Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030959 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D004745 3.0e-116 421.8 204 100.0
Actinidia03351 Actinidia chinensis HOM05D002388 ORTHO05D004745 6.0e-80 301.2 204 73.5
Dinv28990 Davidia involucrata HOM05D002388 ORTHO05D004745 3.0e-79 298.9 205 72.2
Dinv25247 Davidia involucrata HOM05D002388 ORTHO05D004745 8.9e-76 287.3 205 71.2
vmacro00293 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 1.5e-70 270.0 205 68.8
vmacro00300 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 1.5e-70 270.0 205 68.8
Hma1.2p1_0572F.1_g181220 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 5.6e-70 268.1 202 66.8
Duzib205G0909 Durio zibethinus HOM05D002388 ORTHO05D004745 2.4e-68 262.7 205 67.3
Atru.chr6.1616 Acer truncatum HOM05D002388 ORTHO05D004745 6.9e-68 261.2 200 65.5
Duzib068G1098 Durio zibethinus HOM05D002388 ORTHO05D004745 2.2e-66 256.1 205 65.9
Cpa.g.sc90.11 Carica papaya HOM05D002388 ORTHO05D004745 2.9e-66 255.8 204 64.7
Potri.003G095600 Populus trichocarpa HOM05D002388 ORTHO05D004745 1.1e-65 253.8 208 64.9
Gohir.A08G154400 Gossypium hirsutum HOM05D002388 ORTHO05D004745 2.4e-65 252.7 205 67.3
Thecc.03G308500 Theobroma cacao HOM05D002388 ORTHO05D004745 3.2e-65 252.3 205 65.4
Gohir.D08G175075 Gossypium hirsutum HOM05D002388 ORTHO05D004745 1.2e-64 250.4 205 66.3
QL12p001291 Quercus lobata HOM05D002388 ORTHO05D004745 7.9e-64 247.7 203 63.5
CANSAT35G0066 Cannabis sativa HOM05D002388 ORTHO05D004745 3.0e-63 245.7 206 64.6
Gorai.004G182900 Gossypium raimondii HOM05D002388 ORTHO05D004745 3.0e-63 245.7 205 65.9
Rhsim11G0019800 Rhododendron simsii HOM05D002388 ORTHO05D004745 1.9e-62 243.0 276 51.4
GSVIVG01013067001 Vitis vinifera HOM05D002388 ORTHO05D004745 4.3e-62 241.9 206 63.1
CiPaw.11G097400 Carya illinoinensis HOM05D002388 ORTHO05D004745 5.6e-62 241.5 204 63.7
Nn1g00186 Nelumbo nucifera HOM05D002388 ORTHO05D004745 5.6e-62 241.5 210 63.3
Manes.15G188200 Manihot esculenta HOM05D002388 ORTHO05D004745 1.6e-61 240.0 206 60.2
Rhsim07G0131100 Rhododendron simsii HOM05D002388 ORTHO05D004745 2.8e-61 239.2 204 64.7
TWI15G0743 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 3.6e-61 238.8 204 61.3
Lj2g0009669 Lotus japonicus HOM05D002388 ORTHO05D004745 4.8e-61 238.4 204 63.2
Potri.001G138200 Populus trichocarpa HOM05D002388 ORTHO05D004745 6.2e-61 238.0 206 60.7
FAN18G3813 Fragaria x ananassa HOM05D002388 ORTHO05D004745 1.1e-60 237.3 205 61.0
FAN18G3398 Fragaria x ananassa HOM05D002388 ORTHO05D004745 1.4e-60 236.9 205 61.0
Ciclev10002550m.g Citrus clementina HOM05D002388 ORTHO05D004745 3.1e-60 235.7 205 61.0
PGSC0003DMG400014808 Solanum tuberosum HOM05D002388 ORTHO05D004745 5.3e-60 235.0 202 59.4
MD06G1025400 Malus domestica HOM05D002388 ORTHO05D004745 6.9e-60 234.6 204 59.8
Nn3g19408 Nelumbo nucifera HOM05D002388 ORTHO05D004745 2.0e-59 233.0 202 58.4
Psat4g121840 Pisum sativum HOM05D002388 ORTHO05D004745 2.0e-59 233.0 204 59.3
