Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031031 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 8.0e-163 577.0 288 100.0
CSS0048138 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 6.2e-131 471.1 326 77.3
CSS0037064 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 1.0e-117 427.2 326 69.6
Rhsim07G0198900 Rhododendron simsii HOM05D003898 ORTHO05D004642 3.1e-114 415.6 333 67.9
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 7.6e-113 411.0 328 67.4
vmacro04776 Vaccinium macrocarpon HOM05D003898 ORTHO05D004642 8.4e-112 407.5 330 67.3
Dinv13069 Davidia involucrata HOM05D003898 ORTHO05D004642 2.4e-103 379.4 328 64.0
CiPaw.06G023700 Carya illinoinensis HOM05D003898 ORTHO05D004642 3.0e-101 372.5 322 62.1
QL12p035494 Quercus lobata HOM05D003898 ORTHO05D004642 3.6e-99 365.5 324 59.9
Prupe.1G507900 Prunus persica HOM05D003898 ORTHO05D004642 1.8e-98 363.2 324 59.6
RcHm_v2.0_Chr7g0240421 Rosa chinensis HOM05D003898 ORTHO05D004642 4.0e-98 362.1 324 59.0
TAR625G0437 Trochodendron aralioides HOM05D003898 ORTHO05D004642 1.2e-97 360.5 323 59.8
FvH4_5g38420 Fragaria vesca HOM05D003898 ORTHO05D004642 2.0e-97 359.8 324 58.6
FvH4_7g08221 Fragaria vesca HOM05D003898 ORTHO05D004642 4.5e-97 358.6 273 66.7
CiPaw.05G230800 Carya illinoinensis HOM05D003898 ORTHO05D004642 1.3e-96 357.1 324 59.6
Lj4C109T16 Lonicera japonica HOM05D003898 ORTHO05D004642 1.3e-96 357.1 351 56.7
Duzib093G1469 Durio zibethinus HOM05D003898 ORTHO05D004642 6.4e-96 354.8 313 60.4
RcHm_v2.0_Chr1g0340891 Rosa chinensis HOM05D003898 ORTHO05D004642 6.4e-96 354.8 324 58.0
Aqoxy2G00480 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 8.4e-96 354.4 325 56.6
GSVIVG01008958001 Vitis vinifera HOM05D003898 ORTHO05D004642 4.2e-95 352.1 274 66.1
DCAR_028260 Daucus carota HOM05D003898 ORTHO05D004642 1.2e-94 350.5 314 59.9
Thecc.08G115200 Theobroma cacao HOM05D003898 ORTHO05D004642 1.2e-94 350.5 312 59.0
Manes.02G157700 Manihot esculenta HOM05D003898 ORTHO05D004642 2.1e-94 349.7 278 64.4
Potri.002G090500 Populus trichocarpa HOM05D003898 ORTHO05D004642 2.1e-94 349.7 319 58.9
MD08G1174000 Malus domestica HOM05D003898 ORTHO05D004642 3.5e-94 349.0 324 58.3
Nitab4.5_0000425g0260 Nicotiana tabacum HOM05D003898 ORTHO05D004642 3.5e-94 349.0 325 57.8
Solyc12g056840.2 Solanum lycopersicum HOM05D003898 ORTHO05D004642 3.5e-94 349.0 308 60.1
TWI12G0005 Tripterygium wilfordii HOM05D003898 ORTHO05D004642 1.0e-93 347.4 320 57.8
Gorai.002G220000 Gossypium raimondii HOM05D003898 ORTHO05D004642 1.3e-93 347.1 312 59.9
MSTRG.24959 Avicennia marina HOM05D003898 ORTHO05D004642 1.8e-93 346.7 320 58.1
Gohir.D01G182400 Gossypium hirsutum HOM05D003898 ORTHO05D004642 2.3e-93 346.3 310 60.0
Peaxi162Scf00160g01643 Petunia axillaris HOM05D003898 ORTHO05D004642 2.3e-93 346.3 321 58.3
Sopen12g029520 Solanum pennellii HOM05D003898 ORTHO05D004642 2.3e-93 346.3 303 60.4
