Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030992 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 3.0e-108 395.2 202 100.0
Actinidia17042 Actinidia chinensis HOM05D005571 ORTHO05D006919 4.1e-73 278.5 208 73.1
Actinidia15492 Actinidia chinensis HOM05D005571 ORTHO05D006919 2.9e-71 272.3 208 72.6
vmacro21809 Vaccinium macrocarpon HOM05D005571 ORTHO05D006919 5.4e-65 251.5 216 70.8
Hma1.2p1_0157F.1_g069390 Hydrangea macrophylla HOM05D005571 ORTHO05D006919 2.8e-61 239.2 212 64.6
Potri.005G250800 Populus trichocarpa HOM05D005571 ORTHO05D006919 5.2e-60 235.0 211 63.5
Rhsim06G0007100 Rhododendron simsii HOM05D005571 ORTHO05D006919 2.6e-59 232.6 216 67.6
CSS0029462 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 5.8e-59 231.5 209 67.0
Dinv05532 Davidia involucrata HOM05D005571 ORTHO05D006919 3.7e-58 228.8 206 65.5
GSVIVG01008671001 Vitis vinifera HOM05D005571 ORTHO05D006919 1.9e-57 226.5 210 63.8
Sabra05G0194000 Salix brachista HOM05D005571 ORTHO05D006919 2.4e-57 226.1 209 61.7
Thecc.08G059400 Theobroma cacao HOM05D005571 ORTHO05D006919 4.6e-56 221.9 214 61.7
Duzib093G0863 Durio zibethinus HOM05D005571 ORTHO05D006919 8.6e-55 217.6 213 58.7
TAR628G0603 Trochodendron aralioides HOM05D005571 ORTHO05D006919 8.6e-55 217.6 216 60.2
Potri.002G010400 Populus trichocarpa HOM05D005571 ORTHO05D006919 1.1e-54 217.2 211 61.1
Manes.18G005301 Manihot esculenta HOM05D005571 ORTHO05D006919 4.7e-53 211.8 210 58.6
Nitab4.5_0000588g0080 Nicotiana tabacum HOM05D005571 ORTHO05D006919 8.9e-52 207.6 213 57.3
Lj4A11T70 Lonicera japonica HOM05D005571 ORTHO05D006919 1.2e-51 207.2 211 58.8
Duzib116G0932 Durio zibethinus HOM05D005571 ORTHO05D006919 1.5e-51 206.8 214 59.3
Ciclev10002509m.g Citrus clementina HOM05D005571 ORTHO05D006919 9.9e-51 204.1 210 57.1
ClCG08G009410 Citrullus lanatus HOM05D005571 ORTHO05D006919 1.7e-50 203.4 213 60.1
Manes.05G133900 Manihot esculenta HOM05D005571 ORTHO05D006919 4.9e-50 201.8 210 59.0
COL.COLO4_05218 Corchorus olitorius HOM05D005571 ORTHO05D006919 6.4e-50 201.4 212 57.5
Sabra02G0007800 Salix brachista HOM05D005571 ORTHO05D006919 8.3e-50 201.1 211 59.7
Cc10_g00650 Coffea canephora HOM05D005571 ORTHO05D006919 3.2e-49 199.1 219 60.7
MELO3C026535.2 Cucumis melo HOM05D005571 ORTHO05D006919 3.2e-49 199.1 214 58.4
CsaV3_6G031520 Cucumis sativus L. HOM05D005571 ORTHO05D006919 4.1e-49 198.7 214 57.5
Peaxi162Scf00893g00005 Petunia axillaris HOM05D005571 ORTHO05D006919 3.5e-48 195.7 210 56.7
Haze_22782 Corylus avellana HOM05D005571 ORTHO05D006919 4.6e-48 195.3 211 55.5
TWI56G1114 Tripterygium wilfordii HOM05D005571 ORTHO05D006919 6.0e-48 194.9 209 55.0
CAN.G311.116 Capsicum annuum HOM05D005571 ORTHO05D006919 1.7e-47 193.4 214 55.1
CSS0039739 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 3.0e-47 192.6 208 60.1
Gohir.A05G179400 Gossypium hirsutum HOM05D005571 ORTHO05D006919 6.6e-47 191.4 223 54.7
