Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030971 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 7.6e-92 340.5 175 100.0
vmacro17822 Vaccinium macrocarpon HOM05D004708 ORTHO05D005573 2.8e-78 295.4 175 86.9
Actinidia19193 Actinidia chinensis HOM05D004708 ORTHO05D005573 1.1e-77 293.5 175 85.7
Rhsim08G0118600 Rhododendron simsii HOM05D004708 ORTHO05D005573 2.2e-75 285.8 175 84.0
Dinv13509 Davidia involucrata HOM05D004708 ORTHO05D005573 4.7e-73 278.1 175 84.6
CSS0040556 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 5.1e-72 274.6 173 80.9
Thecc.03G010200 Theobroma cacao HOM05D004708 ORTHO05D005573 1.1e-71 273.5 175 77.7
Duzib084G0089 Durio zibethinus HOM05D004708 ORTHO05D005573 1.7e-70 269.6 172 77.3
QL06p046600 Quercus lobata HOM05D004708 ORTHO05D005573 3.7e-70 268.5 161 84.5
Cpa.g.sc6.137 Carica papaya HOM05D004708 ORTHO05D005573 7.0e-69 264.2 174 74.7
Ciclev10026600m.g Citrus clementina HOM05D004708 ORTHO05D005573 7.0e-69 264.2 172 77.3
Atru.chr3.607 Acer truncatum HOM05D004708 ORTHO05D005573 2.0e-68 262.7 167 80.2
Gohir.A09G170800 Gossypium hirsutum HOM05D004708 ORTHO05D005573 2.0e-68 262.7 167 77.8
Nitab4.5_0000136g0310 Nicotiana tabacum HOM05D004708 ORTHO05D005573 2.0e-68 262.7 170 77.1
COL.COLO4_34048 Corchorus olitorius HOM05D004708 ORTHO05D005573 2.6e-68 262.3 175 74.3
Prupe.7G156900 Prunus persica HOM05D004708 ORTHO05D005573 3.5e-68 261.9 172 77.3
MD02G1144700 Malus domestica HOM05D004708 ORTHO05D005573 4.5e-68 261.5 172 76.2
Peaxi162Scf00008g03516 Petunia axillaris HOM05D004708 ORTHO05D005573 5.9e-68 261.2 171 77.2
Gorai.006G188300 Gossypium raimondii HOM05D004708 ORTHO05D005573 1.0e-67 260.4 167 76.6
GSVIVG01025946001 Vitis vinifera HOM05D004708 ORTHO05D005573 1.3e-67 260.0 168 77.4
Cc07_g09720 Coffea canephora HOM05D004708 ORTHO05D005573 1.7e-67 259.6 170 75.9
HanXRQChr09g0261341 Helianthus annuus HOM05D004708 ORTHO05D005573 1.7e-67 259.6 163 82.2
Sopen02g013670 Solanum pennellii HOM05D004708 ORTHO05D005573 1.7e-67 259.6 174 74.1
AT2G18250 Arabidopsis thaliana HOM05D004708 ORTHO05D005573 3.8e-67 258.5 158 80.4
Thecc.01G032800 Theobroma cacao HOM05D004708 ORTHO05D005573 5.0e-67 258.1 161 78.9
GSVIVG01018936001 Vitis vinifera HOM05D004708 ORTHO05D005573 5.0e-67 258.1 168 77.4
ClCG05G006010 Citrullus lanatus HOM05D000319 ORTHO05D000903 6.5e-67 257.7 167 76.0
Potri.005G121200 Populus trichocarpa HOM05D004708 ORTHO05D005573 6.5e-67 257.7 173 74.6
MD15G1258400 Malus domestica HOM05D004708 ORTHO05D005573 1.5e-66 256.5 175 74.3
MSTRG.23511 Avicennia marina HOM05D004708 ORTHO05D005573 2.5e-66 255.8 171 74.3
Solyc02g062640.4 Solanum lycopersicum HOM05D004708 ORTHO05D005573 5.5e-66 254.6 168 75.0
Carub.0003s3243 Capsella rubella HOM05D004708 ORTHO05D005573 7.2e-66 254.2 170 74.7
