Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030988 Camellia sinensis var. sinensis HOM05D002989 ORTHO05D003218 1.5e-52 209.1 98 100.0
Dinv32887 Davidia involucrata HOM05D002989 ORTHO05D003218 1.0e-24 116.7 90 62.2
Actinidia24922 Actinidia chinensis HOM05D001150 ORTHO05D003218 6.5e-24 114.0 91 63.7
vmacro14890 Vaccinium macrocarpon HOM05D002989 ORTHO05D003218 1.5e-23 112.8 91 63.7
Rhsim01G0272200 Rhododendron simsii HOM05D002989 ORTHO05D003218 3.2e-23 111.7 88 65.9
GSVIVG01003117001 Vitis vinifera HOM05D002989 ORTHO05D003218 1.1e-20 103.2 90 54.4
Duzib211G0299 Durio zibethinus HOM05D002989 ORTHO05D003218 7.0e-18 94.0 90 47.8
Gorai.004G056100 Gossypium raimondii HOM05D002989 ORTHO05D003218 4.5e-17 91.3 90 47.8
Gohir.D08G055500 Gossypium hirsutum HOM05D002989 ORTHO05D003218 1.3e-16 89.7 90 47.8
Lj2C1165G7 Lonicera japonica HOM05D002989 ORTHO05D003218 1.3e-16 89.7 79 53.2
TAR365G0943 Trochodendron aralioides HOM05D002989 ORTHO05D003218 1.3e-16 89.7 81 51.9
AUR62011976 Chenopodium quinoa HOM05D002989 ORTHO05D003218 2.9e-16 88.6 90 46.7
AUR62032285 Chenopodium quinoa HOM05D002989 ORTHO05D003218 3.8e-16 88.2 90 46.7
Nn1g02454 Nelumbo nucifera HOM05D002989 ORTHO05D003218 1.1e-15 86.7 83 51.8
Gohir.A08G045205 Gossypium hirsutum HOM05D002989 ORTHO05D003218 1.5e-15 86.3 90 47.8
Potri.005G214650 Populus trichocarpa HOM05D002989 ORTHO05D003218 2.5e-15 85.5 90 50.0
Sc17g0001200 Simmondsia chinensis HOM05D002989 ORTHO05D003218 2.5e-15 85.5 90 48.9
Cc01_g19030 Coffea canephora HOM05D002989 ORTHO05D003218 5.5e-15 84.3 79 49.4
COL.COLO4_09194 Corchorus olitorius HOM05D002989 ORTHO05D003218 7.2e-15 84.0 90 50.0
EL10Ac5g10497 Beta vulgaris HOM05D002989 ORTHO05D003218 2.1e-14 82.4 91 48.4
Atru.chr5.1517 Acer truncatum HOM05D002989 ORTHO05D003218 1.8e-13 79.3 76 50.0
Cpa.g.sc52.114 Carica papaya HOM05D002989 ORTHO05D003218 3.0e-13 78.6 83 51.8
Ah.11g050240 Amaranthus hybridus HOM05D002989 ORTHO05D003218 1.2e-12 76.6 90 44.4
Thecc.01G272000 Theobroma cacao HOM05D002989 ORTHO05D003218 2.6e-12 75.5 90 44.4
CANSAT25G2944 Cannabis sativa HOM05D002989 ORTHO05D003218 4.4e-12 74.7 76 47.4
Cfa006196 Carpinus fangiana HOM05D002989 ORTHO05D003218 4.4e-12 74.7 90 44.4
Ciclev10018605m.g Citrus clementina HOM05D002989 ORTHO05D003218 9.8e-12 73.6 79 50.6
Sabra05G0164000 Salix brachista HOM05D002989 ORTHO05D003218 2.2e-11 72.4 80 50.0
Sp5g00200 Schrenkiella parvula HOM05D002989 ORTHO05D003218 2.2e-11 72.4 76 46.1
TWI12G0259 Tripterygium wilfordii HOM05D002989 ORTHO05D003218 2.2e-11 72.4 80 48.8
Thhalv10005760m.g Eutrema salsugineum HOM05D002989 ORTHO05D003218 3.7e-11 71.6 76 47.4
BcaB02g08065 Brassica carinata HOM05D002989 ORTHO05D003218 6.3e-11 70.9 76 47.4
BolC4t24522H Brassica oleracea HOM05D002989 ORTHO05D003218 6.3e-11 70.9 76 47.4
Hund02863 Selenicereus undatus HOM05D002989 ORTHO05D003218 8.3e-11 70.5 90 44.4
Manes.05G081600 Manihot esculenta HOM05D002989 ORTHO05D003218 1.1e-10 70.1 82 46.3
A04p00100 Brassica napus HOM05D002989 ORTHO05D003218 1.8e-10 69.3 76 47.4
BraA04t15730Z Brassica rapa HOM05D002989 ORTHO05D003218 1.8e-10 69.3 76 47.4
CARHR291630 Cardamine hirsuta HOM05D002989 ORTHO05D003218 3.1e-10 68.6 76 44.7
