Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030983 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 4.6e-76 287.7 138 100.0
CSS0043549 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 1.5e-58 229.6 139 84.2
CSS0019620 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 5.7e-58 227.6 126 88.9
Actinidia19083 Actinidia chinensis HOM05D006272 ORTHO05D007989 4.1e-56 221.5 139 80.6
vmacro16592 Vaccinium macrocarpon HOM05D006272 ORTHO05D007989 1.3e-54 216.5 139 79.1
Lj5A121G99 Lonicera japonica HOM05D006272 ORTHO05D007989 5.0e-54 214.5 127 84.3
Oeu041583.1 Olea europaea HOM05D006272 ORTHO05D007989 8.5e-54 213.8 131 78.6
Gohir.A03G017300 Gossypium hirsutum HOM05D006272 ORTHO05D007989 1.1e-53 213.4 135 78.5
Rhsim12G0162200 Rhododendron simsii HOM05D006272 ORTHO05D007989 1.1e-53 213.4 139 78.4
Gohir.D03G150700 Gossypium hirsutum HOM05D006272 ORTHO05D007989 1.5e-53 213.0 126 81.7
GSVIVG01007814001 Vitis vinifera HOM05D006272 ORTHO05D007989 1.9e-53 212.6 140 78.6
CAN.G2099.3 Capsicum annuum HOM05D006272 ORTHO05D007989 3.2e-53 211.8 139 77.7
Cc04_g13100 Coffea canephora HOM05D006272 ORTHO05D007989 3.2e-53 211.8 137 76.6
QL10p013391 Quercus lobata HOM05D006272 ORTHO05D007989 3.2e-53 211.8 126 81.0
Migut.D01790 Erythranthe guttata HOM05D006272 ORTHO05D007989 4.2e-53 211.5 139 75.5
Lalb_Chr23g0273081 Lupinus albus HOM05D006272 ORTHO05D007989 4.2e-53 211.5 139 74.1
Gorai.003G157900 Gossypium raimondii HOM05D006272 ORTHO05D007989 5.5e-53 211.1 126 81.0
Potri.015G072000 Populus trichocarpa HOM05D006272 ORTHO05D007989 7.2e-53 210.7 139 74.8
Thecc.03G005700 Theobroma cacao HOM05D006272 ORTHO05D007989 7.2e-53 210.7 125 80.0
Haze_07447 Corylus avellana HOM05D006272 ORTHO05D007989 1.2e-52 209.9 140 75.0
MD06G1180000 Malus domestica HOM05D006272 ORTHO05D007989 1.2e-52 209.9 136 77.2
Sopen03g033040 Solanum pennellii HOM05D006272 ORTHO05D007989 1.2e-52 209.9 139 76.3
MSTRG.4383 Avicennia marina HOM05D006272 ORTHO05D007989 1.6e-52 209.5 139 75.5
Ca_16206_v3 Cicer arietinum L. HOM05D006272 ORTHO05D007989 2.1e-52 209.1 139 74.8
Glyma.04G179400 Glycine max HOM05D006272 ORTHO05D007989 2.1e-52 209.1 139 75.5
Glyma.06G185200 Glycine max HOM05D006272 ORTHO05D007989 2.1e-52 209.1 139 74.8
Sabra15G0096800 Salix brachista HOM05D006272 ORTHO05D007989 2.7e-52 208.8 139 74.8
Solyc03g113990.3 Solanum lycopersicum HOM05D006272 ORTHO05D007989 2.7e-52 208.8 139 76.3
Manes.14G069600 Manihot esculenta HOM05D006272 ORTHO05D007989 3.6e-52 208.4 139 75.5
PGSC0003DMG400024586 Solanum tuberosum HOM05D006272 ORTHO05D007989 3.6e-52 208.4 139 75.5
