Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030964 Camellia sinensis var. sinensis HOM05D003920 ORTHO05D004877 1.1e-240 836.3 424 100.0
QL04p007133 Quercus lobata HOM05D003920 ORTHO05D004877 1.8e-147 526.6 426 67.4
Dinv43454 Davidia involucrata HOM05D003920 ORTHO05D004877 1.3e-145 520.4 327 81.3
Thecc.01G412100 Theobroma cacao HOM05D003920 ORTHO05D004877 3.9e-142 508.8 426 65.0
RcHm_v2.0_Chr1g0315781 Rosa chinensis HOM05D003920 ORTHO05D004877 4.3e-141 505.4 420 66.4
Rhsim07G0054700 Rhododendron simsii HOM05D003920 ORTHO05D004877 1.7e-140 503.4 324 80.2
Ciclev10031666m.g Citrus clementina HOM05D003920 ORTHO05D004877 2.8e-140 502.7 423 61.2
FAN01G3017 Fragaria x ananassa HOM05D003920 ORTHO05D004877 1.4e-139 500.4 333 76.6
Haze_03212 Corylus avellana HOM05D003920 ORTHO05D004877 3.1e-139 499.2 463 62.0
FAN03G2194 Fragaria x ananassa HOM05D003920 ORTHO05D004877 9.1e-139 497.7 333 76.3
Cc02_g27790 Coffea canephora HOM05D003920 ORTHO05D004877 2.6e-138 496.1 406 65.3
Atru.chr11.2647 Acer truncatum HOM05D003920 ORTHO05D004877 5.5e-136 488.4 424 63.4
Prupe.2G011700 Prunus persica HOM05D003920 ORTHO05D004877 1.8e-134 483.4 332 75.0
Manes.10G144700 Manihot esculenta HOM05D003920 ORTHO05D004877 2.3e-134 483.0 327 74.9
FvH4_7g00890 Fragaria vesca HOM05D003920 ORTHO05D004877 3.0e-134 482.6 329 75.4
FAN06G2354 Fragaria x ananassa HOM05D003920 ORTHO05D004877 5.1e-134 481.9 329 75.4
vmacro13655 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 5.1e-134 481.9 390 67.4
Potri.001G268200 Populus trichocarpa HOM05D003920 ORTHO05D004877 1.7e-132 476.9 327 74.6
vmacro08182 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 3.1e-131 472.6 459 61.0
MD02G1313900 Malus domestica HOM05D003920 ORTHO05D004877 2.6e-130 469.5 327 74.9
Lj3g0003225 Lotus japonicus HOM05D003920 ORTHO05D004877 4.5e-130 468.8 329 74.2
Sabra09G0046300 Salix brachista HOM05D003920 ORTHO05D004877 1.3e-129 467.2 327 73.4
Nn2g15431 Nelumbo nucifera HOM05D003920 ORTHO05D004877 2.2e-129 466.5 328 73.2
MD07G1008500 Malus domestica HOM05D003920 ORTHO05D004877 2.9e-129 466.1 327 74.0
Sabra16G0164300 Salix brachista HOM05D003920 ORTHO05D004877 5.0e-129 465.3 327 73.4
Nn7g36164 Nelumbo nucifera HOM05D003920 ORTHO05D004877 1.4e-128 463.8 328 73.5
Medtr3g028190 Medicago truncatula HOM05D003920 ORTHO05D004877 4.2e-128 462.2 327 73.1
Sopen10g011530 Solanum pennellii HOM05D003920 ORTHO05D004877 4.2e-128 462.2 327 73.4
Ca_27172_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 7.2e-128 461.5 327 73.1
Lalb_Chr01g0015291 Lupinus albus HOM05D003920 ORTHO05D004877 1.2e-127 460.7 327 73.1
TAR369G0176 Trochodendron aralioides HOM05D003920 ORTHO05D004877 1.2e-127 460.7 330 73.0
Psat5g204200 Pisum sativum HOM05D003920 ORTHO05D004877 1.6e-127 460.3 327 72.2
Glyma.08G153800 Glycine max HOM05D003920 ORTHO05D004877 2.7e-127 459.5 333 73.3
TPR.G12140 Trifolium pratense HOM05D003920 ORTHO05D004877 2.7e-127 459.5 327 72.5
