Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031020 Camellia sinensis var. sinensis HOM05D005940 ORTHO05D007027 5.6e-104 380.9 192 100.0
Dinv31364 Davidia involucrata HOM05D005940 ORTHO05D007027 2.2e-68 262.7 191 72.3
Rhsim09G0154600 Rhododendron simsii HOM05D005940 ORTHO05D007027 1.0e-65 253.8 190 68.9
Cc09_g02600 Coffea canephora HOM05D005940 ORTHO05D007027 6.5e-60 234.6 188 62.8
Hma1.2p1_0192F.1_g083550 Hydrangea macrophylla HOM05D005940 ORTHO05D007027 8.5e-60 234.2 200 66.0
Oeu055049.1 Olea europaea HOM05D005940 ORTHO05D007027 1.4e-59 233.4 190 64.2
Nitab4.5_0000061g0280 Nicotiana tabacum HOM05D005940 ORTHO05D007027 7.2e-59 231.1 190 63.7
Peaxi162Scf00208g00211 Petunia axillaris HOM05D005940 ORTHO05D007027 2.7e-58 229.2 190 61.1
DCAR_019137 Daucus carota HOM05D005940 ORTHO05D007027 3.6e-58 228.8 191 61.8
Atru.chr12.628 Acer truncatum HOM05D005940 ORTHO05D007027 6.1e-58 228.0 187 62.6
Duzib114G0016 Durio zibethinus HOM05D005940 ORTHO05D007027 7.9e-58 227.6 193 60.6
TAR623G0325 Trochodendron aralioides HOM05D005940 ORTHO05D007027 7.9e-58 227.6 191 63.9
Cfa001588 Carpinus fangiana HOM05D005940 ORTHO05D007027 3.0e-57 225.7 191 60.7
Haze_16942 Corylus avellana HOM05D005940 ORTHO05D007027 3.9e-57 225.3 191 61.3
Thecc.10G067000 Theobroma cacao HOM05D005940 ORTHO05D007027 3.9e-57 225.3 193 60.1
GSVIVG01016348001 Vitis vinifera HOM05D005940 ORTHO05D007027 3.9e-57 225.3 190 62.1
TWI38G0416 Tripterygium wilfordii HOM05D005940 ORTHO05D007027 6.7e-57 224.6 191 63.4
CANSAT25G0128 Cannabis sativa HOM05D005940 ORTHO05D007027 8.8e-57 224.2 196 59.7
Nn2g10645 Nelumbo nucifera HOM05D005940 ORTHO05D007027 1.1e-56 223.8 191 61.8
Gorai.012G093100 Gossypium raimondii HOM05D005940 ORTHO05D007027 7.4e-56 221.1 196 55.1
Cpa.g.sc1.266 Carica papaya HOM05D005940 ORTHO05D007027 2.8e-55 219.2 195 63.1
Migut.F01794 Erythranthe guttata HOM05D005940 ORTHO05D007027 3.7e-55 218.8 189 59.3
MD01G1112500 Malus domestica HOM05D005940 ORTHO05D007027 3.7e-55 218.8 189 61.9
FAN10G2498 Fragaria x ananassa HOM05D005940 ORTHO05D007027 8.2e-55 217.6 187 60.4
Gohir.A05G343900 Gossypium hirsutum HOM05D005940 ORTHO05D007027 8.2e-55 217.6 196 54.1
Solyc04g049890.4 Solanum lycopersicum HOM05D005940 ORTHO05D007027 8.2e-55 217.6 190 59.5
QL08p056963 Quercus lobata HOM05D005940 ORTHO05D007027 1.1e-54 217.2 194 61.3
ECA232G2986 Erigeron canadensis HOM05D005940 ORTHO05D007027 1.4e-54 216.9 191 58.6
Sopen04g020430 Solanum pennellii HOM05D005940 ORTHO05D007027 1.4e-54 216.9 190 58.9
Manes.10G041400 Manihot esculenta HOM05D005940 ORTHO05D007027 1.8e-54 216.5 193 60.1
Gohir.D04G082400 Gossypium hirsutum HOM05D005940 ORTHO05D007027 2.4e-54 216.1 196 55.1
Lsat_1_v5_gn_1_128021 Lactuca sativa HOM05D005940 ORTHO05D007027 4.1e-54 215.3 191 59.2
ClCG02G013840 Citrullus lanatus HOM05D005940 ORTHO05D007027 9.1e-54 214.2 192 59.4
Prupe.2G219400 Prunus persica HOM05D005940 ORTHO05D007027 9.1e-54 214.2 192 59.4
Sed0018989 Sechium edule HOM05D005940 ORTHO05D007027 1.5e-53 213.4 192 57.8
Ciclev10033357m.g Citrus clementina HOM05D005940 ORTHO05D007027 2.6e-53 212.6 195 57.9