PGSC0003DMG400009903 Solanum tuberosum HOM05D005571 ORTHO05D006919 6.6e-47 191.4 211 54.5
TWI12G0392 Tripterygium wilfordii HOM05D005571 ORTHO05D006919 6.6e-47 191.4 210 55.2
Cfa014080 Carpinus fangiana HOM05D005571 ORTHO05D006919 8.6e-47 191.0 210 55.7
CiPaw.07G138600 Carya illinoinensis HOM05D005571 ORTHO05D006919 1.1e-46 190.7 211 55.9
Nn6g31737 Nelumbo nucifera HOM05D005571 ORTHO05D006919 1.1e-46 190.7 205 56.1
Gohir.D05G182600 Gossypium hirsutum HOM05D005571 ORTHO05D006919 1.9e-46 189.9 222 53.2
Gorai.009G187900 Gossypium raimondii HOM05D005571 ORTHO05D006919 1.9e-46 189.9 222 53.2
Sopen04g035980 Solanum pennellii HOM05D005571 ORTHO05D006919 1.9e-46 189.9 216 54.2
CiPaw.08G073400 Carya illinoinensis HOM05D005571 ORTHO05D006919 4.3e-46 188.7 195 58.5
Dinv31944 Davidia involucrata HOM05D005571 ORTHO05D006919 1.2e-45 187.2 202 57.9
Sed0002015 Sechium edule HOM05D005571 ORTHO05D006919 6.2e-45 184.9 215 54.9
PGR083G0609 Punica granatum HOM05D005571 ORTHO05D006919 2.4e-44 183.0 213 54.0
Oeu064631.1 Olea europaea HOM05D005571 ORTHO05D006919 6.8e-44 181.4 216 56.5
QL02p014184 Quercus lobata HOM05D005571 ORTHO05D006919 4.4e-43 178.7 211 53.6
Gohir.D02G100200 Gossypium hirsutum HOM05D005571 ORTHO05D006919 9.9e-43 177.6 209 55.0
Gorai.005G113600 Gossypium raimondii HOM05D005571 ORTHO05D006919 9.9e-43 177.6 209 55.0
DCAR_009532 Daucus carota HOM05D005571 ORTHO05D006919 1.3e-42 177.2 206 51.9
MSTRG.24929 Avicennia marina HOM05D005571 ORTHO05D006919 1.9e-41 173.3 219 52.5
Glyma.06G018100 Glycine max HOM05D005571 ORTHO05D006919 2.4e-41 172.9 206 52.9
SalBow7G0698 Salvia bowleyana HOM05D005571 ORTHO05D006919 3.2e-41 172.6 219 52.1
SGA_v2.0_scaffold133G34635 Striga asiatica HOM05D005571 ORTHO05D006919 5.4e-41 171.8 222 50.9
FvH4_2g37430 Fragaria vesca HOM05D005571 ORTHO05D006919 1.2e-40 170.6 217 50.2
Aqoxy6G01708 Aquilegia oxysepala HOM05D005571 ORTHO05D006919 2.1e-40 169.9 216 51.4
Migut.C00385 Erythranthe guttata HOM05D005571 ORTHO05D006919 1.3e-39 167.2 230 53.0
FAN15G1374 Fragaria x ananassa HOM05D005571 ORTHO05D006919 2.3e-39 166.4 205 51.7
Oeu035840.1 Olea europaea HOM05D005571 ORTHO05D006919 3.9e-39 165.6 214 51.9
FAN27G2782 Fragaria x ananassa HOM05D005571 ORTHO05D006919 5.1e-39 165.2 213 49.8
FAN20G2818 Fragaria x ananassa HOM05D005571 ORTHO05D006919 1.1e-38 164.1 213 49.3
Lsat_1_v5_gn_2_4041 Lactuca sativa HOM05D005571 ORTHO05D006919 1.9e-38 163.3 222 50.0
CSS0038566 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 4.3e-38 162.2 208 53.8
Glyma.04G017800 Glycine max HOM05D005571 ORTHO05D006919 4.3e-38 162.2 208 50.5
SalBow5G5667 Salvia bowleyana HOM05D005571 ORTHO05D006919 5.6e-38 161.8 199 52.8
Lj1g0015612 Lotus japonicus HOM05D005571 ORTHO05D006919 9.6e-38 161.0 220 50.5
RcHm_v2.0_Chr6g0304291 Rosa chinensis HOM05D005571 ORTHO05D006919 2.8e-37 159.5 211 49.8
Oeu000692.1 Olea europaea HOM05D005571 ORTHO05D006919 8.1e-37 157.9 211 52.1