Peaxi162Scf00428g00618 Petunia axillaris HOM05D003920 ORTHO05D004877 3.6e-127 459.1 327 70.9
DCAR_003208 Daucus carota HOM05D003920 ORTHO05D004877 8.0e-127 458.0 327 73.7
Solyc10g038000.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 8.0e-127 458.0 327 73.1
Potri.009G062600 Populus trichocarpa HOM05D003920 ORTHO05D004877 1.4e-126 457.2 329 72.6
Gohir.D08G038400 Gossypium hirsutum HOM05D003920 ORTHO05D004877 5.2e-126 455.3 327 72.5
ECA248G0446 Erigeron canadensis HOM05D003920 ORTHO05D004877 8.8e-126 454.5 324 73.5
Peaxi162Scf00407g00639 Petunia axillaris HOM05D003920 ORTHO05D004877 1.1e-125 454.1 327 69.7
Aqoxy2G00138 Aquilegia oxysepala HOM05D003920 ORTHO05D004877 1.5e-125 453.8 327 71.3
Gorai.004G036900 Gossypium raimondii HOM05D003920 ORTHO05D004877 3.3e-125 452.6 327 72.2
Glyma.15G272400 Glycine max HOM05D003920 ORTHO05D004877 1.3e-124 450.7 333 71.5
PSO339G5616 Papaver somniferum HOM05D003920 ORTHO05D004877 1.3e-124 450.7 329 70.5
Gohir.A08G027700 Gossypium hirsutum HOM05D003920 ORTHO05D004877 1.7e-124 450.3 327 72.2
Nitab4.5_0000634g0100 Nicotiana tabacum HOM05D003920 ORTHO05D004877 2.8e-124 449.5 325 69.2
PSO384G3532 Papaver somniferum HOM05D003920 ORTHO05D004877 4.8e-124 448.7 329 70.5
Phvul.005G019900 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 8.2e-124 448.0 333 70.3
VMungo1080G0709 Vigna mungo HOM05D003920 ORTHO05D004877 8.2e-124 448.0 333 70.0
HanXRQChr01g0016141 Helianthus annuus HOM05D003920 ORTHO05D004877 7.0e-123 444.9 324 70.4
arahy.Tifrunner.gnm1.ann1.LBVL0K Arachis hypogaea HOM05D003920 ORTHO05D004877 4.5e-122 442.2 324 72.5
arahy.Tifrunner.gnm1.ann1.Z50281 Arachis hypogaea HOM05D003920 ORTHO05D004877 5.9e-122 441.8 328 72.0
Nitab4.5_0011837g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 8.5e-121 438.0 343 67.3
Solyc01g087030.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 8.5e-121 438.0 327 67.9
DCAR_022405 Daucus carota HOM05D003920 ORTHO05D004877 1.9e-120 436.8 327 69.7
Sopen01g034110 Solanum pennellii HOM05D003920 ORTHO05D004877 2.5e-120 436.4 327 67.6
Lsat_1_v5_gn_1_107981 Lactuca sativa HOM05D003920 ORTHO05D004877 3.2e-120 436.0 321 73.5
Gorai.004G173300 Gossypium raimondii HOM05D003920 ORTHO05D004877 1.6e-119 433.7 327 69.4
Lj7A569G59 Lonicera japonica HOM05D003920 ORTHO05D004877 3.6e-119 432.6 336 63.1
Aa31LG10G17420 Aethionema arabicum HOM05D003920 ORTHO05D004877 1.0e-118 431.0 337 67.1
CAN.G709.1 Capsicum annuum HOM05D003920 ORTHO05D004877 1.8e-118 430.3 324 69.4
MBI04_g13623_MAGBIO Magnolia biondii HOM05D003920 ORTHO05D004877 1.8e-118 430.3 329 69.3
Eucgr.J01264 Eucalyptus grandis HOM05D003920 ORTHO05D004877 2.3e-118 429.9 331 69.2
EL10Ac2g04315 Beta vulgaris HOM05D003920 ORTHO05D004877 6.7e-118 428.3 328 68.6
CsaV3_7G031170 Cucumis sativus L. HOM05D003920 ORTHO05D004877 6.7e-118 428.3 423 60.5
AUR62009376 Chenopodium quinoa HOM05D003920 ORTHO05D004877 8.8e-118 427.9 325 68.0