FvH4_7g20280 Fragaria vesca HOM05D005940 ORTHO05D007027 3.4e-53 212.2 187 59.4
PGSC0003DMG400010575 Solanum tuberosum HOM05D005940 ORTHO05D007027 4.5e-53 211.8 190 57.4
Prupe.2G216400 Prunus persica HOM05D005940 ORTHO05D007027 5.9e-53 211.5 191 58.1
FAN06G4195 Fragaria x ananassa HOM05D005940 ORTHO05D007027 1.7e-52 209.9 187 58.8
RcHm_v2.0_Chr1g0364231 Rosa chinensis HOM05D005940 ORTHO05D007027 1.4e-51 206.8 187 57.8
SGA_v2.0_scaffold122G33246 Striga asiatica HOM05D005940 ORTHO05D007027 1.4e-51 206.8 189 56.6
CiPaw.02G177100 Carya illinoinensis HOM05D005940 ORTHO05D007027 1.9e-51 206.5 192 58.3
Psat6g207800 Pisum sativum HOM05D005940 ORTHO05D007027 2.5e-51 206.1 192 56.8
Potri.010G216500 Populus trichocarpa HOM05D005940 ORTHO05D007027 2.5e-51 206.1 194 54.6
EL10Ac2g03550 Beta vulgaris HOM05D005940 ORTHO05D007027 4.2e-51 205.3 191 56.5
Sabra10G0167600 Salix brachista HOM05D005940 ORTHO05D007027 4.2e-51 205.3 194 54.6
HanXRQChr16g0510921 Helianthus annuus HOM05D005940 ORTHO05D007027 1.6e-50 203.4 185 57.3
Aqoxy7G03246 Aquilegia oxysepala HOM05D005940 ORTHO05D007027 2.7e-50 202.6 196 58.7
Ca_10908_v3 Cicer arietinum L. HOM05D005940 ORTHO05D007027 1.4e-49 200.3 190 55.3
Lj1A925T62 Lonicera japonica HOM05D005940 ORTHO05D007027 1.8e-49 199.9 161 65.8
Medtr1g103900 Medicago truncatula HOM05D005940 ORTHO05D007027 1.8e-49 199.9 192 56.2
PSO170G0010 Papaver somniferum HOM05D005940 ORTHO05D007027 1.8e-49 199.9 191 53.9
PSO357G0422 Papaver somniferum HOM05D005940 ORTHO05D007027 1.8e-49 199.9 191 54.5
Glyma.20G145700 Glycine max HOM05D005940 ORTHO05D007027 1.1e-48 197.2 191 56.5
TPR.G5540 Trifolium pratense HOM05D005940 ORTHO05D007027 1.1e-48 197.2 191 54.5
FAN01G1689 Fragaria x ananassa HOM05D005940 ORTHO05D007027 2.0e-48 196.4 187 57.8
Eucgr.G02795 Eucalyptus grandis HOM05D005940 ORTHO05D007027 2.2e-47 193.0 192 53.6
Medtr1g103870 Medicago truncatula HOM05D005940 ORTHO05D007027 2.8e-47 192.6 191 52.9
Lj5g0027680 Lotus japonicus HOM05D005940 ORTHO05D007027 6.3e-47 191.4 191 55.0
MELO3C011725.2 Cucumis melo HOM05D005940 ORTHO05D007027 1.4e-46 190.3 192 53.6
VMungo0720G1649 Vigna mungo HOM05D005940 ORTHO05D007027 1.4e-46 190.3 192 54.7
CsaV3_5G006320 Cucumis sativus L. HOM05D005940 ORTHO05D007027 1.8e-46 189.9 192 53.6
Medtr1g030720 Medicago truncatula HOM05D005940 ORTHO05D007027 2.4e-46 189.5 192 54.2
PGR102G2278 Punica granatum HOM05D005940 ORTHO05D007027 7.0e-46 188.0 192 52.1
Phvul.007G056900 Phaseolus vulgaris HOM05D005940 ORTHO05D007027 5.9e-45 184.9 191 53.4
AUR62020800 Chenopodium quinoa HOM05D005940 ORTHO05D007027 8.5e-44 181.0 160 58.1
SalBow3G3596 Salvia bowleyana HOM05D005940 ORTHO05D007027 8.5e-44 181.0 165 57.0
AUR62027909 Chenopodium quinoa HOM05D005940 ORTHO05D007027 1.1e-43 180.6 160 59.4
THA.LOC104809986 Tarenaya hassleriana HOM05D005940 ORTHO05D007027 2.5e-43 179.5 195 52.8
arahy.Tifrunner.gnm1.ann1.N3JKH2 Arachis hypogaea HOM05D005940 ORTHO05D007027 1.0e-41 174.1 174 54.0
arahy.Tifrunner.gnm1.ann1.3UA0UH Arachis hypogaea HOM05D005940 ORTHO05D007027 5.2e-41 171.8 174 54.0
Thhalv10010491m.g Eutrema salsugineum HOM05D005940 ORTHO05D007027 3.3e-40 169.1 196 52.0
