05D005367 2.2e-107 393.7 265 73.2
Sabra16G0237900 Salix brachista HOM05D004336 ORTHO05D005367 1.8e-104 384.0 241 77.6
QL04p097747 Quercus lobata HOM05D004336 ORTHO05D005367 1.4e-101 374.4 238 76.1
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 6.5e-91 339.0 526 44.3
RcHm_v2.0_Chr5g0080011 Rosa chinensis HOM05D004336 ORTHO05D005367 3.7e-86 323.2 198 77.8
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 3.2e-82 310.1 341 51.0
FvH4_3g12320 Fragaria vesca HOM05D004336 ORTHO05D005367 9.4e-82 308.5 200 72.5
MD11G1206800 Malus domestica HOM05D004336 ORTHO05D005367 9.8e-79 298.5 238 60.1
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 4.9e-78 296.2 320 50.0
MD11G1206700 Malus domestica HOM05D004336 ORTHO05D005367 1.2e-68 265.0 166 78.3
BcaB01g04318 Brassica carinata HOM05D004336 ORTHO05D005367 5.0e-67 259.6 270 53.3
BolC9t57481H Brassica oleracea HOM05D004336 ORTHO05D005367 1.2e-52 211.8 195 57.9
C09p46150 Brassica napus HOM05D004336 ORTHO05D005367 3.5e-52 210.3 195 57.4
C09p46160 Brassica napus HOM05D004336 ORTHO05D005367 3.5e-52 210.3 157 68.8
QL08p008521 Quercus lobata HOM05D004336 ORTHO05D005367 5.2e-48 196.4 218 51.4
A04p06990 Brassica napus HOM05D004336 ORTHO05D005367 2.6e-47 194.1 129 66.7
BraA04t16398Z Brassica rapa HOM05D004336 ORTHO05D005367 2.6e-47 194.1 129 66.7
A03p66870 Brassica napus HOM05D004336 ORTHO05D005367 3.4e-47 193.7 144 61.8
AagrBONN_evm.TU.Sc2ySwM_228.1049 Anthoceros agrestis HOM05D004336 ORTHO05D005367 2.2e-46 191.0 189 50.3
Eucgr.I00174 Eucalyptus grandis HOM05D004336 ORTHO05D005367 7.8e-44 182.6 109 81.7
MSTRG.14468 Avicennia marina HOM05D004336 ORTHO05D005367 5.1e-43 179.9 175 53.7
CBR_g22021 Chara braunii HOM05D000019 ORTHO05D000048 3.1e-40 170.6 377 27.9
Ah.06g181050 Amaranthus hybridus HOM05D004336 ORTHO05D005367 3.8e-38 163.7 168 52.4
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 6.0e-36 156.4 106 64.2
SHI26544 Sapria himalayana HOM05D004336 ORTHO05D005367 3.0e-35 154.1 165 49.1
SHI40288 Sapria himalayana HOM05D004336 ORTHO05D005367 5.6e-34 149.8 272 37.1
SHI48138 Sapria himalayana HOM05D004336 ORTHO05D005367 3.1e-32 144.1 269 37.9
CDE07G0680 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 9.0e-32 142.5 181 44.8
SEGI_14116 Sequoiadendron giganteum HOM05D004336 ORTHO05D005367 1.2e-31 142.1 226 40.3
SHI22211 Sapria himalayana HOM05D004336 ORTHO05D005367 7.6e-31 139.4 270 35.6
TAR627G0477 Trochodendron aralioides HOM05D000054 ORTHO05D000171 3.5e-28 130.6 98 67.3
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 1.3e-27 128.6 90 62.2
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 1.3e-27 128.6 90 62.2
BcaB05g23098 Brassica carinata HOM05D004336 ORTHO05D005367 2.8e-25 120.9 85 63.5
AL8G29720 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 9.0e-24 115.9 95 60.0
RcHm_v2.0_Chr5g0079391 Rosa chinensis HOM05D004336 ORTHO05D005367 3.8e-22 110.5 101 53.5
BcaB01g04317 Brassica carinata HOM05D004336 ORTHO05D005367 4.8e-17 93.6 74 62.2
HanXRQChr04g0109771 Helianthus annuus HOM05D004336 ORTHO05D005367 8.1e-17 92.8 88 51.1
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 4.0e-16 90.5 59 67.8
AagrBONN_evm.TU.Sc2ySwM_228.1050 Anthoceros agrestis HOM05D004336 ORTHO05D005367 8.2e-09 66.2 166 28.3
TAR612G0001 Trochodendron aralioides HOM05D000054 ORTHO05D000171 5.9e-07 60.1 34 88.2
Eucgr.F00781 Eucalyptus grandis HOM05D004336 ORTHO05D192954 1.7e-06 58.5 50 62.0


User provided reference genes

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