Lsat_1_v5_gn_4_148240 Lactuca sativa HOM05D004708 ORTHO05D005573 7.2e-66 254.2 158 80.4
Gorai.008G067200 Gossypium raimondii HOM05D004708 ORTHO05D005573 9.4e-66 253.8 161 77.6
Hma1.2p1_0224F.1_g094553 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 9.4e-66 253.8 168 76.8
Manes.01G136850 Manihot esculenta HOM05D004708 ORTHO05D005573 9.4e-66 253.8 170 73.5
CAN.G111.48 Capsicum annuum HOM05D004708 ORTHO05D005573 1.2e-65 253.4 168 75.0
MELO3C006648.2 Cucumis melo HOM05D004708 ORTHO05D005573 1.2e-65 253.4 167 74.3
PGSC0003DMG400015508 Solanum tuberosum HOM05D004708 ORTHO05D005573 1.6e-65 253.1 166 75.3
AL3G51520 Arabidopsis lyrata HOM05D004708 ORTHO05D005573 2.1e-65 252.7 158 78.5
AUR62004070 Chenopodium quinoa HOM05D004708 ORTHO05D005573 6.1e-65 251.1 164 73.8
COL.COLO4_22050 Corchorus olitorius HOM05D004708 ORTHO05D005573 6.1e-65 251.1 168 78.0
Thhalv10022875m.g Eutrema salsugineum HOM05D004708 ORTHO05D005573 6.1e-65 251.1 164 76.2
Aa31LG8G15760 Aethionema arabicum HOM05D004708 ORTHO05D005573 8.0e-65 250.8 159 76.7
Hund16439 Selenicereus undatus HOM05D004708 ORTHO05D005573 8.0e-65 250.8 163 73.0
CsaV3_3G014460 Cucumis sativus L. HOM05D004708 ORTHO05D005573 1.0e-64 250.4 168 73.8
CiPaw.01G043700 Carya illinoinensis HOM05D004708 ORTHO05D005573 1.4e-64 250.0 172 73.3
Duzib264G1087 Durio zibethinus HOM05D004708 ORTHO05D005573 1.4e-64 250.0 158 78.5
Aqoxy3G01739 Aquilegia oxysepala HOM05D004708 ORTHO05D005573 1.8e-64 249.6 170 74.1
TWI53G1618 Tripterygium wilfordii HOM05D004708 ORTHO05D005573 1.8e-64 249.6 169 73.4
Sc16g0002660 Simmondsia chinensis HOM05D004708 ORTHO05D005573 2.3e-64 249.2 173 71.1
Hma1.2p1_0789F.1_g218250 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 3.0e-64 248.8 178 73.0
Aqoxy5G01592 Aquilegia oxysepala HOM05D004708 ORTHO05D005573 3.9e-64 248.4 156 78.8
ECA232G2192 Erigeron canadensis HOM05D004708 ORTHO05D005573 3.9e-64 248.4 154 81.8
CARHR108820 Cardamine hirsuta HOM05D004708 ORTHO05D005573 5.2e-64 248.1 161 75.2
FvH4_1g13011 Fragaria vesca HOM05D004708 ORTHO05D005573 5.2e-64 248.1 174 71.8
DCAR_023857 Daucus carota HOM05D004708 ORTHO05D005573 6.7e-64 247.7 159 76.1
Manes.02G095600 Manihot esculenta HOM05D004708 ORTHO05D005573 6.7e-64 247.7 170 73.5
Migut.H00962 Erythranthe guttata HOM05D004708 ORTHO05D005573 8.8e-64 247.3 167 76.6
RcHm_v2.0_Chr2g0101171 Rosa chinensis HOM05D004708 ORTHO05D005573 1.1e-63 246.9 174 71.8
Sp3g31670 Schrenkiella parvula HOM05D004708 ORTHO05D005573 1.1e-63 246.9 164 74.4
DCAR_032374 Daucus carota HOM05D004708 ORTHO05D005573 1.5e-63 246.5 159 75.5
SalBow6G2211 Salvia bowleyana HOM05D004708 ORTHO05D005573 1.5e-63 246.5 173 71.7
BcaB07g31677 Brassica carinata HOM05D004708 ORTHO05D005573 3.3e-63 245.4 163 73.6
