Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030969 Camellia sinensis var. sinensis HOM05D006098 ORTHO05D007470 6.8e-265 916.8 462 100.0
vmacro00080 Vaccinium macrocarpon HOM05D006098 ORTHO05D007470 9.4e-206 720.3 477 78.8
Rhsim11G0035500 Rhododendron simsii HOM05D006098 ORTHO05D007470 4.3e-203 711.4 504 75.0
Rhsim11G0034900 Rhododendron simsii HOM05D006098 ORTHO05D007470 1.0e-199 700.3 426 83.1
Actinidia01257 Actinidia chinensis HOM05D006098 ORTHO05D007470 6.5e-199 697.6 460 79.1
Actinidia14735 Actinidia chinensis HOM05D006098 ORTHO05D007470 9.4e-198 693.7 461 78.3
Dinv41811 Davidia involucrata HOM05D006098 ORTHO05D007470 2.7e-197 692.2 482 76.6
Actinidia32783 Actinidia chinensis HOM05D006098 ORTHO05D007470 1.4e-188 663.3 462 76.4
Cc08_g05440 Coffea canephora HOM05D006098 ORTHO05D007470 2.3e-180 636.0 425 76.0
Dinv37422 Davidia involucrata HOM05D006098 ORTHO05D007470 5.2e-180 634.8 416 79.8
Actinidia18166 Actinidia chinensis HOM05D006098 ORTHO05D007470 9.8e-179 630.6 395 81.8
Solyc08g075520.4 Solanum lycopersicum HOM05D006098 ORTHO05D007470 1.0e-175 620.5 462 70.1
Oeu057164.1 Olea europaea HOM05D006098 ORTHO05D007470 8.5e-175 617.5 422 75.4
Peaxi162Scf00053g00062 Petunia axillaris HOM05D006098 ORTHO05D007470 1.9e-174 616.3 462 69.3
CAN.G1026.8 Capsicum annuum HOM05D006098 ORTHO05D007470 5.5e-174 614.8 462 68.8
Oeu042192.1 Olea europaea HOM05D006098 ORTHO05D007470 7.2e-174 614.4 466 69.1
Oeu042191.1 Olea europaea HOM05D006098 ORTHO05D007470 1.6e-173 613.2 466 69.1
SalBow4G1396 Salvia bowleyana HOM05D006098 ORTHO05D007470 1.0e-172 610.5 402 76.4
GSVIVG01036872001 Vitis vinifera HOM05D006098 ORTHO05D007470 1.8e-172 609.8 409 76.8
Peaxi162Scf00045g00071 Petunia axillaris HOM05D006098 ORTHO05D007470 2.3e-172 609.4 429 72.3
Nn1g09368 Nelumbo nucifera HOM05D006098 ORTHO05D007470 5.2e-172 608.2 447 70.7
TAR629G3250 Trochodendron aralioides HOM05D006098 ORTHO05D007470 6.8e-172 607.8 383 80.4
DCAR_028369 Daucus carota HOM05D006098 ORTHO05D007470 1.2e-171 607.1 374 81.0
Gorai.008G220000 Gossypium raimondii HOM05D006098 ORTHO05D007470 3.4e-171 605.5 444 72.3
Oeu046790.1 Olea europaea HOM05D006098 ORTHO05D007470 5.7e-171 604.7 431 72.9
Duzib205G1615 Durio zibethinus HOM05D006098 ORTHO05D007470 1.7e-170 603.2 392 77.3
COL.COLO4_10360 Corchorus olitorius HOM05D006098 ORTHO05D007470 2.2e-170 602.8 442 71.5
Thecc.03G318000 Theobroma cacao HOM05D006098 ORTHO05D007470 2.8e-170 602.4 385 78.4
ECA246G0847 Erigeron canadensis HOM05D006098 ORTHO05D007470 4.9e-170 601.7 399 77.2
Atru.chr8.2640 Acer truncatum HOM05D006098 ORTHO05D007470 1.1e-169 600.5 382 79.1
Nitab4.5_0000985g0060 Nicotiana tabacum HOM05D006098 ORTHO05D007470 1.8e-169 599.7 419 73.3
Lsat_1_v5_gn_3_19721 Lactuca sativa HOM05D006098 ORTHO05D007470 4.5e-168 595.1 387 77.3