Prupe.5G029700 Prunus persica HOM05D002388 ORTHO05D004745 3.4e-59 232.3 204 60.8
Cc08_g03410 Coffea canephora HOM05D002388 ORTHO05D004745 4.5e-59 231.9 205 59.5
Eucgr.E00235 Eucalyptus grandis HOM05D002388 ORTHO05D004745 4.5e-59 231.9 204 58.3
FAN08G3109 Fragaria x ananassa HOM05D002388 ORTHO05D004745 4.5e-59 231.9 205 59.5
FAN04G3082 Fragaria x ananassa HOM05D002388 ORTHO05D004745 7.6e-59 231.1 205 59.0
FAN13G2852 Fragaria x ananassa HOM05D002388 ORTHO05D004745 7.6e-59 231.1 205 59.5
SGA_v2.0_scaffold20G09262 Striga asiatica HOM05D002388 ORTHO05D004745 9.9e-59 230.7 206 57.3
FvH4_5g22890 Fragaria vesca HOM05D002388 ORTHO05D004745 1.3e-58 230.3 212 59.0
RcHm_v2.0_Chr7g0211591 Rosa chinensis HOM05D002388 ORTHO05D004745 2.2e-58 229.6 206 59.2
Haze_08151 Corylus avellana HOM05D002388 ORTHO05D004745 2.9e-58 229.2 219 57.5
COL.COLO4_16959 Corchorus olitorius HOM05D002388 ORTHO05D004745 3.8e-58 228.8 205 60.0
Sc22g0001810 Simmondsia chinensis HOM05D002388 ORTHO05D004745 3.8e-58 228.8 201 58.2
Cfa012499 Carpinus fangiana HOM05D002388 ORTHO05D004745 4.9e-58 228.4 189 60.3
Solyc08g076510.3 Solanum lycopersicum HOM05D002388 ORTHO05D004745 6.4e-58 228.0 202 59.4
Sopen08g025090 Solanum pennellii HOM05D002388 ORTHO05D004745 6.4e-58 228.0 202 59.4
Peaxi162Scf00170g00816 Petunia axillaris HOM05D002388 ORTHO05D004745 8.4e-58 227.6 202 57.4
Ah.12g055410 Amaranthus hybridus HOM05D002388 ORTHO05D004745 1.1e-57 227.3 205 57.6
THA.LOC104814421 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 1.1e-57 227.3 201 58.7
Ca_22658_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 1.4e-57 226.9 204 57.4
Nitab4.5_0000529g0040 Nicotiana tabacum HOM05D002388 ORTHO05D004745 3.2e-57 225.7 202 56.4
Cfa012514 Carpinus fangiana HOM05D002388 ORTHO05D004745 5.5e-57 224.9 206 59.2
Sabra01G0106900 Salix brachista HOM05D002388 ORTHO05D008833 5.5e-57 224.9 222 55.9
TWI60G0128 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 9.3e-57 224.2 204 58.8
THA.LOC104798489 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 1.2e-56 223.8 206 56.8
Gohir.D03G175500 Gossypium hirsutum HOM05D002388 ORTHO05D004745 3.5e-56 222.2 207 58.0
EL10Ac5g12028 Beta vulgaris HOM05D002388 ORTHO05D004745 4.6e-56 221.9 202 60.4
TPR.G8093 Trifolium pratense HOM05D002388 ORTHO05D004745 4.6e-56 221.9 204 58.8
TPR.G3315 Trifolium pratense HOM05D002388 ORTHO05D004745 6.0e-56 221.5 204 57.4
AUR62018656 Chenopodium quinoa HOM05D002388 ORTHO05D004745 1.0e-55 220.7 205 59.0
Gorai.003G184500 Gossypium raimondii HOM05D002388 ORTHO05D004745 3.0e-55 219.2 207 57.5
Nitab4.5_0001595g0030 Nicotiana tabacum HOM05D002388 ORTHO05D004745 3.9e-55 218.8 202 55.4
Hund14363 Selenicereus undatus HOM05D002388 ORTHO05D004745 3.9e-55 218.8 204 60.3
Ca_25190_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 6.7e-55 218.0 206 56.8
PGR042G0491 Punica granatum HOM05D002388 ORTHO05D004745 6.7e-55 218.0 206 58.3
MSTRG.13744 Avicennia marina HOM05D002388 ORTHO05D004745 8.7e-55 217.6 202 57.9
