Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031019 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 1.7e-99 365.9 177 100.0
CSS0028903 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 8.0e-81 303.9 177 87.0
CSS0042623 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 6.3e-78 294.3 159 89.9
PGSC0003DMG402000346 Solanum tuberosum HOM05D004235 ORTHO05D005157 1.0e-72 276.9 159 83.6
CAN.G1241.9 Capsicum annuum HOM05D004235 ORTHO05D005157 1.8e-72 276.2 159 83.0
Atru.chr7.1524 Acer truncatum HOM05D004235 ORTHO05D005157 4.0e-72 275.0 162 82.1
Rhsim03G0234900 Rhododendron simsii HOM05D004235 ORTHO05D005157 4.0e-72 275.0 157 84.1
Dinv36730 Davidia involucrata HOM05D004235 ORTHO05D005157 5.2e-72 274.6 159 84.3
GSVIVG01015250001 Vitis vinifera HOM05D004235 ORTHO05D005157 6.8e-72 274.2 159 83.6
Solyc12g008710.2 Solanum lycopersicum HOM05D004235 ORTHO05D005157 8.9e-72 273.9 159 82.4
Sopen12g003640 Solanum pennellii HOM05D004235 ORTHO05D005157 8.9e-72 273.9 159 82.4
Peaxi162Scf00498g00032 Petunia axillaris HOM05D004235 ORTHO05D005157 2.0e-71 272.7 159 83.0
Lj7C671G7 Lonicera japonica HOM05D004235 ORTHO05D005157 3.4e-71 271.9 159 83.0
Nitab4.5_0003781g0020 Nicotiana tabacum HOM05D004235 ORTHO05D005157 9.8e-71 270.4 159 81.1
Glyma.05G223700 Glycine max HOM05D004235 ORTHO05D005157 1.3e-70 270.0 159 78.6
Glyma.08G030800 Glycine max HOM05D004235 ORTHO05D005157 1.3e-70 270.0 159 79.2
Nitab4.5_0000540g0150 Nicotiana tabacum HOM05D004235 ORTHO05D005157 1.3e-70 270.0 159 81.1
Hma1.2p1_1074F.1_g254400 Hydrangea macrophylla HOM05D004235 ORTHO05D005157 2.9e-70 268.9 159 80.5
Thecc.09G094700 Theobroma cacao HOM05D004235 ORTHO05D005157 2.9e-70 268.9 159 81.1
COL.COLO4_18249 Corchorus olitorius HOM05D004235 ORTHO05D005157 3.7e-70 268.5 159 81.1
Phvul.002G305500 Phaseolus vulgaris HOM05D004235 ORTHO05D005157 4.9e-70 268.1 159 78.0
Gohir.A05G028200 Gossypium hirsutum HOM05D004235 ORTHO05D005157 1.1e-69 266.9 159 81.1
VMungo0251G2139 Vigna mungo HOM05D004235 ORTHO05D005157 1.1e-69 266.9 159 77.4
vmacro06271 Vaccinium macrocarpon HOM05D004235 ORTHO05D005157 1.4e-69 266.5 170 78.8
Lj4g0008017 Lotus japonicus HOM05D004235 ORTHO05D005157 1.9e-69 266.2 159 78.0
Gorai.009G030000 Gossypium raimondii HOM05D004235 ORTHO05D005157 2.4e-69 265.8 159 80.5
Cc06_g10940 Coffea canephora HOM05D004235 ORTHO05D005157 5.4e-69 264.6 159 80.5
Duzib168G2142 Durio zibethinus HOM05D004235 ORTHO05D005157 5.4e-69 264.6 159 79.9
Medtr8g101950 Medicago truncatula HOM05D004235 ORTHO05D005157 9.2e-69 263.8 158 77.8
Gohir.D05G029800 Gossypium hirsutum HOM05D004235 ORTHO05D005157 1.2e-68 263.5 159 79.9
Psat7g019200 Pisum sativum HOM05D004235 ORTHO05D005157 1.2e-68 263.5 158 77.8
arahy.Tifrunner.gnm1.ann1.00M5T5 Arachis hypogaea HOM05D004235 ORTHO05D005157 3.5e-68 261.9 159 75.5
arahy.Tifrunner.gnm1.ann1.VZDV7L Arachis hypogaea HOM05D004235 ORTHO05D005157 4.6e-68 261.5 159 74.8