Lj8A337G13 Lonicera japonica HOM05D006098 ORTHO05D007470 6.6e-167 591.3 360 83.1
Manes.15G184300 Manihot esculenta HOM05D006098 ORTHO05D007470 1.1e-166 590.5 462 67.1
PGSC0003DMG400018483 Solanum tuberosum HOM05D006098 ORTHO05D007470 1.1e-166 590.5 433 71.1
Nn7g37397 Nelumbo nucifera HOM05D006098 ORTHO05D007470 1.9e-166 589.7 404 76.2
Cpa.g.sc71.63 Carica papaya HOM05D006098 ORTHO05D007470 4.3e-166 588.6 440 69.8
Potri.003G033300 Populus trichocarpa HOM05D006098 ORTHO05D007470 4.3e-166 588.6 374 77.3
Nitab4.5_0011712g0010 Nicotiana tabacum HOM05D006098 ORTHO05D007470 7.3e-166 587.8 420 71.7
Nitab4.5_0000898g0120 Nicotiana tabacum HOM05D006098 ORTHO05D007470 9.5e-166 587.4 457 68.1
MSTRG.1762 Avicennia marina HOM05D006098 ORTHO05D007470 2.8e-165 585.9 424 72.6
Sabra01G0135500 Salix brachista HOM05D006098 ORTHO05D007470 6.1e-165 584.7 378 77.5
EL10Ac5g12579 Beta vulgaris HOM05D006098 ORTHO05D007470 1.4e-164 583.6 443 68.8
Solyc08g005560.3 Solanum lycopersicum HOM05D006098 ORTHO05D007470 1.4e-164 583.6 421 72.0
Sopen08g001580 Solanum pennellii HOM05D006098 ORTHO05D007470 1.8e-164 583.2 430 70.9
Migut.A00537 Erythranthe guttata HOM05D006098 ORTHO05D007470 2.3e-164 582.8 466 67.0
Potri.001G193400 Populus trichocarpa HOM05D006098 ORTHO05D007470 1.2e-163 580.5 395 73.7
CAN.G884.9 Capsicum annuum HOM05D006098 ORTHO05D007470 2.0e-163 579.7 423 70.7
AUR62010477 Chenopodium quinoa HOM05D006098 ORTHO05D007470 2.0e-163 579.7 457 66.5
Gorai.004G178500 Gossypium raimondii HOM05D006098 ORTHO05D007470 7.5e-163 577.8 457 66.7
Nitab4.5_0000030g0370 Nicotiana tabacum HOM05D006098 ORTHO05D007470 7.5e-163 577.8 440 69.5
ECA240G1264 Erigeron canadensis HOM05D006098 ORTHO05D007470 1.7e-162 576.6 449 68.8
PGR031G3371 Punica granatum HOM05D006098 ORTHO05D007470 6.4e-162 574.7 445 70.1
CAN.G884.14 Capsicum annuum HOM05D006098 ORTHO05D007470 8.3e-162 574.3 423 69.7
RcHm_v2.0_Chr6g0304491 Rosa chinensis HOM05D006098 ORTHO05D007470 1.1e-161 573.9 449 67.7
HanXRQChr13g0411151 Helianthus annuus HOM05D006098 ORTHO05D007470 1.4e-161 573.5 456 68.2
MBI15_g33454_MAGBIO Magnolia biondii HOM05D006098 ORTHO05D007470 1.4e-161 573.5 402 73.6
HanXRQChr17g0537231 Helianthus annuus HOM05D006098 ORTHO05D007470 5.4e-161 571.6 416 72.1
SGA_v2.0_scaffold111G31352 Striga asiatica HOM05D006098 ORTHO05D007470 5.4e-161 571.6 393 74.0
FvH4_2g37220 Fragaria vesca HOM05D006098 ORTHO05D007470 1.2e-160 570.5 441 68.5
HanXRQChr03g0081041 Helianthus annuus HOM05D006098 ORTHO05D007470 1.6e-160 570.1 397 74.3
FAN20G1855 Fragaria x ananassa HOM05D006098 ORTHO05D007470 5.9e-160 568.2 446 67.5
Gohir.A08G150000 Gossypium hirsutum HOM05D006098 ORTHO05D007470 5.9e-160 568.2 432 68.5
FAN27G2650 Fragaria x ananassa HOM05D006098 ORTHO05D007470 7.8e-160 567.8 441 68.3
Nitab4.5_0001175g0140 Nicotiana tabacum HOM05D006098 ORTHO05D007470 1.7e-159 566.6 467 65.1