SGA_v2.0_scaffold258G45779 Striga asiatica HOM05D004708 ORTHO05D005573 5.7e-63 244.6 162 77.2
BcaC04g22917 Brassica carinata HOM05D004708 ORTHO05D005573 1.7e-62 243.0 164 72.6
AUR62007583 Chenopodium quinoa HOM05D004708 ORTHO05D005573 2.2e-62 242.7 156 75.6
BcaC06g36391 Brassica carinata HOM05D004708 ORTHO05D005573 3.7e-62 241.9 161 73.9
BolC9t54282H Brassica oleracea HOM05D004708 ORTHO05D005573 3.7e-62 241.9 164 72.0
BcaB03g16615 Brassica carinata HOM05D004708 ORTHO05D005573 4.8e-62 241.5 164 73.2
PGR119G0658 Punica granatum HOM05D004708 ORTHO05D005573 4.8e-62 241.5 174 71.8
CAN.G1645.15 Capsicum annuum HOM05D004708 ORTHO05D005573 8.2e-62 240.7 166 73.5
Medtr5g020680 Medicago truncatula HOM05D004708 ORTHO05D005573 8.2e-62 240.7 170 71.2
Lj2g0001027 Lotus japonicus HOM05D002605 ORTHO05D002842 1.1e-61 240.4 171 69.0
A07p02450 Brassica napus HOM05D004708 ORTHO05D005573 2.4e-61 239.2 161 73.3
BraA07t28041Z Brassica rapa HOM05D004708 ORTHO05D005573 2.4e-61 239.2 161 73.3
BolC7t40861H Brassica oleracea HOM05D004708 ORTHO05D005573 4.1e-61 238.4 161 73.3
EL10Ac6g15543 Beta vulgaris HOM05D004708 ORTHO05D005573 9.1e-61 237.3 165 72.1
C07p04600 Brassica napus HOM05D004708 ORTHO05D005573 9.1e-61 237.3 161 72.7
unitig_21.g20250 Utricularia gibba HOM05D004708 ORTHO05D005573 9.1e-61 237.3 166 72.9
TPR.G2405 Trifolium pratense HOM05D004708 ORTHO05D005573 1.2e-60 236.9 170 68.8
Lalb_Chr05g0212721 Lupinus albus HOM05D004708 ORTHO05D005573 1.6e-60 236.5 159 74.2
Ca_24863_v3 Cicer arietinum L. HOM05D004708 ORTHO05D005573 2.0e-60 236.1 158 74.7
Lsat_1_v5_gn_2_77221 Lactuca sativa HOM05D004708 ORTHO05D005573 2.0e-60 236.1 153 78.4
Ca_21297_v3 Cicer arietinum L. HOM05D004708 ORTHO05D005573 2.6e-60 235.7 159 74.2
Psat2g158360 Pisum sativum HOM05D004708 ORTHO05D005573 2.6e-60 235.7 170 67.6
Hund13990 Selenicereus undatus HOM05D004708 ORTHO05D005573 3.5e-60 235.3 169 66.9
THA.LOC104807464 Tarenaya hassleriana HOM05D004708 ORTHO05D005573 4.5e-60 235.0 201 62.7
Medtr8g073890 Medicago truncatula HOM05D004708 ORTHO05D005573 5.9e-60 234.6 155 76.1
VMungo1215G3002 Vigna mungo HOM05D004708 ORTHO05D005573 5.9e-60 234.6 174 66.7
arahy.Tifrunner.gnm1.ann1.CZ32YF Arachis hypogaea HOM05D004708 ORTHO05D005573 7.7e-60 234.2 170 70.0
Glyma.01G173050 Glycine max HOM05D004708 ORTHO05D005573 2.9e-59 232.3 159 71.7
ATR0796G251 Amborella trichopoda HOM05D004708 ORTHO05D005573 1.5e-58 229.9 152 73.7
arahy.Tifrunner.gnm1.ann1.Y7U3HW Arachis hypogaea HOM05D004708 ORTHO05D005573 1.5e-58 229.9 170 68.2
arahy.Tifrunner.gnm1.ann1.V6C6W3 Arachis hypogaea HOM05D004708 ORTHO05D005573 1.9e-58 229.6 170 68.8
PSO764G0091 Papaver somniferum HOM05D004708 ORTHO05D005573 3.2e-58 228.8 155 74.8
Sabra05G0099900 Salix brachista HOM05D004708 ORTHO05D005573 3.2e-58 228.8 218 58.7