Eucgr.C03689 Eucalyptus grandis HOM05D004235 ORTHO05D005157 4.6e-68 261.5 162 77.8
TWI34G1426 Tripterygium wilfordii HOM05D004235 ORTHO05D005157 6.0e-68 261.2 159 78.6
FvH4_1g06790 Fragaria vesca HOM05D004235 ORTHO05D005157 7.8e-68 260.8 159 79.2
FAN19G3193 Fragaria x ananassa HOM05D004235 ORTHO05D005157 1.0e-67 260.4 159 78.6
ECA236G4919 Erigeron canadensis HOM05D004235 ORTHO05D005157 1.3e-67 260.0 162 76.5
FAN26G0912 Fragaria x ananassa HOM05D004235 ORTHO05D005157 1.3e-67 260.0 159 78.6
FAN28G2658 Fragaria x ananassa HOM05D004235 ORTHO05D005157 1.3e-67 260.0 159 78.6
RcHm_v2.0_Chr2g0092561 Rosa chinensis HOM05D004235 ORTHO05D005157 1.3e-67 260.0 159 79.2
TAR383G0914 Trochodendron aralioides HOM05D004235 ORTHO05D005157 1.3e-67 260.0 159 79.2
Cfa003136 Carpinus fangiana HOM05D004235 ORTHO05D005157 2.3e-67 259.2 159 78.0
QL02p063521 Quercus lobata HOM05D004235 ORTHO05D005157 2.3e-67 259.2 159 78.6
Ca_17388_v3 Cicer arietinum L. HOM05D004235 ORTHO05D005157 3.9e-67 258.5 158 76.6
Haze_25867 Corylus avellana HOM05D004235 ORTHO05D005157 3.9e-67 258.5 159 77.4
TPR.G25478 Trifolium pratense HOM05D004235 ORTHO05D005157 6.6e-67 257.7 158 75.9
FAN23G1406 Fragaria x ananassa HOM05D004235 ORTHO05D005157 8.6e-67 257.3 159 78.0
CiPaw.03G220000 Carya illinoinensis HOM05D004235 ORTHO05D005157 1.1e-66 256.9 162 77.2
FAN26G2547 Fragaria x ananassa HOM05D004235 ORTHO05D005157 1.5e-66 256.5 159 78.0
HanXRQChr04g0112481 Helianthus annuus HOM05D004235 ORTHO05D005157 1.5e-66 256.5 159 75.5
Prupe.7G214900 Prunus persica HOM05D004235 ORTHO05D005157 1.5e-66 256.5 157 79.0
DCAR_028630 Daucus carota HOM05D004235 ORTHO05D005157 1.9e-66 256.1 159 76.7
Lsat_1_v5_gn_8_88100 Lactuca sativa HOM05D004235 ORTHO05D005157 3.3e-66 255.4 159 74.2
MELO3C004614.2 Cucumis melo HOM05D004235 ORTHO05D005157 4.3e-66 255.0 159 78.0
Migut.J00436 Erythranthe guttata HOM05D004235 ORTHO05D005157 7.3e-66 254.2 160 75.0
Nn8g38947 Nelumbo nucifera HOM05D004235 ORTHO05D005157 7.3e-66 254.2 159 76.7
ClCG11G001880 Citrullus lanatus HOM05D004235 ORTHO05D005157 9.5e-66 253.8 159 78.0
ATR0789G124 Amborella trichopoda HOM05D004235 ORTHO05D005157 1.2e-65 253.4 159 75.5
MD15G1202300 Malus domestica HOM05D004235 ORTHO05D005157 1.2e-65 253.4 158 78.5
Sed0001781 Sechium edule HOM05D004235 ORTHO05D005157 1.2e-65 253.4 159 76.1
THA.LOC104811734 Tarenaya hassleriana HOM05D004235 ORTHO05D005157 1.2e-65 253.4 159 75.5
CANSAT56G3324 Cannabis sativa HOM05D004235 ORTHO05D005157 1.6e-65 253.1 159 77.4
THA.LOC104817747 Tarenaya hassleriana HOM05D004235 ORTHO05D005157 2.8e-65 252.3 159 74.2
CSS0043888 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 3.6e-65 251.9 159 79.9
CsaV3_2G001610 Cucumis sativus L. HOM05D004235 ORTHO05D005157 1.1e-64 250.4 159 76.7
Manes.16G105300 Manihot esculenta HOM05D004235 ORTHO05D005157 3.1e-64 248.8 159 74.8
Aqoxy7G01320 Aquilegia oxysepala HOM05D004235 ORTHO05D005157 4.0e-64 248.4 159 72.3
