Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031015 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 6.8e-303 1043.1 500 100.0
CSS0035496 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.1e-300 1035.8 500 99.2
CSS0040194 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.1e-300 1035.8 500 99.0
CSS0040116 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.4e-300 1035.4 500 99.2
CSS0037937 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 2.8e-296 1021.1 500 97.8
CSS0046160 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 3.6e-296 1020.8 500 97.8
CSS0037157 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 6.2e-296 1020.0 500 97.8
CSS0002387 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.5e-294 1015.4 500 97.4
CSS0014623 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.5e-294 1015.4 500 97.2
CSS0035234 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 2.6e-294 1014.6 500 97.4
CSS0028923 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 5.8e-294 1013.4 500 97.2
CSS0019796 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.3e-293 1012.3 500 97.0
CSS0005765 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.9e-292 1008.4 500 96.4
Prupe.4G266300 Prunus persica HOM05D007060 ORTHO05D009087 2.9e-213 745.3 500 71.0
TAR623G0941 Trochodendron aralioides HOM05D007060 ORTHO05D009087 1.6e-211 739.6 509 69.9
Cfa010526 Carpinus fangiana HOM05D007060 ORTHO05D009087 1.2e-206 723.4 499 69.7
CiPaw.13G043400 Carya illinoinensis HOM05D007060 ORTHO05D009087 1.7e-205 719.5 502 68.1
Potri.008G018200 Populus trichocarpa HOM05D007060 ORTHO05D009087 2.3e-202 709.1 499 68.9
Manes.07G085000 Manihot esculenta HOM05D007060 ORTHO05D009087 3.1e-202 708.8 493 69.2
CANSAT56G2168 Cannabis sativa HOM05D007060 ORTHO05D009087 4.0e-202 708.4 498 68.1
Gorai.N007800 Gossypium raimondii HOM05D007060 ORTHO05D009087 4.1e-199 698.4 474 69.4
Cc02_g09400 Coffea canephora HOM05D007060 ORTHO05D009087 7.0e-199 697.6 504 68.7
Duzib106G1772 Durio zibethinus HOM05D007060 ORTHO05D009087 1.6e-198 696.4 479 68.9
Thecc.10G116400 Theobroma cacao HOM05D007060 ORTHO05D009087 1.7e-197 693.0 470 68.9
MD03G1165900 Malus domestica HOM05D007060 ORTHO05D009087 1.2e-195 686.8 498 65.3
TWI63G0697 Tripterygium wilfordii HOM05D007060 ORTHO05D009087 1.6e-195 686.4 501 66.3
Nn6g34700 Nelumbo nucifera HOM05D007060 ORTHO05D009087 1.1e-194 683.7 497 66.4
RcHm_v2.0_Chr1g0331951 Rosa chinensis HOM05D007060 ORTHO05D009087 3.1e-194 682.2 499 66.1
Glyma.10G195800 Glycine max HOM05D007060 ORTHO05D009087 6.6e-189 664.5 497 65.0
Solyc11g006560.3 Solanum lycopersicum HOM05D007060 ORTHO05D009087 1.5e-188 663.3 503 64.8
PGSC0003DMG400001998 Solanum tuberosum HOM05D007060 ORTHO05D009087 5.6e-188 661.4 509 64.2
QL04p047886 Quercus lobata HOM05D007060 ORTHO05D009087 9.5e-188 660.6 402 76.1
Lj5g0018387 Lotus japonicus HOM05D007060 ORTHO05D009087 1.8e-186 656.4 496 63.9
Lj3P923T49 Lonicera japonica HOM05D007060 ORTHO05D009087 9.9e-185 650.6 404 74.8
ClCG05G021920 Citrullus lanatus HOM05D007060 ORTHO05D009087 2.9e-184 649.0 500 61.8
Aqoxy1G00669 Aquilegia oxysepala HOM05D007060 ORTHO05D009087 8.3e-184 647.5 502 63.9
Sabra08G0011800 Salix brachista HOM05D007060 ORTHO05D009087 1.9e-183 646.4 400 74.5