Lj9C630T11 Lonicera japonica HOM05D003920 ORTHO05D004877 2.0e-117 426.8 323 64.7
TWI73G0359 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 2.6e-117 426.4 346 65.6
AL5G46410 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 3.3e-117 426.0 427 57.4
Migut.N01471 Erythranthe guttata HOM05D003920 ORTHO05D004877 4.4e-117 425.6 326 69.6
MELO3C023541.2 Cucumis melo HOM05D003920 ORTHO05D004877 5.7e-117 425.2 423 60.3
Carub.0005s3016 Capsella rubella HOM05D003920 ORTHO05D004877 4.8e-116 422.2 426 55.9
PGR044G2195 Punica granatum HOM05D003920 ORTHO05D004877 6.3e-116 421.8 330 66.4
CDE04G0006 Ceratophyllum demersum HOM05D003920 ORTHO05D004877 1.6e-114 417.2 329 66.3
TAR633G1074 Trochodendron aralioides HOM05D003920 ORTHO05D004877 5.9e-114 415.2 327 63.0
Manes.07G005000 Manihot esculenta HOM05D003920 ORTHO05D004877 7.7e-114 414.8 298 73.2
COL.COLO4_23923 Corchorus olitorius HOM05D003920 ORTHO05D004877 1.3e-113 414.1 322 63.4
Sed0011667 Sechium edule HOM05D003920 ORTHO05D004877 2.9e-113 412.9 329 66.6
ATR0605G260 Amborella trichopoda HOM05D003920 ORTHO05D004877 2.5e-112 409.8 324 67.3
A08p10660 Brassica napus HOM05D003920 ORTHO05D004877 5.5e-112 408.7 331 65.6
BolC8t48154H Brassica oleracea HOM05D003920 ORTHO05D004877 1.2e-111 407.5 332 64.5
BolC8t49780H Brassica oleracea HOM05D003920 ORTHO05D004877 1.6e-111 407.1 332 66.3
CARHR291420 Cardamine hirsuta HOM05D003920 ORTHO05D004877 5.2e-110 402.1 328 65.9
SalBow5G4770 Salvia bowleyana HOM05D003920 ORTHO05D004877 8.8e-110 401.4 328 65.9
Sp1g00020 Schrenkiella parvula HOM05D003920 ORTHO05D004877 1.5e-109 400.6 327 65.7
THA.LOC104827426 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 2.6e-109 399.8 325 65.5
Sc10g0000010 Simmondsia chinensis HOM05D003920 ORTHO05D004877 9.8e-109 397.9 327 65.1
MSTRG.5016 Avicennia marina HOM05D003920 ORTHO05D004877 4.8e-108 395.6 327 67.0
Actinidia24671 Actinidia chinensis HOM05D003920 ORTHO05D004877 6.3e-108 395.2 286 68.5
Thhalv10010518m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 8.3e-108 394.8 327 63.3
BraA08t33064Z Brassica rapa HOM05D003920 ORTHO05D004877 4.1e-107 392.5 327 64.8
TWI53G1741 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 7.0e-107 391.7 367 56.1
Hund03665 Selenicereus undatus HOM05D003920 ORTHO05D004877 1.6e-106 390.6 321 67.3
BcaC07g37767 Brassica carinata HOM05D003920 ORTHO05D004877 2.0e-106 390.2 328 63.1
A08p28590 Brassica napus HOM05D003920 ORTHO05D004877 3.5e-106 389.4 329 64.7
SEGI_34678 Sequoiadendron giganteum HOM05D003920 ORTHO05D004877 4.5e-106 389.0 325 63.7
THA.LOC104819067 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 1.3e-105 387.5 328 63.7
SGA_v2.0_scaffold167G38446 Striga asiatica HOM05D003920 ORTHO05D004877 3.8e-105 386.0 329 63.8
unitig_85.g27216 Utricularia gibba HOM05D003920 ORTHO05D004877 4.7e-103 379.0 327 57.5
HPP92_005768 Vanilla planifolia HOM05D003920 ORTHO05D004877 1.4e-102 377.5 330 62.7