Ah.12g058500 Amaranthus hybridus HOM05D006098 ORTHO05D007470 1.5e-158 563.5 458 65.1
AUR62030416 Chenopodium quinoa HOM05D006098 ORTHO05D007470 1.2e-157 560.5 488 61.9
Duzib068G0239 Durio zibethinus HOM05D006098 ORTHO05D007470 1.0e-156 557.4 457 65.4
FAN15G0890 Fragaria x ananassa HOM05D006098 ORTHO05D007470 3.1e-156 555.8 449 66.1
Lsat_1_v5_gn_5_57121 Lactuca sativa HOM05D006098 ORTHO05D007470 9.2e-153 544.3 477 63.3
SalBow8G2199 Salvia bowleyana HOM05D006098 ORTHO05D007470 1.2e-152 543.9 422 68.2
Sabra03G0019100 Salix brachista HOM05D006098 ORTHO05D007470 1.7e-151 540.0 481 60.3
THA.LOC104811082 Tarenaya hassleriana HOM05D006098 ORTHO05D007470 5.0e-151 538.5 431 66.8
ATR0568G039 Amborella trichopoda HOM05D006098 ORTHO05D007470 2.1e-149 533.1 374 71.9
Gohir.D12G205100 Gossypium hirsutum HOM05D006098 ORTHO05D007470 4.0e-148 528.9 333 79.9
PSO675G7908 Papaver somniferum HOM05D006098 ORTHO05D007470 1.2e-147 527.3 381 71.4
PSO541G2197 Papaver somniferum HOM05D006098 ORTHO05D007470 1.5e-147 526.9 392 69.4
Gohir.A12G202400 Gossypium hirsutum HOM05D006098 ORTHO05D007470 9.8e-147 524.2 333 79.3
unitig_37.g12121 Utricularia gibba HOM05D006098 ORTHO05D007470 3.8e-138 495.7 423 62.4
CDE01G0744 Ceratophyllum demersum HOM05D006098 ORTHO05D007470 3.2e-137 492.7 378 67.2
AT4G19160 Arabidopsis thaliana HOM05D006098 ORTHO05D007470 5.1e-135 485.3 448 58.9
Sopen08g024170 Solanum pennellii HOM05D006098 ORTHO05D007470 1.9e-134 483.4 384 66.4
AL7G34930 Arabidopsis lyrata HOM05D006098 ORTHO05D007470 5.6e-134 481.9 374 66.8
PGSC0003DMG400016110 Solanum tuberosum HOM05D006098 ORTHO05D007470 2.1e-133 479.9 384 66.1
Aa31LG6G1850 Aethionema arabicum HOM05D006098 ORTHO05D007470 4.0e-132 475.7 451 59.0
Carub.0007s2199 Capsella rubella HOM05D006098 ORTHO05D007470 2.0e-131 473.4 458 58.1
Peaxi162Scf00876g00435 Petunia axillaris HOM05D006098 ORTHO05D007470 1.1e-129 467.6 373 66.2
SEGI_14227 Sequoiadendron giganteum HOM05D006098 ORTHO05D007470 4.6e-128 462.2 368 63.0
Manes.17G016300 Manihot esculenta HOM05D006098 ORTHO05D007470 3.1e-124 449.5 375 64.0
Sp7g17860 Schrenkiella parvula HOM05D006098 ORTHO05D007470 1.5e-123 447.2 466 55.8
CARHR226030 Cardamine hirsuta HOM05D006098 ORTHO05D007470 2.3e-119 433.3 494 53.2
BcaC09g51434 Brassica carinata HOM05D006098 ORTHO05D007470 5.1e-119 432.2 383 62.1
BcaNung04007 Brassica carinata HOM05D006098 ORTHO05D007470 1.1e-118 431.0 387 62.0
C01p13160 Brassica napus HOM05D006098 ORTHO05D007470 2.5e-118 429.9 384 62.2
BolC1t01289H Brassica oleracea HOM05D006098 ORTHO05D007470 2.5e-118 429.9 466 55.6
Thhalv10025127m.g Eutrema salsugineum HOM05D006098 ORTHO05D007470 7.4e-118 428.3 471 55.4
BraA01t01058Z Brassica rapa HOM05D006098 ORTHO05D007470 2.1e-117 426.8 400 60.8
A01p11120 Brassica napus HOM05D006098 ORTHO05D007470 4.8e-117 425.6 413 59.3