Thhalv10020598m.g Eutrema salsugineum HOM05D007060 ORTHO05D009087 2.4e-183 646.0 492 65.0
Hma1.2p1_0457F.1_g156870 Hydrangea macrophylla HOM05D007060 ORTHO05D009087 3.2e-183 645.6 400 75.0
Atru.chr12.1066 Acer truncatum HOM05D007060 ORTHO05D009087 5.4e-183 644.8 400 74.2
AL3G22100 Arabidopsis lyrata HOM05D007060 ORTHO05D009087 9.2e-183 644.0 496 63.7
Rhsim03G0096200 Rhododendron simsii HOM05D007060 ORTHO05D009087 1.2e-182 643.7 404 76.0
Dinv08415 Davidia involucrata HOM05D007060 ORTHO05D009087 1.6e-182 643.3 360 80.6
Carub.0003s0986 Capsella rubella HOM05D007060 ORTHO05D009087 2.7e-182 642.5 479 64.9
AT3G10630 Arabidopsis thaliana HOM05D007060 ORTHO05D009087 3.5e-182 642.1 496 63.3
Medtr1g090540 Medicago truncatula HOM05D007060 ORTHO05D009087 1.7e-181 639.8 500 62.6
GSVIVG01034635001 Vitis vinifera HOM05D007060 ORTHO05D009087 3.0e-181 639.0 398 74.6
MSTRG.9036 Avicennia marina HOM05D007060 ORTHO05D009087 3.9e-181 638.6 502 62.4
Sp3g08940 Schrenkiella parvula HOM05D007060 ORTHO05D009087 3.9e-181 638.6 494 63.6
Oeu033276.1 Olea europaea HOM05D007060 ORTHO05D009087 6.6e-181 637.9 415 71.6
TPR.G37861 Trifolium pratense HOM05D007060 ORTHO05D009087 1.9e-180 636.3 499 62.3
Psat6g172000 Pisum sativum HOM05D007060 ORTHO05D009087 7.3e-180 634.4 499 62.7
VMungo0720G1293 Vigna mungo HOM05D007060 ORTHO05D009087 9.5e-180 634.0 500 63.0
Sopen11g002500 Solanum pennellii HOM05D007060 ORTHO05D009087 1.6e-179 633.3 409 71.9
COL.COLO4_07825 Corchorus olitorius HOM05D007060 ORTHO05D009087 3.1e-178 629.0 405 70.6
CARHR085210 Cardamine hirsuta HOM05D007060 ORTHO05D009087 1.2e-177 627.1 479 64.3
THA.LOC104816472 Tarenaya hassleriana HOM05D007060 ORTHO05D009087 1.2e-177 627.1 501 62.3
Ciclev10015484m.g Citrus clementina HOM05D007060 ORTHO05D009087 1.5e-177 626.7 400 72.8
MELO3C012336.2 Cucumis melo HOM05D007060 ORTHO05D009087 3.4e-177 625.5 501 61.3
CsaV3_5G035220 Cucumis sativus L. HOM05D007060 ORTHO05D009087 3.4e-177 625.5 501 61.1
PGR142G1122 Punica granatum HOM05D007060 ORTHO05D009087 1.3e-176 623.6 507 61.1
HanXRQChr02g0053541 Helianthus annuus HOM05D007060 ORTHO05D009087 8.4e-176 620.9 474 64.3
Sed0007060 Sechium edule HOM05D007060 ORTHO05D009087 8.4e-176 620.9 495 59.6
Migut.F00850 Erythranthe guttata HOM05D007060 ORTHO05D009087 1.4e-175 620.2 500 59.8
BolC1t05373H Brassica oleracea HOM05D007060 ORTHO05D009087 1.2e-174 617.1 494 61.7
A01p41570 Brassica napus HOM05D007060 ORTHO05D009087 3.5e-174 615.5 487 62.4
Gohir.D06G177400 Gossypium hirsutum HOM05D007060 ORTHO05D009087 3.5e-174 615.5 378 73.0
Actinidia03837 Actinidia chinensis HOM05D007060 ORTHO05D009087 5.1e-173 611.7 350 82.3
CAN.G143.24 Capsicum annuum HOM05D007060 ORTHO05D009087 6.6e-173 611.3 400 71.0
Cpa.g.sc54.25 Carica papaya HOM05D007060 ORTHO05D009087 8.7e-173 610.9 400 69.8
Nitab4.5_0001781g0140 Nicotiana tabacum HOM05D007060 ORTHO05D009087 2.5e-172 609.4 401 70.8
BraA01t04232Z Brassica rapa HOM05D007060 ORTHO05D009087 3.3e-172 609.0 487 61.8
Lsat_1_v5_gn_2_105821 Lactuca sativa HOM05D007060 ORTHO05D009087 2.8e-171 605.9 402 69.7
Phvul.007G138500 Phaseolus vulgaris HOM05D007060 ORTHO05D009087 6.2e-171 604.7 400 70.0
Peaxi162Scf00725g00056 Petunia axillaris HOM05D007060 ORTHO05D010136 1.8e-170 603.2 396 71.2
Nitab4.5_0007799g0060 Nicotiana tabacum HOM05D007060 ORTHO05D009087 9.0e-170 600.9 502 60.0