Lalb_Chr21g0304671 Lupinus albus HOM05D005940 ORTHO05D007027 3.3e-40 169.1 189 50.8
Aa31sc33G20 Aethionema arabicum HOM05D005940 ORTHO05D007027 1.1e-38 164.1 201 47.8
Sp5g07450 Schrenkiella parvula HOM05D005940 ORTHO05D007027 1.1e-38 164.1 195 49.7
AL5G36080 Arabidopsis lyrata HOM05D005940 ORTHO05D007027 4.1e-38 162.2 197 50.3
SHI28162 Sapria himalayana HOM05D005940 ORTHO05D007027 4.5e-37 158.7 161 50.9
AT3G54970 Arabidopsis thaliana HOM05D005940 ORTHO05D007027 1.7e-36 156.8 193 49.2
BcaNung04648 Brassica carinata HOM05D005940 ORTHO05D007027 1.7e-36 156.8 194 49.5
C08p30200 Brassica napus HOM05D005940 ORTHO05D007027 1.7e-36 156.8 194 49.5
CARHR164970 Cardamine hirsuta HOM05D005940 ORTHO05D007027 2.2e-36 156.4 191 48.7
BraA09t40251Z Brassica rapa HOM05D005940 ORTHO05D007027 6.5e-36 154.8 194 50.0
BolC8t50626H Brassica oleracea HOM05D005940 ORTHO05D007027 1.5e-35 153.7 194 49.0
CAN.G693.9 Capsicum annuum HOM05D005940 ORTHO05D007027 2.5e-35 152.9 141 55.3
Carub.0005s2159 Capsella rubella HOM05D005940 ORTHO05D007027 5.5e-35 151.8 197 48.2
A09p47960 Brassica napus HOM05D005940 ORTHO05D007027 9.4e-35 151.0 194 48.5
CDE11G0619 Ceratophyllum demersum HOM05D005940 ORTHO05D007027 4.0e-33 145.6 191 45.0
ATR0594G026 Amborella trichopoda HOM05D005940 ORTHO05D007027 1.2e-32 144.1 192 45.8
BcaB01g00141 Brassica carinata HOM05D005940 ORTHO05D007027 1.5e-32 143.7 195 45.6
FAN03G1319 Fragaria x ananassa HOM05D005940 ORTHO05D007027 5.7e-32 141.7 142 54.2
Nitab4.5_0003582g0030 Nicotiana tabacum HOM05D005940 ORTHO05D007027 2.2e-31 139.8 102 69.6
HPP92_019787 Vanilla planifolia HOM05D005940 ORTHO05D007027 4.1e-30 135.6 196 45.4
Hund22470 Selenicereus undatus HOM05D005940 ORTHO05D007027 5.5e-27 125.2 112 57.1
COL.COLO4_23758 Corchorus olitorius HOM05D005940 ORTHO05D007027 1.2e-24 117.5 104 57.7
SEGI_22112 Sequoiadendron giganteum HOM05D005940 ORTHO05D007027 8.3e-23 111.3 188 39.4
Hma1.2p1_0192F.1_g083560 Hydrangea macrophylla HOM05D005940 ORTHO05D007027 7.0e-22 108.2 96 62.5
Zm00001eb194920 Zea mays HOM05D005940 ORTHO05D007027 4.5e-21 105.5 192 41.1
Os02g0252600 Oryza sativa ssp. japonica HOM05D005940 ORTHO05D007027 2.9e-20 102.8 185 42.2
PGR142G2620 Punica granatum HOM05D005940 ORTHO05D007027 5.5e-19 98.6 159 37.1
FAN06G2675 Fragaria x ananassa HOM05D005940 ORTHO05D007027 3.0e-17 92.8 114 48.2
Mapoly0016s0023 Marchantia polymorpha HOM05D005940 ORTHO05D007027 1.3e-15 87.4 185 32.4
AagrBONN_evm.TU.Sc2ySwM_344.1014 Anthoceros agrestis HOM05D005940 ORTHO05D007027 1.4e-14 84.0 191 33.0
Pp3c1_190 Physcomitrium patens HOM05D005940 ORTHO05D007027 4.1e-14 82.4 173 37.6
BcaNung04643 Brassica carinata HOM05D005940 ORTHO05D007027 8.6e-12 74.7 81 50.6
HPP92_019693 Vanilla planifolia HOM05D005940 ORTHO05D002769 1.5e-11 73.9 61 62.3
unitig_46.g18613 Utricularia gibba HOM05D005940 ORTHO05D007027 6.8e-09 65.1 49 57.1
SMO201G0153 Selaginella moellendorffii HOM05D005940 ORTHO05D007027 7.5e-08 61.6 188 31.4
SMO112G0074 Selaginella moellendorffii HOM05D005940 ORTHO05D007027 1.4e-06 57.4 184 31.5


User provided reference genes

Program Settings