PGSC0003DMG401016958 Solanum tuberosum HOM05D003898 ORTHO05D004642 1.5e-92 343.6 321 58.6
HanXRQChr01g0001161 Helianthus annuus HOM05D003898 ORTHO05D004642 1.9e-92 343.2 324 57.7
Cpa.g.sc49.114 Carica papaya HOM05D003898 ORTHO05D004642 2.5e-92 342.8 327 55.0
Potri.005G170600 Populus trichocarpa HOM05D003898 ORTHO05D004642 2.5e-92 342.8 318 59.4
SGA_v2.0_scaffold11G05890 Striga asiatica HOM05D003898 ORTHO05D004642 4.3e-92 342.0 320 58.1
Ca_02530_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 7.4e-92 341.3 323 57.3
Glyma.04G254600 Glycine max HOM05D003898 ORTHO05D004642 9.6e-92 340.9 319 58.6
CAN.G617.2 Capsicum annuum HOM05D003898 ORTHO05D004642 1.3e-91 340.5 331 54.4
Gohir.A01G187300 Gossypium hirsutum HOM05D003898 ORTHO05D004642 1.3e-91 340.5 309 58.9
Sc16g0001430 Simmondsia chinensis HOM05D003898 ORTHO05D004642 1.6e-91 340.1 326 56.1
EL10Ac6g15432 Beta vulgaris HOM05D003898 ORTHO05D004642 2.1e-91 339.7 319 56.1
AUR62019012 Chenopodium quinoa HOM05D003898 ORTHO05D004642 2.8e-91 339.3 320 56.6
COL.COLO4_16517 Corchorus olitorius HOM05D003898 ORTHO05D004642 2.8e-91 339.3 313 58.1
ECA246G0783 Erigeron canadensis HOM05D003898 ORTHO05D004642 6.2e-91 338.2 319 56.7
CDE10G0849 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 1.1e-90 337.4 273 62.6
HanXRQChr05g0162311 Helianthus annuus HOM05D003898 ORTHO05D004642 1.8e-90 336.7 273 63.7
ClCG08G010840 Citrullus lanatus HOM05D003898 ORTHO05D004642 2.4e-90 336.3 329 55.0
FAN13G1941 Fragaria x ananassa HOM05D003898 ORTHO05D004642 2.4e-90 336.3 351 53.8
Glyma.06G107500 Glycine max HOM05D003898 ORTHO05D004642 2.4e-90 336.3 313 57.8
TPR.G26798 Trifolium pratense HOM05D003898 ORTHO05D004642 4.0e-90 335.5 323 57.0
VMungo1309G1855 Vigna mungo HOM05D003898 ORTHO05D004642 4.0e-90 335.5 273 63.0
RcHm_v2.0_Chr1g0340911 Rosa chinensis HOM05D003898 ORTHO05D004642 5.3e-90 335.1 262 66.0
PSO210G6710 Papaver somniferum HOM05D003898 ORTHO05D004642 9.0e-90 334.3 322 55.9
Phvul.009G026700 Phaseolus vulgaris HOM05D003898 ORTHO05D004642 9.0e-90 334.3 321 56.1
Sabra02G0071500 Salix brachista HOM05D003898 ORTHO05D004642 1.2e-89 334.0 332 56.3
Sopen04g028670 Solanum pennellii HOM05D003898 ORTHO05D004642 1.2e-89 334.0 326 54.3
Psat5g107440 Pisum sativum HOM05D003898 ORTHO05D004642 1.5e-89 333.6 321 55.8
AUR62027853 Chenopodium quinoa HOM05D003898 ORTHO05D004642 2.6e-89 332.8 319 55.8
Ciclev10005436m.g Citrus clementina HOM05D003898 ORTHO05D004642 2.6e-89 332.8 257 66.1
PSO447G0107 Papaver somniferum HOM05D003898 ORTHO05D004642 7.6e-89 331.3 322 55.3
PGR044G1262 Punica granatum HOM05D003898 ORTHO05D004642 1.3e-88 330.5 324 55.6
Lsat_1_v5_gn_9_70200 Lactuca sativa HOM05D003898 ORTHO05D004642 2.2e-88 329.7 303 58.7
Medtr4g112080 Medicago truncatula HOM05D003898 ORTHO05D004642 2.2e-88 329.7 318 56.0
FAN08G2468 Fragaria x ananassa HOM05D003898 ORTHO05D004642 2.9e-88 329.3 340 54.4