Phvul.002G032200 Phaseolus vulgaris HOM05D004708 ORTHO05D005573 1.2e-57 226.9 158 69.0
MD15G1258500 Malus domestica HOM05D004708 ORTHO05D005573 2.1e-57 226.1 172 66.3
Zm00001eb231510 Zea mays HOM05D004708 ORTHO05D005573 2.1e-57 226.1 171 63.7
FAN25G0668 Fragaria x ananassa HOM05D004708 ORTHO05D005573 4.7e-57 224.9 167 67.1
arahy.Tifrunner.gnm1.ann1.KFYL3R Arachis hypogaea HOM05D004708 ORTHO05D005573 2.3e-56 222.6 170 68.2
CSS0019358 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 2.3e-56 222.6 117 100.0
PSO339G0290 Papaver somniferum HOM05D004708 ORTHO05D005573 3.0e-56 222.2 153 73.9
ECA238G4849 Erigeron canadensis HOM05D004708 ORTHO05D005573 5.2e-56 221.5 153 71.9
Dinv39998 Davidia involucrata HOM05D004708 ORTHO05D005573 6.8e-56 221.1 170 70.0
FAN19G0555 Fragaria x ananassa HOM05D004708 ORTHO05D005573 6.8e-56 221.1 207 59.4
TAR624G0473 Trochodendron aralioides HOM05D004708 ORTHO05D005573 8.8e-56 220.7 155 70.3
Gohir.A12G064100 Gossypium hirsutum HOM05D004708 ORTHO05D005573 4.4e-55 218.4 161 70.2
FAN21G0333 Fragaria x ananassa HOM05D004708 ORTHO05D005573 1.7e-54 216.5 166 63.9
SEGI_37374 Sequoiadendron giganteum HOM05D004708 ORTHO05D005573 2.8e-54 215.7 158 68.4
Os07g0179400 Oryza sativa ssp. japonica HOM05D004708 ORTHO05D005573 8.3e-54 214.2 159 66.7
Gohir.D09G166500 Gossypium hirsutum HOM05D004708 ORTHO05D005573 7.0e-53 211.1 172 64.5
Hma1.2p1_1820F.1_g304110 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 1.6e-52 209.9 136 80.1
HPP92_014750 Vanilla planifolia HOM05D004708 ORTHO05D005573 1.6e-52 209.9 168 62.5
CDE12G0116 Ceratophyllum demersum HOM05D004708 ORTHO05D005573 3.8e-51 205.3 149 67.8
CDE01G0816 Ceratophyllum demersum HOM05D004708 ORTHO05D005573 1.1e-50 203.8 149 68.5
Glyma.02G276900 Glycine max HOM05D004708 ORTHO05D005573 9.4e-50 200.7 130 73.1
SMO357G0013 Selaginella moellendorffii HOM05D004708 ORTHO05D005573 1.8e-48 196.4 154 64.3
SMO318G0001 Selaginella moellendorffii HOM05D004708 ORTHO05D005573 5.2e-48 194.9 170 60.0
Pp3c18_16890 Physcomitrium patens HOM05D004708 ORTHO05D005573 1.2e-47 193.7 161 59.6
BcaC04g22919 Brassica carinata HOM05D004708 ORTHO05D005573 1.3e-46 190.3 192 55.7
A09p11790 Brassica napus HOM05D004708 ORTHO05D005573 6.3e-46 188.0 131 71.0
CARHR108850 Cardamine hirsuta HOM05D004708 ORTHO05D005573 9.1e-45 184.1 120 75.0
FvH4_3g26020 Fragaria vesca HOM05D004708 ORTHO05D005573 1.6e-44 183.3 138 63.8
C09p13900 Brassica napus HOM05D004708 ORTHO05D005573 4.5e-44 181.8 166 59.0
Gohir.D12G064000 Gossypium hirsutum HOM05D004708 ORTHO05D005573 1.9e-42 176.4 104 77.9
Lj2A454G55 Lonicera japonica HOM05D004708 ORTHO05D005573 4.2e-42 175.3 143 65.7
Mapoly0065s0018 Marchantia polymorpha HOM05D004708 ORTHO05D005573 5.6e-42 174.9 165 57.6