Sc04g0004610 Simmondsia chinensis HOM05D004235 ORTHO05D005157 4.0e-64 248.4 154 75.3
CSS0008185 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 1.2e-63 246.9 160 78.1
PSO063G2511 Papaver somniferum HOM05D004235 ORTHO05D005157 1.5e-63 246.5 161 73.9
PGR102G2758 Punica granatum HOM05D004235 ORTHO05D005157 2.0e-63 246.1 159 73.6
SGA_v2.0_scaffold62G21574 Striga asiatica HOM05D004235 ORTHO05D005157 2.0e-63 246.1 160 73.8
PSO832G0536 Papaver somniferum HOM05D004235 ORTHO05D005157 4.4e-63 245.0 161 73.3
Thecc.09G094500 Theobroma cacao HOM05D004235 ORTHO05D005157 9.8e-63 243.8 159 74.2
Zm00001eb162240 Zea mays HOM05D004235 ORTHO05D005157 1.3e-62 243.4 159 73.0
TWI63G1589 Tripterygium wilfordii HOM05D004235 ORTHO05D005157 2.4e-61 239.2 159 73.6
Carub.0008s1721 Capsella rubella HOM05D004235 ORTHO05D005157 5.4e-61 238.0 159 69.8
unitig_26.g9162 Utricularia gibba HOM05D004235 ORTHO05D005157 5.4e-61 238.0 159 71.7
HPP92_009154 Vanilla planifolia HOM05D004235 ORTHO05D005157 7.1e-61 237.7 160 68.8
CARHR270480 Cardamine hirsuta HOM05D004235 ORTHO05D005157 9.2e-61 237.3 159 69.8
Sp6g18480 Schrenkiella parvula HOM05D004235 ORTHO05D005157 9.2e-61 237.3 159 69.8
AL8G32560 Arabidopsis lyrata HOM05D004235 ORTHO05D005157 1.2e-60 236.9 159 69.2
AT5G56730 Arabidopsis thaliana HOM05D004235 ORTHO05D005157 1.2e-60 236.9 159 70.4
BcaC04g20058 Brassica carinata HOM05D004235 ORTHO05D005157 1.2e-60 236.9 159 69.2
BolC9t57680H Brassica oleracea HOM05D004235 ORTHO05D005157 1.2e-60 236.9 159 69.2
BraA10t43498Z Brassica rapa HOM05D004235 ORTHO05D005157 1.2e-60 236.9 159 69.2
Gohir.A08G244500 Gossypium hirsutum HOM05D004235 ORTHO05D005157 2.1e-60 236.1 159 71.1
A10p14070 Brassica napus HOM05D004235 ORTHO05D005157 3.5e-60 235.3 159 68.6
Gohir.D08G265400 Gossypium hirsutum HOM05D004235 ORTHO05D005157 4.6e-60 235.0 159 70.4
Gorai.004G283400 Gossypium raimondii HOM05D004235 ORTHO05D005157 4.6e-60 235.0 159 70.4
EL10Ac8g19244 Beta vulgaris HOM05D004235 ORTHO05D005157 7.8e-60 234.2 160 70.0
Hund06688 Selenicereus undatus HOM05D004235 ORTHO05D005157 7.8e-60 234.2 160 70.6
Aa31LG3G12550 Aethionema arabicum HOM05D004235 ORTHO05D005157 1.3e-59 233.4 159 69.2
BcaB08g36065 Brassica carinata HOM05D004235 ORTHO05D005157 2.3e-59 232.6 159 67.3
C09p48300 Brassica napus HOM05D004235 ORTHO05D005157 3.0e-59 232.3 159 67.9
COL.COLO4_18248 Corchorus olitorius HOM05D004235 ORTHO05D005157 3.0e-59 232.3 158 71.5
AUR62034005 Chenopodium quinoa HOM05D004235 ORTHO05D005157 3.9e-59 231.9 160 68.8
Duzib168G1665 Durio zibethinus HOM05D004235 ORTHO05D005157 3.9e-59 231.9 159 69.2
AUR62027475 Chenopodium quinoa HOM05D004235 ORTHO05D005157 5.1e-59 231.5 160 68.1
SMO268G0025 Selaginella moellendorffii HOM05D004235 ORTHO05D005157 1.6e-57 226.5 160 63.8
Thecc.09G094600 Theobroma cacao HOM05D004235 ORTHO05D005157 2.1e-57 226.1 159 68.6
Duzib150G0514 Durio zibethinus HOM05D004235 ORTHO05D005157 4.0e-56 221.9 159 68.6