CiPaw.12G023800 Carya illinoinensis HOM05D006272 ORTHO05D007989 4.7e-52 208.0 135 76.3
Duzib205G0574 Durio zibethinus HOM05D006272 ORTHO05D007989 4.7e-52 208.0 135 75.6
Atru.chr9.2416 Acer truncatum HOM05D006272 ORTHO05D007989 8.0e-52 207.2 126 78.6
arahy.Tifrunner.gnm1.ann1.I0QXBL Arachis hypogaea HOM05D006272 ORTHO05D007989 8.0e-52 207.2 127 78.7
COL.COLO4_04328 Corchorus olitorius HOM05D006272 ORTHO05D007989 8.0e-52 207.2 125 80.0
Phvul.009G181400 Phaseolus vulgaris HOM05D006272 ORTHO05D007989 8.0e-52 207.2 139 74.1
MD14G1185400 Malus domestica HOM05D006272 ORTHO05D007989 1.0e-51 206.8 136 75.7
Prupe.5G178100 Prunus persica HOM05D006272 ORTHO05D007989 1.0e-51 206.8 138 74.6
TPR.G15079 Trifolium pratense HOM05D006272 ORTHO05D007989 1.8e-51 206.1 139 72.7
RcHm_v2.0_Chr7g0179601 Rosa chinensis HOM05D006272 ORTHO05D007989 5.2e-51 204.5 135 76.3
Lj1g0014498 Lotus japonicus HOM05D006272 ORTHO05D007989 8.8e-51 203.8 139 71.9
ClCG06G016760 Citrullus lanatus HOM05D006272 ORTHO05D007989 1.1e-50 203.4 125 76.0
Lsat_1_v5_gn_4_72700 Lactuca sativa HOM05D006272 ORTHO05D007989 1.1e-50 203.4 130 73.8
Nitab4.5_0006432g0010 Nicotiana tabacum HOM05D006272 ORTHO05D007989 1.1e-50 203.4 139 75.5
Eucgr.B00343 Eucalyptus grandis HOM05D006272 ORTHO05D007989 1.5e-50 203.0 126 77.8
Psat5g113800 Pisum sativum HOM05D006272 ORTHO05D007989 1.5e-50 203.0 139 73.4
VMungo1309G0353 Vigna mungo HOM05D006272 ORTHO05D007989 1.5e-50 203.0 139 71.9
Ah.11g046120 Amaranthus hybridus HOM05D006272 ORTHO05D007989 2.0e-50 202.6 139 72.7
MD06G1180300 Malus domestica HOM05D006272 ORTHO05D007989 2.0e-50 202.6 144 72.9
FvH4_5g16490 Fragaria vesca HOM05D006272 ORTHO05D007989 2.6e-50 202.2 135 75.6
FAN04G2131 Fragaria x ananassa HOM05D006272 ORTHO05D007989 2.6e-50 202.2 125 79.2
FAN13G1305 Fragaria x ananassa HOM05D006272 ORTHO05D007989 2.6e-50 202.2 125 79.2
THA.LOC104809256 Tarenaya hassleriana HOM05D006272 ORTHO05D007989 2.6e-50 202.2 139 73.4
Ciclev10022132m.g Citrus clementina HOM05D006272 ORTHO05D007989 4.4e-50 201.4 135 74.8
Os04g0668800 Oryza sativa ssp. japonica HOM05D006272 ORTHO05D007989 4.4e-50 201.4 138 68.8
Sc12g0005560 Simmondsia chinensis HOM05D006272 ORTHO05D007989 4.4e-50 201.4 126 76.2
Medtr3g078320 Medicago truncatula HOM05D006272 ORTHO05D007989 5.7e-50 201.1 139 71.9
Cpa.g.c38966 Carica papaya HOM05D006272 ORTHO05D007989 7.4e-50 200.7 126 77.0
HanXRQChr16g0503601 Helianthus annuus HOM05D006272 ORTHO05D007989 9.7e-50 200.3 139 69.1
EL10Ac5g10820 Beta vulgaris HOM05D006272 ORTHO05D007989 1.7e-49 199.5 140 69.3
AUR62031036 Chenopodium quinoa HOM05D006272 ORTHO05D007989 2.8e-49 198.7 126 74.6