Zm00001eb381600 Zea mays HOM05D003920 ORTHO05D004877 3.0e-102 376.3 342 60.5
Thhalv10021103m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 5.2e-102 375.6 332 61.7
AT3G08505 Arabidopsis thaliana HOM05D003920 ORTHO05D004877 1.5e-101 374.0 327 62.4
Sp3g06990 Schrenkiella parvula HOM05D003920 ORTHO05D004877 4.4e-101 372.5 327 62.7
AUR62023057 Chenopodium quinoa HOM05D003920 ORTHO05D004877 5.7e-101 372.1 298 66.8
AL3G19480 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 7.5e-101 371.7 327 60.9
Carub.0003s0765 Capsella rubella HOM05D003920 ORTHO05D004877 1.3e-100 370.9 326 61.3
Gohir.A08G145200 Gossypium hirsutum HOM05D003920 ORTHO05D004877 1.4e-99 367.5 293 67.9
CARHR082810 Cardamine hirsuta HOM05D003920 ORTHO05D004877 5.9e-98 362.1 327 57.8
ClCG09G004250 Citrullus lanatus HOM05D003920 ORTHO05D004877 5.0e-97 359.0 271 67.9
Gohir.D08G166100 Gossypium hirsutum HOM05D003920 ORTHO05D004877 5.0e-97 359.0 243 68.3
PGR044G2672 Punica granatum HOM05D003920 ORTHO05D004877 1.5e-96 357.5 446 49.3
MSTRG.20593 Avicennia marina HOM05D003920 ORTHO05D004877 2.5e-96 356.7 334 59.9
BcaC07g39147 Brassica carinata HOM05D003920 ORTHO05D004877 2.8e-95 353.2 332 54.8
C08p21410 Brassica napus HOM05D003920 ORTHO05D004877 2.8e-95 353.2 225 70.2
BcaB04g21254 Brassica carinata HOM05D003920 ORTHO05D004877 3.6e-95 352.8 327 59.3
BcaC09g47976 Brassica carinata HOM05D003920 ORTHO05D004877 1.4e-94 350.9 327 57.8
BcaB03g11569 Brassica carinata HOM05D003920 ORTHO05D004877 3.1e-94 349.7 328 57.9
BcaC01g04265 Brassica carinata HOM05D003920 ORTHO05D004877 6.8e-94 348.6 328 57.6
Nitab4.5_0004786g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 2.6e-93 346.7 282 68.4
BraA01t04343Z Brassica rapa HOM05D003920 ORTHO05D004877 4.4e-93 345.9 324 56.8
A03p35650 Brassica napus HOM05D003920 ORTHO05D004877 5.8e-93 345.5 330 57.3
C03p43290 Brassica napus HOM05D003920 ORTHO05D004877 5.8e-93 345.5 325 57.5
BolC3t16599H Brassica oleracea HOM05D003920 ORTHO05D004877 5.8e-93 345.5 325 57.5
BraA03t12740Z Brassica rapa HOM05D003920 ORTHO05D004877 7.5e-93 345.1 330 57.3
Actinidia31057 Actinidia chinensis HOM05D003920 ORTHO05D004877 9.8e-93 344.7 327 63.6
Thhalv10023829m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 1.1e-91 341.3 321 58.9
Potri.004G134400 Populus trichocarpa HOM05D003920 ORTHO05D004877 1.0e-89 334.7 439 47.8
arahy.Tifrunner.gnm1.ann1.3CZ6TN Arachis hypogaea HOM05D003920 ORTHO05D004877 8.6e-89 331.6 339 56.9
Lalb_Chr20g0108061 Lupinus albus HOM05D003920 ORTHO05D004877 4.7e-87 325.9 337 56.1
Aa31LG5G18640 Aethionema arabicum HOM05D003920 ORTHO05D004877 6.2e-87 325.5 208 71.2
Pp3c5_25680 Physcomitrium patens HOM05D003920 ORTHO05D004877 6.2e-87 325.5 324 47.8
Zm00001eb252860 Zea mays HOM05D003920 ORTHO05D004877 6.2e-87 325.5 337 51.3
Peaxi162Scf00148g00610 Petunia axillaris HOM05D003920 ORTHO05D004877 3.1e-86 323.2 317 53.9
Lalb_Chr01g0015331 Lupinus albus HOM05D003920 ORTHO05D004877 6.8e-86 322.0 335 56.7