Hund01764 Selenicereus undatus HOM05D005571 ORTHO05D006919 9.0e-36 154.5 207 49.8
Phvul.009G010900 Phaseolus vulgaris HOM05D005571 ORTHO05D006919 1.2e-35 154.1 202 49.5
Sc02g0009100 Simmondsia chinensis HOM05D005571 ORTHO05D006919 1.2e-35 154.1 205 49.3
VMungo1309G0957 Vigna mungo HOM05D005571 ORTHO05D006919 1.2e-35 154.1 203 48.8
HanXRQChr06g0183961 Helianthus annuus HOM05D005571 ORTHO05D006919 2.0e-35 153.3 191 52.4
MSTRG.977 Avicennia marina HOM05D005571 ORTHO05D006919 4.4e-35 152.1 192 52.1
EL10Ac1g01953 Beta vulgaris HOM05D005571 ORTHO05D006919 1.3e-34 150.6 209 51.2
Atru.chr13.137 Acer truncatum HOM05D005571 ORTHO05D006919 1.4e-33 147.1 147 63.3
arahy.Tifrunner.gnm1.ann1.G9B5FS Arachis hypogaea HOM05D005571 ORTHO05D006919 2.4e-33 146.4 192 49.0
Cfa012650 Carpinus fangiana HOM05D005571 ORTHO05D006919 3.2e-33 146.0 187 51.3
Lalb_Chr23g0265781 Lupinus albus HOM05D005571 ORTHO05D006919 4.2e-33 145.6 205 50.2
arahy.Tifrunner.gnm1.ann1.VC4QUA Arachis hypogaea HOM05D005571 ORTHO05D006919 5.4e-33 145.2 192 49.0
HanXRQChr14g0428071 Helianthus annuus HOM05D005571 ORTHO05D006919 5.4e-33 145.2 209 48.8
MBI05_g43168_MAGBIO Magnolia biondii HOM05D005571 ORTHO05D006919 5.1e-31 138.7 204 48.0
AUR62040795 Chenopodium quinoa HOM05D005571 ORTHO05D006919 1.1e-30 137.5 187 49.2
Medtr3g115300 Medicago truncatula HOM05D005571 ORTHO05D006919 5.6e-30 135.2 217 45.2
unitig_747.g21542 Utricularia gibba HOM05D005571 ORTHO05D006919 9.6e-30 134.4 222 47.3
ECA238G3324 Erigeron canadensis HOM05D005571 ORTHO05D007881 1.6e-29 133.7 166 51.8
TPR.G38112 Trifolium pratense HOM05D005571 ORTHO05D006919 2.1e-29 133.3 217 44.2
Sabra11G0114300 Salix brachista HOM05D005571 ORTHO05D006919 2.8e-29 132.9 127 59.1
THA.LOC104813174 Tarenaya hassleriana HOM05D005571 ORTHO05D006919 6.2e-29 131.7 221 46.2
Ah.11g041150 Amaranthus hybridus HOM05D005571 ORTHO05D006919 8.1e-29 131.3 186 47.3
CANSAT25G0564 Cannabis sativa HOM05D005571 ORTHO05D006919 1.1e-28 131.0 201 48.8
PSO675G2006 Papaver somniferum HOM05D005571 ORTHO05D006919 1.1e-28 131.0 221 44.3
AL8G19260 Arabidopsis lyrata HOM05D005571 ORTHO05D006919 1.4e-28 130.6 226 46.9
AT5G42330 Arabidopsis thaliana HOM05D005571 ORTHO05D006919 1.4e-28 130.6 221 46.6
Aa31LG9G12460 Aethionema arabicum HOM05D005571 ORTHO05D006919 1.2e-27 127.5 218 43.6
A03p09420 Brassica napus HOM05D005571 ORTHO05D006919 2.6e-27 126.3 216 45.8
BraA03t10260Z Brassica rapa HOM05D005571 ORTHO05D006919 2.6e-27 126.3 216 45.8
PSO541G4697 Papaver somniferum HOM05D005571 ORTHO05D006919 4.5e-27 125.6 185 44.9
BcaB01g05139 Brassica carinata HOM05D005571 ORTHO05D006919 1.3e-26 124.0 216 45.8
Carub.0008s0685 Capsella rubella HOM05D005571 ORTHO05D006919 1.3e-26 124.0 214 44.9
THA.LOC104825425 Tarenaya hassleriana HOM05D005571 ORTHO05D006919 1.3e-26 124.0 194 45.4
C03p11000 Brassica napus HOM05D005571 ORTHO05D006919 2.9e-26 122.9 216 45.4