A08p14200 Brassica napus HOM05D006098 ORTHO05D007470 5.8e-107 392.1 451 51.7
BraA08t33414Z Brassica rapa HOM05D006098 ORTHO05D007470 5.8e-107 392.1 451 51.7
BcaC01g00601 Brassica carinata HOM05D006098 ORTHO05D007470 4.9e-106 389.0 376 58.2
C03p81800 Brassica napus HOM05D006098 ORTHO05D007470 1.9e-105 387.1 371 58.8
BolC3t20457H Brassica oleracea HOM05D006098 ORTHO05D007470 1.9e-105 387.1 371 58.8
BcaB04g18531 Brassica carinata HOM05D006098 ORTHO05D007470 2.7e-104 383.3 397 55.2
CAN.G947.35 Capsicum annuum HOM05D006098 ORTHO05D007470 1.1e-102 377.9 374 59.1
Gohir.D08G171101 Gossypium hirsutum HOM05D006098 ORTHO05D007470 2.2e-93 347.1 234 74.4
MSTRG.13909 Avicennia marina HOM05D006098 ORTHO05D007470 2.6e-91 340.1 289 62.6
FAN27G0800 Fragaria x ananassa HOM05D006098 ORTHO05D007470 1.4e-87 327.8 239 72.4
AagrBONN_evm.TU.Sc2ySwM_368.631 Anthoceros agrestis HOM05D006098 ORTHO05D007470 3.3e-70 270.0 379 40.9
Rhsim11G0035700 Rhododendron simsii HOM05D006098 ORTHO05D007470 1.0e-66 258.5 416 44.0
HanXRQChr05g0158621 Helianthus annuus HOM05D006098 ORTHO05D007470 3.2e-65 253.4 161 82.0
FvH4_2g37180 Fragaria vesca HOM05D006098 ORTHO05D007470 1.5e-57 228.0 139 80.6
SMO364G0549 Selaginella moellendorffii HOM05D006098 ORTHO05D007470 9.5e-57 225.3 378 37.8
Pp3c12_14620 Physcomitrium patens HOM05D006098 ORTHO05D007470 4.0e-55 219.9 424 34.9
Hund11040 Selenicereus undatus HOM05D006098 ORTHO05D007470 1.0e-47 195.3 448 34.6
HanXRQChr11g0344761 Helianthus annuus HOM05D006098 ORTHO05D007470 6.8e-47 192.6 131 75.6
HanXRQChr09g0271561 Helianthus annuus HOM05D006098 ORTHO05D007470 1.7e-45 188.0 124 75.8
Oeu015533.1 Olea europaea HOM05D006098 ORTHO05D007470 2.0e-43 181.0 140 67.1
Eucgr.D02551 Eucalyptus grandis HOM05D006098 ORTHO05D007470 2.3e-42 177.6 117 75.2
Oeu042198.1 Olea europaea HOM05D006098 ORTHO05D007470 5.0e-42 176.4 234 47.4
Eucgr.D02550 Eucalyptus grandis HOM05D006098 ORTHO05D007470 4.4e-38 163.3 122 68.9
Pp3c4_2130 Physcomitrium patens HOM05D006098 ORTHO05D007470 2.4e-28 131.0 312 31.4
RcHm_v2.0_Chr4g0402301 Rosa chinensis HOM05D006098 ORTHO05D007470 3.2e-28 130.6 126 57.9
Peaxi162Scf00527g00718 Petunia axillaris HOM05D006098 ORTHO05D007470 4.1e-28 130.2 196 41.3
HanXRQChr11g0344831 Helianthus annuus HOM05D006098 ORTHO05D007470 1.9e-25 121.3 78 75.6
Prupe.1G352900 Prunus persica HOM05D006098 ORTHO05D007470 3.8e-21 107.1 79 68.4
Cre14.g621850 Chlamydomonas reinhardtii HOM05D006098 ORTHO05D007470 4.2e-12 77.0 246 27.2
Aa31sc19G30 Aethionema arabicum HOM05D006098 ORTHO05D007470 6.0e-11 73.2 48 72.9
Ah.12g062800 Amaranthus hybridus HOM05D007414 ORTHO05D009482 3.0e-10 70.9 382 23.6
Mapoly0007s0139 Marchantia polymorpha HOM05D007414 ORTHO05D009482 3.9e-10 70.5 421 24.7
CSS0046796 Camellia sinensis var. sinensis HOM05D006098 ORTHO05D007470 8.7e-10 69.3 96 43.8
Sc11g0006450 Simmondsia chinensis HOM05D007414 ORTHO05D009482 2.5e-09 67.8 267 27.0