ECA247G3236 Erigeron canadensis HOM05D002989 ORTHO05D003218 9.1e-10 67.0 92 39.1
C04p29910 Brassica napus HOM05D002989 ORTHO05D003218 1.2e-09 66.6 76 46.1
QL12p042063 Quercus lobata HOM05D002989 ORTHO05D003218 1.2e-09 66.6 90 42.2
arahy.Tifrunner.gnm1.ann1.T1HKRS Arachis hypogaea HOM05D002989 ORTHO05D003218 2.0e-09 65.9 87 40.2
arahy.Tifrunner.gnm1.ann1.V0L3RT Arachis hypogaea HOM05D002989 ORTHO05D003218 2.0e-09 65.9 87 40.2
CiPaw.08G108900 Carya illinoinensis HOM05D002989 ORTHO05D003218 3.5e-09 65.1 93 40.9
CDE05G0153 Ceratophyllum demersum HOM05D002989 ORTHO05D003218 4.5e-09 64.7 98 36.7
Eucgr.K03327 Eucalyptus grandis HOM05D002989 ORTHO05D003218 5.9e-09 64.3 79 46.8
MSTRG.18266 Avicennia marina HOM05D002989 ORTHO05D003218 7.7e-09 63.9 80 46.2
Migut.D00359 Erythranthe guttata HOM05D002989 ORTHO05D003218 1.0e-08 63.5 84 41.7
Glyma.02G144500 Glycine max HOM05D002989 ORTHO05D003218 1.0e-08 63.5 80 38.8
Lalb_Chr21g0306351 Lupinus albus HOM05D002989 ORTHO05D003218 2.2e-08 62.4 80 40.0
Oeu025764.3 Olea europaea HOM05D002989 ORTHO05D003218 2.9e-08 62.0 79 43.0
AL5G46190 Arabidopsis lyrata HOM05D002989 ORTHO05D003218 3.8e-08 61.6 76 46.1
FvH4_2g23010 Fragaria vesca HOM05D002989 ORTHO05D003218 6.5e-08 60.8 47 55.3
Phvul.007G174700 Phaseolus vulgaris HOM05D002989 ORTHO05D003218 6.5e-08 60.8 80 40.0
MD03G1258500 Malus domestica HOM05D002989 ORTHO05D003218 8.5e-08 60.5 79 40.5
Carub.0005s2998 Capsella rubella HOM05D002989 ORTHO05D003218 1.5e-07 59.7 76 44.7
ClCG07G000490 Citrullus lanatus HOM05D002989 ORTHO05D003218 1.5e-07 59.7 80 42.5
PSO832G1612 Papaver somniferum HOM05D002989 ORTHO05D003218 1.5e-07 59.7 96 33.3
Lj5g0006345 Lotus japonicus HOM05D002989 ORTHO05D003218 1.9e-07 59.3 80 40.0
SGA_v2.0_scaffold1G00532 Striga asiatica HOM05D002989 ORTHO05D003218 2.5e-07 58.9 83 41.0
Haze_04647 Corylus avellana HOM05D002989 ORTHO05D003218 3.2e-07 58.5 64 46.9
DCAR_012505 Daucus carota HOM05D002989 ORTHO05D003218 3.2e-07 58.5 96 38.5
FAN24G2837 Fragaria x ananassa HOM05D002989 ORTHO05D003218 4.2e-07 58.2 37 62.2
RcHm_v2.0_Chr6g0290051 Rosa chinensis HOM05D002989 ORTHO05D003218 7.2e-07 57.4 89 39.3
AT3G63340 Arabidopsis thaliana HOM05D002989 ORTHO05D003218 9.4e-07 57.0 76 40.8
Os11g0586100 Oryza sativa ssp. japonica HOM05D002989 ORTHO05D003218 1.2e-06 56.6 81 40.7
Prupe.8G235000 Prunus persica HOM05D002989 ORTHO05D003218 1.2e-06 56.6 89 37.1
Lsat_1_v5_gn_9_7440 Lactuca sativa HOM05D002989 ORTHO05D003218 1.6e-06 56.2 79 40.5
FAN15G0470 Fragaria x ananassa HOM05D002989 ORTHO05D003218 2.1e-06 55.8 32 68.8
FAN20G1777 Fragaria x ananassa HOM05D002989 ORTHO05D003218 2.1e-06 55.8 32 68.8
FAN27G2040 Fragaria x ananassa HOM05D002989 ORTHO05D003218 2.1e-06 55.8 32 68.8
Medtr1g071370 Medicago truncatula HOM05D002989 ORTHO05D003218 2.7e-06 55.5 79 36.7
Psat6g059080 Pisum sativum HOM05D002989 ORTHO05D003218 4.7e-06 54.7 79 36.7
CAN.G380.7 Capsicum annuum HOM05D002989 ORTHO05D003218 6.1e-06 54.3 80 40.0
Ca_09731_v3 Cicer arietinum L. HOM05D002989 ORTHO05D003218 6.1e-06 54.3 79 36.7


User provided reference genes

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