Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030953 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 2.9e-45 184.9 96 100.0
CSS0036898 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 2.1e-22 109.0 93 63.4
CSS0038022 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 2.1e-22 109.0 93 63.4
Rhsim12G0063900 Rhododendron simsii HOM05D007096 ORTHO05D008288 8.6e-21 103.6 105 59.0
Nn4g23168 Nelumbo nucifera HOM05D007096 ORTHO05D008288 3.1e-18 95.1 94 56.4
CiPaw.05G135100 Carya illinoinensis HOM05D007096 ORTHO05D008288 6.8e-18 94.0 96 56.2
Haze_12011 Corylus avellana HOM05D007096 ORTHO05D008288 8.9e-18 93.6 96 59.4
Nn3g17242 Nelumbo nucifera HOM05D007096 ORTHO05D008288 8.9e-18 93.6 94 54.3
Cfa008979 Carpinus fangiana HOM05D007096 ORTHO05D008288 4.4e-17 91.3 96 57.3
Manes.05G101400 Manihot esculenta HOM05D007096 ORTHO05D008288 4.9e-16 87.8 96 55.2
TAR374G0516 Trochodendron aralioides HOM05D007096 ORTHO05D008288 8.3e-16 87.0 92 53.3
CiPaw.06G085100 Carya illinoinensis HOM05D007096 ORTHO05D008288 4.1e-15 84.7 96 53.1
Manes.01G185500 Manihot esculenta HOM05D007096 ORTHO05D008288 5.4e-15 84.3 96 53.1
TAR622G0633 Trochodendron aralioides HOM05D000618 ORTHO05D000454 5.4e-15 84.3 90 57.8
DCAR_031024 Daucus carota HOM05D007096 ORTHO05D008288 9.2e-15 83.6 96 52.1
Thecc.02G346100 Theobroma cacao HOM05D007096 ORTHO05D008288 1.6e-14 82.8 98 53.1
TAR629G1384 Trochodendron aralioides HOM05D000618 ORTHO05D000454 1.6e-14 82.8 89 55.1
Ciclev10033178m.g Citrus clementina HOM05D007096 ORTHO05D008288 2.7e-14 82.0 97 51.5
Gohir.D12G168200 Gossypium hirsutum HOM05D007096 ORTHO05D008288 3.5e-14 81.6 96 52.1
Gorai.008G181100 Gossypium raimondii HOM05D007096 ORTHO05D008288 3.5e-14 81.6 96 52.1
Prupe.1G274800 Prunus persica HOM05D007096 ORTHO05D008288 3.5e-14 81.6 98 51.0
RcHm_v2.0_Chr4g0439851 Rosa chinensis HOM05D007096 ORTHO05D008288 3.5e-14 81.6 97 53.6
Gohir.A12G165100 Gossypium hirsutum HOM05D007096 ORTHO05D008288 7.8e-14 80.5 96 51.0
Potri.010G169300 Populus trichocarpa HOM05D007096 ORTHO05D008288 7.8e-14 80.5 96 52.1
Duzib268G0913 Durio zibethinus HOM05D007096 ORTHO05D008288 1.0e-13 80.1 97 50.5
Sabra08G0063800 Salix brachista HOM05D007096 ORTHO05D008288 1.3e-13 79.7 94 52.1
TAR371G0768 Trochodendron aralioides HOM05D007096 ORTHO05D008288 3.0e-13 78.6 95 49.5
Ciclev10023845m.g Citrus clementina HOM05D007096 ORTHO05D008288 1.5e-12 76.3 89 53.9
Prupe.5G193600 Prunus persica HOM05D007096 ORTHO05D008288 2.5e-12 75.5 95 50.5
Gohir.A05G183700 Gossypium hirsutum HOM05D007096 ORTHO05D008288 3.3e-12 75.1 97 46.4