AUR62032647 Chenopodium quinoa HOM05D007414 ORTHO05D009482 4.3e-09 67.0 383 23.2
AUR62026859 Chenopodium quinoa HOM05D007414 ORTHO05D009482 2.8e-08 64.3 269 25.3
Cc02_g30210 Coffea canephora HOM05D007414 ORTHO05D009482 2.8e-08 64.3 278 27.0
Aa31LG3G3710 Aethionema arabicum HOM05D006098 ORTHO05D007470 1.1e-07 62.4 57 57.9
arahy.Tifrunner.gnm1.ann1.XZAR1L Arachis hypogaea HOM05D007414 ORTHO05D009482 1.1e-07 62.4 353 23.5
EL10Ac2g02800 Beta vulgaris HOM05D007414 ORTHO05D009482 1.4e-07 62.0 373 23.9
Potri.001G027600 Populus trichocarpa HOM05D007414 ORTHO05D009482 1.4e-07 62.0 384 24.5
AagrBONN_evm.TU.Sc2ySwM_362.1466 Anthoceros agrestis HOM05D007414 ORTHO05D009482 2.4e-07 61.2 409 22.7
Manes.11G006000 Manihot esculenta HOM05D007414 ORTHO05D009482 3.1e-07 60.8 379 23.7
Medtr3g014680 Medicago truncatula HOM05D007414 ORTHO05D009482 3.1e-07 60.8 296 25.7
GSVIVG01013487001 Vitis vinifera HOM05D007414 ORTHO05D009482 3.1e-07 60.8 385 23.1
TWI15G0498 Tripterygium wilfordii HOM05D007414 ORTHO05D009482 4.0e-07 60.5 376 23.1
Thecc.10G154500 Theobroma cacao HOM05D007414 ORTHO05D009482 6.9e-07 59.7 383 23.5
Atru.chr12.1333 Acer truncatum HOM05D007414 ORTHO05D009482 9.0e-07 59.3 241 27.4
arahy.Tifrunner.gnm1.ann1.GMDI7B Arachis hypogaea HOM05D007414 ORTHO05D009482 9.0e-07 59.3 349 22.6
Ciclev10028543m.g Citrus clementina HOM05D007414 ORTHO05D009482 9.0e-07 59.3 356 24.2
COL.COLO4_20658 Corchorus olitorius HOM05D007414 ORTHO05D009482 9.0e-07 59.3 282 24.8
Sabra01G0020000 Salix brachista HOM05D007414 ORTHO05D009482 9.0e-07 59.3 397 25.2
PSO384G0147 Papaver somniferum HOM05D007414 ORTHO05D009482 1.2e-06 58.9 352 23.6
Hma1.2p1_1202F.1_g266840 Hydrangea macrophylla HOM05D007414 ORTHO05D009482 1.5e-06 58.5 376 22.9
Pp3c11_910 Physcomitrium patens HOM05D007414 ORTHO05D009482 1.5e-06 58.5 403 22.8
Dinv22037 Davidia involucrata HOM05D007414 ORTHO05D009482 2.0e-06 58.2 399 23.8
Eucgr.G03234 Eucalyptus grandis HOM05D007414 ORTHO05D009482 2.0e-06 58.2 452 22.8
PSO339G0457 Papaver somniferum HOM05D007414 ORTHO05D009482 2.0e-06 58.2 400 22.2
PGSC0003DMG400018334 Solanum tuberosum HOM05D007414 ORTHO05D009482 3.4e-06 57.4 279 26.2
Nitab4.5_0004955g0030 Nicotiana tabacum HOM05D007414 ORTHO05D009482 4.5e-06 57.0 288 26.0
Potri.003G196200 Populus trichocarpa HOM05D007414 ORTHO05D009482 4.5e-06 57.0 288 23.6
QL04p017831 Quercus lobata HOM05D007414 ORTHO05D009482 7.6e-06 56.2 386 23.3
TAR623G0974 Trochodendron aralioides HOM05D007414 ORTHO05D009482 7.6e-06 56.2 241 27.0
FvH4_7g03070 Fragaria vesca HOM05D006097 ORTHO05D008538 9.9e-06 55.8 286 24.5
FAN06G2659 Fragaria x ananassa HOM05D007414 ORTHO05D009482 9.9e-06 55.8 286 24.5
RcHm_v2.0_Chr1g0324301 Rosa chinensis HOM05D007414 ORTHO05D009482 9.9e-06 55.8 399 21.8


User provided reference genes

Program Settings