MELO3C011378.2 Cucumis melo HOM05D003898 ORTHO05D004642 8.4e-88 327.8 263 63.9
CsaV3_6G035700 Cucumis sativus L. HOM05D003898 ORTHO05D004642 1.4e-87 327.0 263 63.5
Lj1g0002951 Lotus japonicus HOM05D003898 ORTHO05D004642 1.9e-87 326.6 323 56.0
Lalb_Chr11g0065591 Lupinus albus HOM05D003898 ORTHO05D004642 2.5e-87 326.2 273 62.3
Nitab4.5_0006745g0040 Nicotiana tabacum HOM05D003898 ORTHO05D004642 2.5e-87 326.2 394 49.2
Lalb_Chr08g0241771 Lupinus albus HOM05D003898 ORTHO05D004642 3.2e-87 325.9 273 61.9
TAR381G1034 Trochodendron aralioides HOM05D003898 ORTHO05D004642 1.6e-86 323.6 273 61.9
Haze_00543 Corylus avellana HOM05D003898 ORTHO05D004642 2.1e-86 323.2 345 52.8
Oeu038191.1 Olea europaea HOM05D003898 ORTHO05D004642 2.7e-86 322.8 277 61.7
TPR.G32957 Trifolium pratense HOM05D003898 ORTHO05D004642 2.7e-86 322.8 323 55.1
Sed0026073 Sechium edule HOM05D003898 ORTHO05D004642 3.5e-86 322.4 314 55.4
Medtr3g073550 Medicago truncatula HOM05D003898 ORTHO05D004642 4.6e-86 322.0 319 54.5
Migut.C00215 Erythranthe guttata HOM05D003898 ORTHO05D004642 3.0e-85 319.3 315 55.9
THA.LOC104813137 Tarenaya hassleriana HOM05D003898 ORTHO05D004642 5.1e-85 318.5 289 58.8
CANSAT25G0948 Cannabis sativa HOM05D003898 ORTHO05D004642 6.7e-85 318.2 325 54.2
arahy.Tifrunner.gnm1.ann1.K1QIEY Arachis hypogaea HOM05D003898 ORTHO05D004642 4.3e-84 315.5 364 50.3
Cfa015947 Carpinus fangiana HOM05D003898 ORTHO05D004642 9.6e-84 314.3 269 61.3
CAN.G47.19 Capsicum annuum HOM05D003898 ORTHO05D004642 1.6e-83 313.5 271 62.0
FvH4_5g38402 Fragaria vesca HOM05D003898 ORTHO05D004642 1.6e-83 313.5 251 62.5
Sp6g40350 Schrenkiella parvula HOM05D003898 ORTHO05D004642 2.1e-83 313.2 255 61.6
Thhalv10014147m.g Eutrema salsugineum HOM05D003898 ORTHO05D004642 2.8e-83 312.8 254 61.4
Solyc04g072480.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 2.8e-83 312.8 356 49.2
BcaNung04450 Brassica carinata HOM05D003898 ORTHO05D004642 1.4e-82 310.5 253 60.9
Cc10_g06070 Coffea canephora HOM05D003898 ORTHO05D004642 1.8e-82 310.1 268 61.2
Nn1g05207 Nelumbo nucifera HOM05D003898 ORTHO05D004642 1.8e-82 310.1 247 63.2
Os02g0575200 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 2.4e-82 309.7 259 60.2
CARHR012640 Cardamine hirsuta HOM05D003898 ORTHO05D004642 4.1e-82 308.9 255 60.8
AL1G23670 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 6.9e-82 308.1 309 52.8
Carub.0001s1201 Capsella rubella HOM05D003898 ORTHO05D004642 1.2e-81 307.4 256 59.8
Lsat_1_v5_gn_6_68860 Lactuca sativa HOM05D003898 ORTHO05D004642 2.0e-81 306.6 271 60.5
BolC9t60175H Brassica oleracea HOM05D003898 ORTHO05D004642 4.5e-81 305.4 253 60.1
AT1G12350 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 7.6e-81 304.7 306 53.3
FAN01G1002 Fragaria x ananassa HOM05D000001 ORTHO05D000003 7.6e-81 304.7 322 53.4
A10p33510 Brassica napus HOM05D003898 ORTHO05D004642 1.3e-80 303.9 254 60.2
HPP92_006004 Vanilla planifolia HOM05D003898 ORTHO05D004642 2.9e-80 302.8 273 58.6