TAR622G0996 Trochodendron aralioides HOM05D006272 ORTHO05D007989 2.8e-49 198.7 125 76.0
CANSAT80G1784 Cannabis sativa HOM05D006272 ORTHO05D007989 4.8e-49 198.0 136 70.6
CsaV3_1G001760 Cucumis sativus L. HOM05D006272 ORTHO05D007989 4.8e-49 198.0 125 73.6
FAN18G3972 Fragaria x ananassa HOM05D006272 ORTHO05D007989 6.3e-49 197.6 153 66.0
MELO3C017116.2 Cucumis melo HOM05D006272 ORTHO05D007989 1.8e-48 196.1 125 74.4
Nn4g22890 Nelumbo nucifera HOM05D006272 ORTHO05D007524 2.4e-48 195.7 125 72.8
AUR62008277 Chenopodium quinoa HOM05D006272 ORTHO05D007989 5.3e-48 194.5 127 71.7
Zm00001eb433220 Zea mays HOM05D006272 ORTHO05D007989 9.1e-48 193.7 138 67.4
Sed0009129 Sechium edule HOM05D006272 ORTHO05D007989 1.6e-47 193.0 125 72.8
ECA232G4277 Erigeron canadensis HOM05D006272 ORTHO05D007989 2.0e-47 192.6 142 67.6
PGR083G1342 Punica granatum HOM05D006272 ORTHO05D007989 3.5e-47 191.8 135 70.4
SGA_v2.0_scaffold114G31850 Striga asiatica HOM05D006272 ORTHO05D007989 3.5e-47 191.8 140 71.4
Aqoxy3G03085 Aquilegia oxysepala HOM05D006272 ORTHO05D007989 5.9e-47 191.0 136 67.6
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 5.9e-47 191.0 126 73.0
Hund09410 Selenicereus undatus HOM05D006272 ORTHO05D007989 1.1e-45 186.8 114 78.9
Cfa019077 Carpinus fangiana HOM05D006272 ORTHO05D007989 1.5e-45 186.4 113 78.8
Nitab4.5_0001422g0120 Nicotiana tabacum HOM05D006272 ORTHO05D007989 1.5e-45 186.4 112 81.2
PSO832G1007 Papaver somniferum HOM05D006272 ORTHO05D007989 3.2e-45 185.3 141 65.2
arahy.Tifrunner.gnm1.ann1.LZB4LR Arachis hypogaea HOM05D006272 ORTHO05D007989 7.2e-45 184.1 113 78.8
BcaC04g20846 Brassica carinata HOM05D006272 ORTHO05D007989 1.2e-44 183.3 125 68.0
C09p38510 Brassica napus HOM05D006272 ORTHO05D007989 1.2e-44 183.3 125 68.0
BolC9t56708H Brassica oleracea HOM05D006272 ORTHO05D007989 1.2e-44 183.3 125 68.0
BraSC37t46149Z Brassica rapa HOM05D006272 ORTHO05D007989 1.2e-44 183.3 125 67.2
PSO063G7353 Papaver somniferum HOM05D006272 ORTHO05D007989 2.1e-44 182.6 126 69.0
Aqoxy3G03086 Aquilegia oxysepala HOM05D006272 ORTHO05D007989 2.7e-44 182.2 136 66.2
BcaB08g35362 Brassica carinata HOM05D006272 ORTHO05D007989 2.7e-44 182.2 125 68.8
A10p08550 Brassica napus HOM05D006272 ORTHO05D007989 3.6e-44 181.8 125 67.2
HPP92_028587 Vanilla planifolia HOM05D006272 ORTHO05D007989 3.6e-44 181.8 135 67.4
AL8G24090 Arabidopsis lyrata HOM05D006272 ORTHO05D007989 4.7e-44 181.4 125 69.6
Aa31LG3G6090 Aethionema arabicum HOM05D006272 ORTHO05D007989 1.0e-43 180.3 125 70.4
ATR1149G021 Amborella trichopoda HOM05D006272 ORTHO05D007989 1.4e-43 179.9 130 68.5
Carub.0008s1010 Capsella rubella HOM05D006272 ORTHO05D007989 1.4e-43 179.9 140 66.4