CsaV3_3G001460 Cucumis sativus L. HOM05D002388 ORTHO05D004745 8.7e-55 217.6 204 58.8
arahy.Tifrunner.gnm1.ann1.DQ9IRR Arachis hypogaea HOM05D002388 ORTHO05D004745 1.1e-54 217.2 204 57.4
arahy.Tifrunner.gnm1.ann1.JAYF1A Arachis hypogaea HOM05D002388 ORTHO05D004745 1.1e-54 217.2 204 57.4
Thhalv10008414m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 2.5e-54 216.1 208 55.3
AUR62007343 Chenopodium quinoa HOM05D002388 ORTHO05D004745 3.3e-54 215.7 201 58.7
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 7.4e-54 214.5 203 55.7
Ciclev10002623m.g Citrus clementina HOM05D002388 ORTHO05D004745 9.6e-54 214.2 202 58.4
Oeu028869.2 Olea europaea HOM05D002388 ORTHO05D004745 2.1e-53 213.0 263 49.0
Cfa012512 Carpinus fangiana HOM05D002388 ORTHO05D004745 4.8e-53 211.8 204 56.9
Cfa021255 Carpinus fangiana HOM05D002388 ORTHO05D004745 4.8e-53 211.8 204 56.9
Lalb_Chr16g0381151 Lupinus albus HOM05D002388 ORTHO05D004745 6.2e-53 211.5 204 54.9
AT1G32260 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 1.1e-52 210.7 203 55.2
Lsat_1_v5_gn_6_3520 Lactuca sativa HOM05D002388 ORTHO05D004745 1.8e-52 209.9 207 55.1
MSTRG.1999 Avicennia marina HOM05D002388 ORTHO05D004745 2.4e-52 209.5 207 56.0
Glyma.01G015300 Glycine max HOM05D002388 ORTHO05D004745 2.4e-52 209.5 206 56.8
Haze_08172 Corylus avellana HOM05D002388 ORTHO05D004745 3.1e-52 209.1 221 54.3
Gohir.A03G000041 Gossypium hirsutum HOM05D002388 ORTHO05D004745 5.3e-52 208.4 207 55.1
ClCG10G001380 Citrullus lanatus HOM05D002388 ORTHO05D004745 9.0e-52 207.6 204 57.4
Carub.0001s3059 Capsella rubella HOM05D002388 ORTHO05D004745 1.5e-51 206.8 204 54.9
Glyma.09G207100 Glycine max HOM05D002388 ORTHO05D004745 1.5e-51 206.8 205 56.6
Psat2g138920 Pisum sativum HOM05D002388 ORTHO05D004745 1.5e-51 206.8 204 55.9
Aa31LG2G13740 Aethionema arabicum HOM05D002388 ORTHO05D004745 1.7e-50 203.4 206 53.4
PSO339G4108 Papaver somniferum HOM05D002388 ORTHO05D004745 3.8e-50 202.2 206 51.9
Medtr5g029600 Medicago truncatula HOM05D002388 ORTHO05D004745 6.5e-50 201.4 203 55.7
VMungo1215G2489 Vigna mungo HOM05D002388 ORTHO05D004745 8.4e-50 201.1 204 53.9
Lalb_Chr09g0325541 Lupinus albus HOM05D002388 ORTHO05D004745 1.4e-49 200.3 214 51.9
A09p33880 Brassica napus HOM05D002388 ORTHO05D004745 1.9e-49 199.9 209 53.1
C05p31720 Brassica napus HOM05D002388 ORTHO05D004745 1.9e-49 199.9 208 54.3
BolC5t31898H Brassica oleracea HOM05D002388 ORTHO05D004745 1.9e-49 199.9 208 54.3
BraA09t38936Z Brassica rapa HOM05D002388 ORTHO05D004745 1.9e-49 199.9 209 53.1
Migut.E00774 Erythranthe guttata HOM05D002388 ORTHO05D004745 2.5e-49 199.5 209 53.6
CARHR031630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 3.2e-49 199.1 202 54.5
Phvul.002G137900 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 7.1e-49 198.0 206 52.9
BcaC05g27267 Brassica carinata HOM05D002388 ORTHO05D004745 1.2e-48 197.2 208 53.8
Sabra03G0064500 Salix brachista HOM05D002388 ORTHO05D004745 1.6e-48 196.8 331 39.9
Medtr8g066470 Medicago truncatula HOM05D002388 ORTHO05D004745 2.7e-48 196.1 211 50.7