C09p74420 Brassica napus HOM05D003898 ORTHO05D004642 5.0e-80 302.0 254 59.8
Zm00001eb414730 Zea mays HOM05D003898 ORTHO05D004642 1.9e-79 300.1 253 61.3
arahy.Tifrunner.gnm1.ann1.HG05DD Arachis hypogaea HOM05D003898 ORTHO05D004642 3.2e-79 299.3 286 55.9
Aa31LG9G14440 Aethionema arabicum HOM05D003898 ORTHO05D004642 1.6e-78 297.0 242 62.4
Nitab4.5_0001307g0170 Nicotiana tabacum HOM05D003898 ORTHO05D004642 1.6e-78 297.0 313 51.8
arahy.Tifrunner.gnm1.ann1.PF76WK Arachis hypogaea HOM05D003898 ORTHO05D004642 2.1e-78 296.6 268 58.6
BraA02t04709Z Brassica rapa HOM05D003898 ORTHO05D004642 4.6e-78 295.4 263 57.8
Zm00001eb182920 Zea mays HOM05D003898 ORTHO05D004642 1.0e-77 294.3 259 57.5
BraA10t45381Z Brassica rapa HOM05D003898 ORTHO05D004642 3.0e-77 292.7 280 55.0
CANSAT01G0632 Cannabis sativa HOM05D003898 ORTHO05D004642 1.5e-76 290.4 306 53.9
arahy.Tifrunner.gnm1.ann1.Z23D3B Arachis hypogaea HOM05D003898 ORTHO05D004642 4.3e-76 288.9 277 56.7
Os08g0176100 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 4.3e-76 288.9 257 58.8
C02p00370 Brassica napus HOM05D003898 ORTHO05D004642 7.4e-76 288.1 257 57.2
SEGI_30417 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 1.3e-75 287.3 259 57.9
BcaNung06026 Brassica carinata HOM05D003898 ORTHO05D004642 4.1e-74 282.3 258 57.0
Pp3c11_3000 Physcomitrium patens HOM05D003898 ORTHO05D004642 2.2e-72 276.6 255 54.1
Solyc10g011840.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 3.8e-72 275.8 327 48.9
Mapoly0004s0284 Marchantia polymorpha HOM05D003898 ORTHO05D004642 8.5e-72 274.6 264 53.0
SalBow7G2097 Salvia bowleyana HOM05D003898 ORTHO05D004642 1.9e-71 273.5 328 47.6
FAN06G3434 Fragaria x ananassa HOM05D000001 ORTHO05D000003 9.4e-71 271.2 315 48.6
MD15G1360400 Malus domestica HOM05D003898 ORTHO05D004642 1.9e-63 246.9 229 57.6
Duzib116G0208 Durio zibethinus HOM05D003898 ORTHO05D004642 5.5e-63 245.4 313 47.0
AL6G11300 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 8.8e-61 238.0 198 59.6
ATR0564G227 Amborella trichopoda HOM05D003898 ORTHO05D004642 9.1e-58 228.0 182 61.5
Dinv44720 Davidia involucrata HOM05D003898 ORTHO05D004642 1.5e-55 220.7 178 66.3
SalBow1G7967 Salvia bowleyana HOM05D003898 ORTHO05D004642 2.5e-55 219.9 306 43.5
ClCG08G002640 Citrullus lanatus HOM05D003898 ORTHO05D004642 4.0e-53 212.6 461 35.1
AagrBONN_evm.TU.Sc2ySwM_344.1574 Anthoceros agrestis HOM05D003898 ORTHO05D004642 2.4e-50 203.4 197 52.8
CDE10G0276 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 1.2e-49 201.1 153 63.4
Nitab4.5_0000553g0060 Nicotiana tabacum HOM05D003898 ORTHO05D004642 1.2e-49 201.1 245 47.8
SMO137G0130 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 1.2e-49 201.1 258 46.9
DCAR_027594 Daucus carota HOM05D003898 ORTHO05D004642 2.7e-46 189.9 221 50.2
PRCOL_00003493 Prasinoderma coloniale HOM05D003898 ORTHO05D004642 2.7e-46 189.9 292 38.4