Sc18g0001660 Simmondsia chinensis HOM05D004235 ORTHO05D005157 8.9e-56 220.7 160 63.8
Ciclev10010146m.g Citrus clementina HOM05D004235 ORTHO05D005157 4.4e-55 218.4 159 68.6
COL.COLO4_18247 Corchorus olitorius HOM05D004235 ORTHO05D005157 7.6e-55 217.6 158 65.8
Migut.J00437 Erythranthe guttata HOM05D004235 ORTHO05D005157 9.9e-55 217.2 160 66.2
Mapoly0007s0115 Marchantia polymorpha HOM05D004235 ORTHO05D005157 4.9e-54 214.9 159 64.8
Hund09051 Selenicereus undatus HOM05D004235 ORTHO05D005157 1.1e-53 213.8 159 62.9
Sc18g0001680 Simmondsia chinensis HOM05D004235 ORTHO05D005157 3.2e-53 212.2 159 64.8
COL.COLO4_18244 Corchorus olitorius HOM05D004235 ORTHO05D005157 5.4e-53 211.5 159 66.0
Cpa.g.sc2319.2 Carica papaya HOM05D004235 ORTHO05D005157 9.2e-53 210.7 126 82.5
Oeu052124.2 Olea europaea HOM05D004235 ORTHO05D005157 7.8e-52 207.6 152 67.1
Ah.09g230260 Amaranthus hybridus HOM05D004235 ORTHO05D005157 1.0e-51 207.2 157 63.1
EL10Ac8g18336 Beta vulgaris HOM05D004235 ORTHO05D005157 1.0e-51 207.2 158 62.0
AUR62021351 Chenopodium quinoa HOM05D004235 ORTHO05D005157 1.5e-50 203.4 158 60.8
Pp3c19_10200 Physcomitrium patens HOM05D004235 ORTHO05D005157 1.9e-50 203.0 158 59.5
AUR62033265 Chenopodium quinoa HOM05D004235 ORTHO05D005157 3.3e-50 202.2 158 59.5
Aa31LG3G12660 Aethionema arabicum HOM05D004235 ORTHO05D005157 1.2e-49 200.3 143 67.1
Thhalv10012682m.g Eutrema salsugineum HOM05D004235 ORTHO05D005157 1.4e-48 196.8 152 61.8
Pp3c22_21190 Physcomitrium patens HOM05D004235 ORTHO05D005157 2.0e-47 193.0 158 58.2
COL.COLO4_18245 Corchorus olitorius HOM05D004235 ORTHO05D005157 2.9e-46 189.1 132 71.2
CBR_g39508 Chara braunii HOM05D004235 ORTHO05D005157 7.8e-44 181.0 161 54.0
C02p28510 Brassica napus HOM05D004235 ORTHO05D005157 1.7e-38 163.3 108 70.4
BolC2t08892H Brassica oleracea HOM05D004235 ORTHO05D005157 1.7e-38 163.3 108 70.4
BcaC03g15257 Brassica carinata HOM05D004235 ORTHO05D005157 2.0e-31 139.8 80 78.8
SEGI_18611 Sequoiadendron giganteum HOM05D004235 ORTHO05D005157 4.3e-26 122.1 84 65.5
RcHm_v2.0_Chr2g0091881 Rosa chinensis HOM05D004235 ORTHO05D005157 3.7e-25 119.0 102 62.7
MCO05G244 Micromonas commoda HOM05D004235 ORTHO05D005157 1.8e-24 116.7 168 35.7
Aa31LG3G12610 Aethionema arabicum HOM05D004235 ORTHO05D005157 3.4e-23 112.5 68 76.5
Lalb_Chr09g0331751 Lupinus albus HOM05D004235 ORTHO05D005157 1.3e-22 110.5 76 67.1
Aa31LG3G12570 Aethionema arabicum HOM05D004235 ORTHO05D005157 2.2e-22 109.8 66 77.3
Lalb_Chr09g0331741 Lupinus albus HOM05D004235 ORTHO05D005157 3.2e-21 105.9 69 73.9
SEGI_40851 Sequoiadendron giganteum HOM05D004235 ORTHO05D005157 2.8e-17 92.8 76 51.3
PGSC0003DMG400037643 Solanum tuberosum HOM05D004235 ORTHO05D005157 2.4e-16 89.7 157 38.2
Cpa.g.sc78.62 Carica papaya HOM05D004235 ORTHO05D005157 7.2e-13 78.2 48 77.1
RcHm_v2.0_Chr6g0274801 Rosa chinensis HOM05D004235 ORTHO05D026109 1.1e-10 70.9 51 64.7


User provided reference genes

Program Settings