Sp4g17700 Schrenkiella parvula HOM05D002388 ORTHO05D004745 2.7e-48 196.1 206 50.5
BcaB07g32907 Brassica carinata HOM05D002388 ORTHO05D004745 3.5e-48 195.7 208 51.4
Aa31LG9G15470 Aethionema arabicum HOM05D002388 ORTHO05D004745 4.6e-48 195.3 204 52.0
BcaC02g11653 Brassica carinata HOM05D002388 ORTHO05D004745 1.3e-47 193.7 202 52.0
C04p12700 Brassica napus HOM05D002388 ORTHO05D004745 1.3e-47 193.7 202 52.0
BolC4t22918H Brassica oleracea HOM05D002388 ORTHO05D004745 1.3e-47 193.7 202 52.0
Haze_08150 Corylus avellana HOM05D002388 ORTHO05D004745 1.3e-47 193.7 156 64.1
BcaB02g09426 Brassica carinata HOM05D002388 ORTHO05D004745 8.7e-47 191.0 202 51.5
ECA233G5493 Erigeron canadensis HOM05D002388 ORTHO05D004745 8.7e-47 191.0 204 53.9
A05p10250 Brassica napus HOM05D002388 ORTHO05D004745 1.5e-46 190.3 202 52.0
BraA05t19965Z Brassica rapa HOM05D002388 ORTHO05D004745 1.5e-46 190.3 202 52.0
Sp1g27940 Schrenkiella parvula HOM05D002388 ORTHO05D004745 1.5e-46 190.3 208 50.5
Ciclev10003612m.g Citrus clementina HOM05D002388 ORTHO05D004745 9.6e-46 187.6 205 53.2
Ciclev10003879m.g Citrus clementina HOM05D002388 ORTHO05D004745 4.8e-45 185.3 205 52.7
Thhalv10017272m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 4.8e-45 185.3 206 48.1
HanXRQChr13g0419911 Helianthus annuus HOM05D002388 ORTHO05D004745 4.8e-45 185.3 210 52.4
SalBow1G6210 Salvia bowleyana HOM05D002388 ORTHO05D004745 1.8e-44 183.3 206 51.0
AL4G31530 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 2.6e-43 179.5 202 50.0
HanXRQChr02g0049371 Helianthus annuus HOM05D002388 ORTHO05D004745 2.6e-43 179.5 202 50.5
Haze_09168 Corylus avellana HOM05D002388 ORTHO05D004745 4.5e-43 178.7 159 58.5
CARHR129630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 7.6e-43 177.9 203 46.8
AT2G35480 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 1.0e-42 177.6 202 48.5
Sed0016521 Sechium edule HOM05D002388 ORTHO05D004745 1.0e-42 177.6 208 47.6
Carub.0004s1717 Capsella rubella HOM05D002388 ORTHO05D004745 1.7e-42 176.8 202 49.0
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 5.0e-42 175.3 192 51.0
Lsat_1_v5_gn_6_95801 Lactuca sativa HOM05D002388 ORTHO05D004745 1.4e-41 173.7 227 47.1
CsaV3_3G048910 Cucumis sativus L. HOM05D002388 ORTHO05D004745 1.9e-41 173.3 208 48.1
VMungo0251G2329 Vigna mungo HOM05D002388 ORTHO05D004745 3.2e-41 172.6 206 48.1
PSO384G0605 Papaver somniferum HOM05D002388 ORTHO05D004745 7.2e-41 171.4 177 51.4
Phvul.003G283700 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 1.3e-39 167.2 205 48.8
PGR042G2052 Punica granatum HOM05D002388 ORTHO05D004745 4.3e-38 162.2 208 48.1
Ciclev10003570m.g Citrus clementina HOM05D002388 ORTHO05D004745 9.7e-38 161.0 120 67.5
DCAR_004282 Daucus carota HOM05D002388 ORTHO05D004745 2.4e-36 156.4 154 53.2
Zm00001eb208800 Zea mays HOM05D002388 ORTHO05D004745 2.0e-35 153.3 209 46.9
HPP92_025448 Vanilla planifolia HOM05D002388 ORTHO05D004745 2.6e-35 152.9 205 45.9
CAN.G1298.37 Capsicum annuum HOM05D002388 ORTHO05D004745 2.9e-34 149.4 170 48.2