Gohir.D02G125800 Gossypium hirsutum HOM05D007096 ORTHO05D008288 4.3e-12 74.7 96 50.0
Gorai.005G141500 Gossypium raimondii HOM05D007096 ORTHO05D008288 7.3e-12 73.9 96 49.0
Thecc.03G087500 Theobroma cacao HOM05D007096 ORTHO05D008288 7.3e-12 73.9 97 51.5
PGSC0003DMG400023201 Solanum tuberosum HOM05D007096 ORTHO05D008288 9.6e-12 73.6 89 49.4
Manes.14G078100 Manihot esculenta HOM05D007096 ORTHO05D008288 1.6e-11 72.8 93 47.3
Gorai.009G324600 Gossypium raimondii HOM05D007096 ORTHO05D008288 2.8e-11 72.0 97 44.3
CSS0038065 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 3.6e-11 71.6 93 47.3
Gohir.D05G304900 Gossypium hirsutum HOM05D007096 ORTHO05D008288 3.6e-11 71.6 97 44.3
CiPaw.12G013300 Carya illinoinensis HOM05D007096 ORTHO05D008288 4.7e-11 71.2 86 51.2
RcHm_v2.0_Chr7g0181441 Rosa chinensis HOM05D007096 ORTHO05D008288 4.7e-11 71.2 86 51.2
QL10p017020 Quercus lobata HOM05D007096 ORTHO05D008288 6.2e-11 70.9 86 51.2
CiPaw.11G044600 Carya illinoinensis HOM05D007096 ORTHO05D008288 1.1e-10 70.1 87 51.7
Potri.008G086100 Populus trichocarpa HOM05D007096 ORTHO05D008288 1.1e-10 70.1 96 47.9
Atru.chr9.225 Acer truncatum HOM05D007096 ORTHO05D008288 1.4e-10 69.7 86 53.5
Glyma.17G100200 Glycine max HOM05D007096 ORTHO05D008288 1.4e-10 69.7 91 51.6
Nitab4.5_0000145g0050 Nicotiana tabacum HOM05D007096 ORTHO05D008288 1.4e-10 69.7 86 50.0
Ah.02g129680 Amaranthus hybridus HOM05D007096 ORTHO05D008288 1.8e-10 69.3 96 43.8
Sabra10G0129100 Salix brachista HOM05D007096 ORTHO05D008288 6.8e-10 67.4 96 45.8
Cc00_g23090 Coffea canephora HOM05D007096 ORTHO05D008288 8.9e-10 67.0 95 46.3
Glyma.06G194000 Glycine max HOM05D007096 ORTHO05D008288 1.2e-09 66.6 96 45.8
Gohir.A03G101000 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.2e-09 66.6 96 44.8
Lalb_Chr04g0256051 Lupinus albus HOM05D015099 ORTHO05D008288 1.2e-09 66.6 96 41.7
Manes.06G092300 Manihot esculenta HOM05D007096 ORTHO05D008288 1.2e-09 66.6 95 45.3
Lj4g0000471 Lotus japonicus HOM05D007096 ORTHO05D008288 1.5e-09 66.2 89 46.1
Glyma.04G169400 Glycine max HOM05D007096 ORTHO05D008288 2.0e-09 65.9 95 45.3
Lalb_Chr10g0098271 Lupinus albus HOM05D015099 ORTHO05D008288 2.0e-09 65.9 93 40.9
ClCG11G009950 Citrullus lanatus HOM05D007096 ORTHO05D008288 5.8e-09 64.3 97 41.2
COL.COLO4_09292 Corchorus olitorius HOM05D007096 ORTHO05D008288 7.6e-09 63.9 99 48.5
Lsat_1_v5_gn_5_19601 Lactuca sativa HOM05D007096 ORTHO05D008288 7.6e-09 63.9 88 45.5
Oeu047297.1 Olea europaea HOM05D007096 ORTHO05D008288 7.6e-09 63.9 96 47.9
Phvul.009G187200 Phaseolus vulgaris HOM05D007096 ORTHO05D008288 7.6e-09 63.9 89 43.8