PGR142G0278 Punica granatum HOM05D007060 ORTHO05D009087 9.9e-169 597.4 506 59.5
Ca_10429_v3 Cicer arietinum L. HOM05D007060 ORTHO05D009087 1.3e-168 597.0 393 71.0
ECA238G3502 Erigeron canadensis HOM05D007060 ORTHO05D009087 9.3e-167 590.9 403 67.7
DCAR_005120 Daucus carota HOM05D007060 ORTHO05D009087 1.2e-166 590.5 370 73.0
unitig_46.g18644 Utricularia gibba HOM05D007060 ORTHO05D009087 9.0e-162 574.3 499 56.7
Sopen11g002460 Solanum pennellii HOM05D007060 ORTHO05D009087 5.4e-159 565.1 372 69.9
Sopen11g002480 Solanum pennellii HOM05D007060 ORTHO05D009087 4.6e-158 562.0 359 72.1
Os09g0296700 Oryza sativa ssp. japonica HOM05D007060 ORTHO05D009087 1.3e-157 560.5 443 60.5
SalBow1G5690 Salvia bowleyana HOM05D007060 ORTHO05D009087 3.9e-157 558.9 430 62.8
CDE06G1445 Ceratophyllum demersum HOM05D007060 ORTHO05D009087 6.2e-155 551.6 391 65.7
SEGI_33772 Sequoiadendron giganteum HOM05D007060 ORTHO05D009087 1.8e-154 550.1 510 55.1
ATR0772G206 Amborella trichopoda HOM05D007060 ORTHO05D009087 9.0e-154 547.7 508 55.1
Zm00001eb309100 Zea mays HOM05D007060 ORTHO05D009087 7.9e-150 534.6 458 57.4
BcaB04g21186 Brassica carinata HOM05D007060 ORTHO05D009087 1.8e-149 533.5 478 57.5
Eucgr.G02680 Eucalyptus grandis HOM05D007060 ORTHO05D009087 2.3e-149 533.1 350 69.1
SMO203G0203 Selaginella moellendorffii HOM05D007060 ORTHO05D009087 1.2e-129 467.6 391 57.3
AagrBONN_evm.TU.Sc2ySwM_344.3615 Anthoceros agrestis HOM05D007060 ORTHO05D009087 2.0e-129 466.8 386 58.5
Lalb_Chr21g0312821 Lupinus albus HOM05D007060 ORTHO05D009087 1.7e-123 447.2 293 72.0
Glyma.20G194300 Glycine max HOM05D007060 ORTHO05D009087 1.2e-118 431.0 477 50.3
SHI22512 Sapria himalayana HOM05D007060 ORTHO05D009087 1.0e-117 427.9 353 59.5
Pp3c6_17860 Physcomitrium patens HOM05D007060 ORTHO05D009087 2.3e-109 400.2 407 49.1
CBR_g29369 Chara braunii HOM05D007060 ORTHO05D009087 7.2e-95 352.1 296 57.1
Hma1.2p1_0826F.1_g224930 Hydrangea macrophylla HOM05D007060 ORTHO05D009087 8.3e-91 338.6 209 74.2
MCO11G427 Micromonas commoda HOM05D007060 ORTHO05D009087 1.8e-85 320.9 433 39.5
Cre02.g118801 Chlamydomonas reinhardtii HOM05D007060 ORTHO05D009087 1.2e-81 308.1 433 40.9
PRCOL_00001658 Prasinoderma coloniale HOM05D007060 ORTHO05D009087 2.8e-70 270.4 444 37.2
TAR625G0310 Trochodendron aralioides HOM05D007060 ORTHO05D009087 5.4e-66 256.1 302 45.4
FAN24G3568 Fragaria x ananassa HOM05D007060 ORTHO05D009087 7.3e-63 245.7 399 38.3
FvH4_5g28400 Fragaria vesca HOM05D007060 ORTHO05D009087 3.1e-61 240.4 162 69.1
HPP92_006362 Vanilla planifolia HOM05D007060 ORTHO05D009087 1.1e-42 178.7 224 47.3
Cre09.g386732 Chlamydomonas reinhardtii HOM05D007060 ORTHO05D009087 3.5e-41 173.7 322 31.4
PRCOL_00006151 Prasinoderma coloniale HOM05D007060 ORTHO05D048979 6.9e-29 132.9 314 31.8
FAN03G2415 Fragaria x ananassa HOM05D007060 ORTHO05D009087 1.5e-28 131.7 100 66.0
MCO05G161 Micromonas commoda HOM05D007060 ORTHO05D048979 2.5e-23 114.4 293 29.4
MBI01_g04536_MAGBIO Magnolia biondii HOM05D007060 ORTHO05D009087 3.8e-19 100.5 73 64.4
AL1G24060 Arabidopsis lyrata HOM05D007060 ORTHO05D023607 2.5e-15 87.8 59 62.7
CBR_g29367 Chara braunii HOM05D007060 ORTHO05D009087 9.4e-10 69.3 89 40.4


User provided reference genes

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