Nitab4.5_0001299g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 2.2e-84 317.0 267 60.3
Glyma.15G273000 Glycine max HOM05D003920 ORTHO05D004877 1.9e-83 313.9 339 53.4
SMO203G0245 Selaginella moellendorffii HOM05D003920 ORTHO05D004877 2.4e-83 313.5 335 52.8
TPR.G12281 Trifolium pratense HOM05D003920 ORTHO05D004877 4.1e-83 312.8 336 54.8
Sabra04G0083700 Salix brachista HOM05D003920 ORTHO05D004877 5.4e-83 312.4 296 53.7
arahy.Tifrunner.gnm1.ann1.NHZH5I Arachis hypogaea HOM05D003920 ORTHO05D004877 1.6e-82 310.8 352 54.3
VMungo1080G1751 Vigna mungo HOM05D003920 ORTHO05D004877 2.1e-82 310.5 337 54.6
Ca_14370_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 1.7e-81 307.4 338 54.1
Mapoly0042s0020 Marchantia polymorpha HOM05D003920 ORTHO05D004877 2.3e-81 307.0 379 47.8
Medtr3g028170 Medicago truncatula HOM05D003920 ORTHO05D004877 1.9e-80 303.9 336 54.5
Glyma.08G154100 Glycine max HOM05D003920 ORTHO05D004877 3.3e-80 303.1 339 54.6
Lj3g0002246 Lotus japonicus HOM05D003920 ORTHO05D004877 7.3e-80 302.0 336 53.3
Phvul.005G020000 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 1.8e-78 297.4 339 52.2
Psat5g204240 Pisum sativum HOM05D003920 ORTHO05D004877 1.2e-77 294.7 342 50.3
AagrBONN_evm.TU.Sc2ySwM_344.3645 Anthoceros agrestis HOM05D003920 ORTHO05D004877 7.5e-77 292.0 326 52.1
SGA_v2.0_scaffold24G10678 Striga asiatica HOM05D003920 ORTHO05D004877 1.1e-75 288.1 328 48.8
Actinidia36714 Actinidia chinensis HOM05D003920 ORTHO05D004877 2.4e-75 287.0 327 49.5
Nitab4.5_0000254g0170 Nicotiana tabacum HOM05D003920 ORTHO05D004877 2.0e-69 267.3 216 62.0
Sp5g00030 Schrenkiella parvula HOM05D003920 ORTHO05D004877 1.2e-66 258.1 212 59.4
arahy.Tifrunner.gnm1.ann1.YQ2HRW Arachis hypogaea HOM05D003920 ORTHO05D004877 2.0e-61 240.7 334 48.5
arahy.Tifrunner.gnm1.ann1.HIY6S0 Arachis hypogaea HOM05D003920 ORTHO05D004877 2.6e-61 240.4 325 47.7
Nitab4.5_0003190g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.8e-54 217.6 193 58.0
unitig_26.g8826 Utricularia gibba HOM05D003920 ORTHO05D004877 5.3e-54 216.1 321 43.9
Cre06.g278136 Chlamydomonas reinhardtii HOM05D003920 ORTHO05D004877 2.6e-53 213.8 193 47.7
PRCOL_00005356 Prasinoderma coloniale HOM05D003920 ORTHO05D004877 3.1e-46 190.3 205 42.0
Phvul.011G110100 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 7.1e-43 179.1 93 84.9
GSVIVG01032073001 Vitis vinifera HOM05D003920 ORTHO05D004877 1.6e-34 151.4 74 89.2
Oeu039134.1 Olea europaea HOM05D003920 ORTHO05D004877 3.3e-32 143.7 74 86.5
TPR.G31394 Trifolium pratense HOM05D002628 ORTHO05D002785 9.4e-19 99.0 130 36.9
QL04p005704 Quercus lobata HOM05D003920 ORTHO05D004877 1.1e-14 85.5 74 67.6
QL04p032014 Quercus lobata HOM05D003920 ORTHO05D004877 1.5e-13 81.6 38 89.5
QL04p032319 Quercus lobata HOM05D003920 ORTHO05D004877 2.0e-13 81.3 48 72.9


User provided reference genes

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