Thhalv10014644m.g Eutrema salsugineum HOM05D006272 ORTHO05D007989 1.8e-43 179.5 125 67.2
Peaxi162Scf00017g02427 Petunia axillaris HOM05D006272 ORTHO05D007989 2.3e-43 179.1 139 67.6
Sp6g11960 Schrenkiella parvula HOM05D006272 ORTHO05D007989 2.3e-43 179.1 140 64.3
AT5G50100 Arabidopsis thaliana HOM05D006272 ORTHO05D007989 4.0e-43 178.3 125 68.0
Mapoly0071s0065 Marchantia polymorpha HOM05D006272 ORTHO05D007989 1.2e-42 176.8 126 65.1
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 2.6e-42 175.6 150 62.0
DCAR_021559 Daucus carota HOM05D006272 ORTHO05D007989 3.4e-42 175.3 112 74.1
CBR_g17090 Chara braunii HOM05D006272 ORTHO05D007989 9.1e-40 167.2 128 60.2
FAN08G1485 Fragaria x ananassa HOM05D006272 ORTHO05D007989 4.5e-39 164.9 148 62.2
SMO134G0173 Selaginella moellendorffii HOM05D006272 ORTHO05D007989 5.0e-38 161.4 112 68.8
MBI15_g12943_MAGBIO Magnolia biondii HOM05D006272 ORTHO05D007989 7.2e-37 157.5 131 59.5
Pp3c1_15150 Physcomitrium patens HOM05D006272 ORTHO05D007989 1.2e-36 156.8 126 60.3
TWI15G0925 Tripterygium wilfordii HOM05D006272 ORTHO05D007989 6.8e-35 151.0 91 81.3
Sed0028033 Sechium edule HOM05D006272 ORTHO05D007989 1.1e-32 143.7 92 76.1
SalBow3G0460 Salvia bowleyana HOM05D006272 ORTHO05D007989 3.5e-31 138.7 89 77.5
AL8G10070 Arabidopsis lyrata HOM05D006272 ORTHO05D007989 1.0e-27 127.1 94 69.1
CARHR258530 Cardamine hirsuta HOM05D006272 ORTHO05D007989 3.0e-27 125.6 140 51.4
PRCOL_00006774 Prasinoderma coloniale HOM05D006272 ORTHO05D007989 2.2e-25 119.4 120 48.3
Cre03.g145587 Chlamydomonas reinhardtii HOM05D006272 ORTHO05D007989 2.7e-23 112.5 121 45.5
MCO16G260 Micromonas commoda HOM05D006272 ORTHO05D007989 4.6e-23 111.7 128 43.8
Hma1.2p1_1643F.1_g295250 Hydrangea macrophylla HOM05D006272 ORTHO05D007989 5.9e-23 111.3 69 79.7
Hma1.2p1_2351F.1_g320495 Hydrangea macrophylla HOM05D006272 ORTHO05D007989 5.9e-23 111.3 69 79.7
QL12p034838 Quercus lobata HOM05D006272 ORTHO05D007989 6.1e-20 101.3 69 76.8
Dinv09172 Davidia involucrata HOM05D006272 ORTHO05D007989 3.0e-14 82.4 39 89.7
Gohir.A03G017120 Gossypium hirsutum HOM05D006272 ORTHO05D007989 4.3e-13 78.6 40 85.0
Cpa.g.c35589.1 Carica papaya HOM05D006272 ORTHO05D007989 5.6e-13 78.2 48 72.9
MBI15_g10564_MAGBIO Magnolia biondii HOM05D006272 ORTHO05D007989 5.6e-13 78.2 40 85.0
SalBow3G4540 Salvia bowleyana HOM05D006272 ORTHO05D007989 1.2e-12 77.0 55 65.5
Cre02.g095077 Chlamydomonas reinhardtii HOM05D006272 ORTHO05D007989 4.7e-12 75.1 109 33.9
TPR.G22672 Trifolium pratense HOM05D006272 ORTHO05D007989 3.2e-08 62.4 42 59.5


User provided reference genes

Program Settings