FAN04G1035 Fragaria x ananassa HOM05D003898 ORTHO05D004642 2.0e-44 183.7 211 50.7
PGSC0003DMG400027542 Solanum tuberosum HOM05D003898 ORTHO05D004642 3.4e-44 183.0 188 52.7
Atru.chr13.1300 Acer truncatum HOM05D003898 ORTHO05D004642 1.7e-43 180.6 173 57.2
Cre01.g048050 Chlamydomonas reinhardtii HOM05D003898 ORTHO05D004642 4.8e-43 179.1 295 38.3
SMO137G0020 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 1.1e-39 167.9 220 48.2
Atru.chr13.1301 Acer truncatum HOM05D003898 ORTHO05D004642 4.2e-39 166.0 129 62.0
AT5G02080 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 2.1e-38 163.7 136 60.3
Sopen10g005660 Solanum pennellii HOM05D003898 ORTHO05D004642 3.0e-37 159.8 178 47.2
Psat4g046560 Pisum sativum HOM05D003898 ORTHO05D011365 6.8e-37 158.7 169 53.3
SMO137G0337 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 6.8e-37 158.7 204 44.6
Eucgr.F04382 Eucalyptus grandis HOM05D003898 ORTHO05D004642 7.5e-36 155.2 151 56.3
BolC2t06037H Brassica oleracea HOM05D003898 ORTHO05D004642 1.1e-34 151.4 121 62.0
Atru.chr4.493 Acer truncatum HOM05D003898 ORTHO05D004642 4.1e-34 149.4 113 62.8
MCO09G707 Micromonas commoda HOM05D003898 ORTHO05D004642 7.0e-34 148.7 242 37.2
Atru.chr1.2069 Acer truncatum HOM05D003898 ORTHO05D004642 1.6e-33 147.5 112 62.5
Ca_25770_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 8.6e-32 141.7 165 50.3
CBR_g9000 Chara braunii HOM05D003898 ORTHO05D004642 8.0e-30 135.2 182 39.6
FAN18G1940 Fragaria x ananassa HOM05D003898 ORTHO05D004642 8.0e-30 135.2 196 42.3
Lj4C710T9 Lonicera japonica HOM05D003898 ORTHO05D004642 1.8e-29 134.0 140 53.6
Cfa024377 Carpinus fangiana HOM05D003898 ORTHO05D004642 1.3e-27 127.9 293 34.8
SEGI_10597 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 8.3e-27 125.2 101 62.4
unitig_32.g11143 Utricularia gibba HOM05D003898 ORTHO05D004642 2.4e-26 123.6 130 50.8
Duzib041G0680 Durio zibethinus HOM05D003898 ORTHO05D004642 2.7e-25 120.2 104 59.6
arahy.Tifrunner.gnm1.ann1.Z5SK82 Arachis hypogaea HOM05D003898 ORTHO05D004642 1.0e-24 118.2 176 42.0
unitig_32.g11144 Utricularia gibba HOM05D003898 ORTHO05D004642 2.6e-20 103.6 113 54.9
arahy.Tifrunner.gnm1.ann1.N7W281 Arachis hypogaea HOM05D003898 ORTHO05D004642 2.2e-19 100.5 134 45.5
Aqoxy480s002 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 1.1e-18 98.2 129 42.6
CBR_g9001 Chara braunii HOM05D003898 ORTHO05D004642 1.1e-15 88.2 67 61.2
arahy.Tifrunner.gnm1.ann1.9J7JQ6 Arachis hypogaea HOM05D003898 ORTHO05D004642 9.8e-12 75.1 47 70.2
Aqoxy5G01116 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 3.2e-10 70.1 45 73.3
Peaxi162Scf00756g00110 Petunia axillaris HOM05D003898 ORTHO05D004642 6.0e-09 65.9 83 43.4
arahy.Tifrunner.gnm1.ann1.KW4E90 Arachis hypogaea HOM05D003898 ORTHO05D004642 1.5e-07 61.2 37 67.6
Atru.chr5.2810 Acer truncatum HOM05D003898 ORTHO05D004642 1.2e-06 58.2 48 56.2


User provided reference genes

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