BolC3t13569H Brassica oleracea HOM05D005571 ORTHO05D006919 3.8e-26 122.5 218 45.9
BcaB01g04868 Brassica carinata HOM05D005571 ORTHO05D006919 1.4e-25 120.6 221 44.3
Ca_15432_v3 Cicer arietinum L. HOM05D005571 ORTHO05D006919 1.4e-25 120.6 167 48.5
Ca_15457_v3 Cicer arietinum L. HOM05D005571 ORTHO05D006919 1.4e-25 120.6 167 48.5
Psat0s2670g0120 Pisum sativum HOM05D005571 ORTHO05D006919 1.9e-25 120.2 223 42.6
CARHR284960 Cardamine hirsuta HOM05D005571 ORTHO05D006919 3.2e-25 119.4 227 42.7
Hund05103 Selenicereus undatus HOM05D001348 ORTHO05D002788 9.3e-25 117.9 215 41.4
unitig_0.g2084 Utricularia gibba HOM05D005571 ORTHO05D006919 1.2e-24 117.5 179 48.6
Sp6g25100 Schrenkiella parvula HOM05D005571 ORTHO05D006919 2.1e-24 116.7 221 47.1
Prupe.1G354300 Prunus persica HOM05D005571 ORTHO05D006919 2.7e-24 116.3 268 39.6
Thhalv10014687m.g Eutrema salsugineum HOM05D005571 ORTHO05D006919 7.9e-24 114.8 222 44.6
BcaB08g36584 Brassica carinata HOM05D005571 ORTHO05D006919 2.8e-21 106.3 232 42.2
Cpa.g.c36471 Carica papaya HOM05D005571 ORTHO05D006919 4.0e-20 102.4 79 64.6
Sc15g0004410 Simmondsia chinensis HOM05D005571 ORTHO05D006919 3.4e-19 99.4 170 42.9
Gohir.A02G084300 Gossypium hirsutum HOM05D005571 ORTHO05D006919 1.1e-17 94.4 133 46.6
SHI42933 Sapria himalayana HOM05D005571 ORTHO05D006919 9.3e-17 91.3 175 37.1
Solyc04g082380.4 Solanum lycopersicum HOM05D005571 ORTHO05D006919 2.1e-16 90.1 108 52.8
Duzib128G0429 Durio zibethinus HOM05D005571 ORTHO05D006919 7.9e-16 88.2 103 50.5
AUR62036861 Chenopodium quinoa HOM05D005571 ORTHO05D006919 1.5e-14 84.0 202 35.6
BcaC04g18579 Brassica carinata HOM05D005571 ORTHO05D006919 2.5e-14 83.2 178 43.8
C09p56960 Brassica napus HOM05D005571 ORTHO05D006919 2.5e-14 83.2 178 43.8
BolC9t58559H Brassica oleracea HOM05D005571 ORTHO05D006919 2.5e-14 83.2 178 43.8
CDE04G0695 Ceratophyllum demersum HOM05D005571 ORTHO05D006919 5.7e-14 82.0 180 37.2
Sabra11G0115000 Salix brachista HOM05D005571 ORTHO05D006919 7.4e-14 81.6 71 57.7
Sabra11G0115600 Salix brachista HOM05D005571 ORTHO05D006919 7.4e-14 81.6 71 57.7
HPP92_021048 Vanilla planifolia HOM05D005571 ORTHO05D006919 2.1e-13 80.1 152 39.5
A10p20370 Brassica napus HOM05D005571 ORTHO05D006919 5.3e-12 75.5 214 37.9
BraA10t44107Z Brassica rapa HOM05D005571 ORTHO05D006919 3.4e-11 72.8 148 41.9
CDE05G1909 Ceratophyllum demersum HOM05D005571 ORTHO05D006919 5.8e-11 72.0 154 37.0
Os07g0474300 Oryza sativa ssp. japonica HOM05D033341 ORTHO05D036979 2.9e-10 69.7 211 34.1
A02p05480 Brassica napus HOM05D005571 ORTHO05D006919 9.3e-09 64.7 110 47.3
BraA02t05499Z Brassica rapa HOM05D005571 ORTHO05D006919 9.3e-09 64.7 110 47.3
BcaC03g13663 Brassica carinata HOM05D005571 ORTHO05D006919 1.6e-08 63.9 93 51.6
BNapus_Darmor_BZH_scaffold_38p02630 Brassica napus HOM05D005571 ORTHO05D006919 1.6e-08 63.9 93 51.6
ECA238G3056 Erigeron canadensis HOM05D002204 ORTHO05D002875 2.1e-08 63.5 75 52.0


User provided reference genes

Program Settings