Nitab4.5_0009165g0010 Nicotiana tabacum HOM05D000001 ORTHO05D013582 6.8e-40 167.9 106 83.0
Peaxi162Scf00130g00618 Petunia axillaris HOM05D004708 ORTHO05D005573 2.4e-37 159.5 170 51.2
Zm00001eb301320 Zea mays HOM05D004708 ORTHO05D005573 3.2e-37 159.1 154 54.5
FAN11G2897 Fragaria x ananassa HOM05D004708 ORTHO05D009899 9.2e-37 157.5 170 51.2
PSO731G0046 Papaver somniferum HOM05D004708 ORTHO05D005573 2.7e-36 156.0 112 73.2
PSO384G2349 Papaver somniferum HOM05D004708 ORTHO05D005573 3.9e-35 152.1 154 57.1
Actinidia33865 Actinidia chinensis HOM05D004708 ORTHO05D005573 1.1e-34 150.6 94 87.2
CBR_g4476 Chara braunii HOM05D003322 ORTHO05D004228 9.5e-34 147.5 151 49.0
Nn7g38122 Nelumbo nucifera HOM05D004708 ORTHO05D005573 9.5e-34 147.5 98 68.4
Os02g0134000 Oryza sativa ssp. japonica HOM05D004708 ORTHO05D005573 3.4e-31 139.0 105 64.8
CAN.G2875.1 Capsicum annuum HOM05D004708 ORTHO05D005573 7.5e-31 137.9 107 69.2
AagrBONN_evm.TU.Sc2ySwM_228.2017 Anthoceros agrestis HOM05D004708 ORTHO05D005573 8.3e-30 134.4 110 65.5
BraA09t36827Z Brassica rapa HOM05D004708 ORTHO05D005573 4.1e-29 132.1 103 68.0
FAN26G2067 Fragaria x ananassa HOM05D004708 ORTHO05D005573 6.6e-27 124.8 84 66.7
Pp3c18_18790 Physcomitrium patens HOM05D004708 ORTHO05D005573 1.1e-26 124.0 161 44.7
arahy.Tifrunner.gnm1.ann1.W5EA8A Arachis hypogaea HOM05D004708 ORTHO05D005573 3.4e-23 112.5 88 68.2
Cre13.g590550 Chlamydomonas reinhardtii HOM05D004708 ORTHO05D005573 1.9e-21 106.7 135 39.3
AagrBONN_evm.TU.Sc2ySwM_368.1168 Anthoceros agrestis HOM05D004708 ORTHO05D005573 7.1e-21 104.8 70 75.7
HanXRQChr17g0534461 Helianthus annuus HOM05D004708 ORTHO05D005573 7.1e-21 104.8 57 82.5
CAN.G53.14 Capsicum annuum HOM05D004708 ORTHO05D005573 2.3e-19 99.8 60 75.0
C09p74780 Brassica napus HOM05D004708 ORTHO05D005573 1.6e-17 93.6 59 79.7
C09p74830 Brassica napus HOM05D004708 ORTHO05D005573 1.6e-17 93.6 59 79.7
SGA_v2.0_scaffold276G46612 Striga asiatica HOM05D004708 ORTHO05D005573 4.7e-17 92.0 118 50.8
Cfa027114 Carpinus fangiana HOM05D004708 ORTHO05D005573 2.0e-15 86.7 212 28.8
MCO08G231 Micromonas commoda HOM05D004708 ORTHO05D005573 5.8e-15 85.1 152 35.5
CAN.G53.15 Capsicum annuum HOM05D004708 ORTHO05D005573 2.4e-13 79.7 58 75.9
PRCOL_00004729 Prasinoderma coloniale HOM05D004708 ORTHO05D005573 4.6e-12 75.5 151 33.8
BcaC06g36392 Brassica carinata HOM05D000492 ORTHO05D005571 1.0e-11 74.3 52 73.1
Oeu044133.1 Olea europaea HOM05D004708 ORTHO05D005573 3.9e-11 72.4 43 81.4
Actinidia12710 Actinidia chinensis HOM05D004708 ORTHO05D005573 2.5e-10 69.7 46 73.9
arahy.Tifrunner.gnm1.ann1.7621NS Arachis hypogaea HOM05D054750 ORTHO05D005573 4.9e-06 55.5 32 81.2


User provided reference genes

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