FAN13G0716 Fragaria x ananassa HOM05D007096 ORTHO05D008288 9.9e-09 63.5 85 49.4
FAN08G2460 Fragaria x ananassa HOM05D007096 ORTHO05D008288 1.3e-08 63.2 85 49.4
PGSC0003DMG400018456 Solanum tuberosum HOM05D007096 ORTHO05D008288 1.3e-08 63.2 98 48.0
CsaV3_2G010680 Cucumis sativus L. HOM05D007096 ORTHO05D008288 2.9e-08 62.0 98 42.9
Gohir.D04G191800 Gossypium hirsutum HOM05D007096 ORTHO05D008288 3.8e-08 61.6 97 41.2
Peaxi162Scf00222g00814 Petunia axillaris HOM05D007096 ORTHO05D008288 3.8e-08 61.6 78 48.7
COL.COLO4_23015 Corchorus olitorius HOM05D007096 ORTHO05D008288 4.9e-08 61.2 80 53.8
Phvul.003G190100 Phaseolus vulgaris HOM05D007096 ORTHO05D008288 4.9e-08 61.2 92 46.7
Gohir.A04G147500 Gossypium hirsutum HOM05D007096 ORTHO05D008288 6.4e-08 60.8 97 41.2
Peaxi162Scf00911g00042 Petunia axillaris HOM05D007096 ORTHO05D008288 6.4e-08 60.8 94 41.5
Lsat_1_v5_gn_9_15420 Lactuca sativa HOM05D007096 ORTHO05D008288 8.4e-08 60.5 99 45.5
Gorai.008G193000 Gossypium raimondii HOM05D007096 ORTHO05D008288 1.1e-07 60.1 97 44.3
Solyc05g007650.1 Solanum lycopersicum HOM05D007096 ORTHO05D008288 1.4e-07 59.7 98 48.0
Eucgr.B03446 Eucalyptus grandis HOM05D007096 ORTHO05D008288 1.9e-07 59.3 97 46.4
Gohir.D12G179900 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.9e-07 59.3 97 43.3
Gorai.012G187200 Gossypium raimondii HOM05D007096 ORTHO05D008288 1.9e-07 59.3 97 40.2
DCAR_016556 Daucus carota HOM05D007096 ORTHO05D008288 2.4e-07 58.9 89 41.6
Migut.L01293 Erythranthe guttata HOM05D007096 ORTHO05D008288 4.2e-07 58.2 99 44.4
Gohir.A12G177500 Gossypium hirsutum HOM05D007096 ORTHO05D008288 4.2e-07 58.2 90 44.4
Lj1g0007220 Lotus japonicus HOM05D007096 ORTHO05D008288 4.2e-07 58.2 86 46.5
arahy.Tifrunner.gnm1.ann1.2U9IP4 Arachis hypogaea HOM05D007096 ORTHO05D008288 7.1e-07 57.4 88 43.2
Sed0002990 Sechium edule HOM05D007096 ORTHO05D008288 7.1e-07 57.4 96 41.7
Glyma.02G107400 Glycine max HOM05D015099 ORTHO05D008288 1.2e-06 56.6 109 41.3
THA.LOC104822126 Tarenaya hassleriana HOM05D009494 ORTHO05D011604 2.7e-06 55.5 77 44.2
Dinv19962 Davidia involucrata HOM05D007096 ORTHO05D008288 3.5e-06 55.1 72 51.4
BraA02t06659Z Brassica rapa HOM05D009494 ORTHO05D011604 4.6e-06 54.7 111 36.0
CARHR062540 Cardamine hirsuta HOM05D009494 ORTHO05D011604 6.0e-06 54.3 110 33.6
Glyma.05G026700 Glycine max HOM05D007096 ORTHO05D008288 6.0e-06 54.3 91 42.9
Lsat_1_v5_gn_4_108521 Lactuca sativa HOM05D007096 ORTHO05D008288 7.8e-06 53.9 83 39.8
Lalb_Chr13g0303241 Lupinus albus HOM05D007096 ORTHO05D008288 7.8e-06 53.9 94 39.4


User provided reference genes

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