DCAR_008237 Daucus carota HOM05D002388 ORTHO05D004745 8.5e-34 147.9 163 49.1
ECA240G1207 Erigeron canadensis HOM05D002388 ORTHO05D004745 7.9e-32 141.4 182 47.8
CDE02G3148 Ceratophyllum demersum HOM05D002388 ORTHO05D004745 1.0e-31 141.0 130 56.9
Lj8A306G57 Lonicera japonica HOM05D002388 ORTHO05D004745 1.4e-31 140.6 160 50.0
Hma1.2p1_0870F.1_g230820 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 2.3e-31 139.8 125 60.8
ClCG09G011710 Citrullus lanatus HOM05D002388 ORTHO05D004745 5.1e-31 138.7 210 41.9
ATR0829G180 Amborella trichopoda HOM05D002388 ORTHO05D004745 2.0e-30 136.7 177 47.5
Ciclev10003604m.g Citrus clementina HOM05D002388 ORTHO05D004745 4.3e-30 135.6 160 48.8
Hund11196 Selenicereus undatus HOM05D002388 ORTHO05D004745 4.3e-30 135.6 164 51.2
SEGI_33523 Sequoiadendron giganteum HOM05D002388 ORTHO05D004745 1.3e-29 134.0 143 52.4
Pp3c21_10750 Physcomitrium patens HOM05D002388 ORTHO05D004745 3.7e-29 132.5 168 48.2
MELO3C013831.2 Cucumis melo HOM05D002388 ORTHO05D004745 2.6e-27 126.3 142 50.0
Pp3c18_19000 Physcomitrium patens HOM05D002388 ORTHO05D004745 4.5e-27 125.6 90 64.4
Mapoly0149s0010 Marchantia polymorpha HOM05D002388 ORTHO05D004745 5.9e-27 125.2 121 52.9
AagrBONN_evm.TU.Sc2ySwM_362.667 Anthoceros agrestis HOM05D002388 ORTHO05D004745 4.2e-25 119.0 94 57.4
SMO347G0656 Selaginella moellendorffii HOM05D002388 ORTHO05D004745 9.4e-25 117.9 142 46.5
Os02g0127900 Oryza sativa ssp. japonica HOM05D002388 ORTHO05D004745 7.0e-20 101.7 158 43.0
Actinidia07899 Actinidia chinensis HOM05D002388 ORTHO05D004745 7.7e-19 98.2 73 67.1
Sed0007566 Sechium edule HOM05D002388 ORTHO05D004745 2.9e-18 96.3 204 37.3
TPR.G3332 Trifolium pratense HOM05D000188 ORTHO05D000362 4.4e-14 82.4 73 50.7
AL1G46410 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 8.2e-13 78.2 123 43.1
Haze_08149 Corylus avellana HOM05D007538 ORTHO05D009464 1.8e-12 77.0 64 60.9
Lj8C306G7 Lonicera japonica HOM05D002388 ORTHO05D004745 9.1e-12 74.7 41 90.2
Hma1.2p1_0572F.1_g181210 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 5.9e-11 72.0 41 82.9
Hma1.2p1_3278F.1_g334816 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 5.9e-11 72.0 41 82.9
SHI07361 Sapria himalayana HOM05D002388 ORTHO05D000131 2.9e-10 69.7 78 47.4
Haze_08158 Corylus avellana HOM05D002388 ORTHO05D004745 1.1e-09 67.8 81 46.9
SHI07360 Sapria himalayana HOM05D002388 ORTHO05D000001 3.2e-09 66.2 52 57.7
MELO3C003432.2 Cucumis melo HOM05D002388 ORTHO05D004745 2.7e-08 63.2 67 49.3
BcaC01g02570 Brassica carinata HOM05D002388 ORTHO05D004745 6.1e-08 62.0 104 39.4
BolC3t18589H Brassica oleracea HOM05D002388 ORTHO05D004745 6.1e-08 62.0 104 39.4
CBR_g48716 Chara braunii HOM05D002388 ORTHO05D004745 2.3e-07 60.1 151 29.8
BcaC05g25932 Brassica carinata HOM05D002388 ORTHO05D004745 8.8e-07 58.2 104 38.5
C05p18840 Brassica napus HOM05D002388 ORTHO05D004745 8.8e-07 58.2 104 38.5


User provided reference genes

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