Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030937 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 8.2e-135 483.8 257 100.0
Dinv23423 Davidia involucrata HOM05D004579 ORTHO05D005376 1.4e-86 323.6 257 71.2
Rhsim07G0143600 Rhododendron simsii HOM05D004579 ORTHO05D005376 4.6e-77 292.0 269 63.2
Hma1.2p1_1266F.1_g271430 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 6.6e-76 288.1 257 65.4
Dinv27966 Davidia involucrata HOM05D004579 ORTHO05D005376 6.2e-74 281.6 256 61.7
CiPaw.15G041800 Carya illinoinensis HOM05D004579 ORTHO05D005376 1.5e-72 276.9 258 59.7
Duzib168G1792 Durio zibethinus HOM05D004579 ORTHO05D005376 6.4e-71 271.6 254 57.5
Atru.chr7.2020 Acer truncatum HOM05D004579 ORTHO05D005376 2.7e-69 266.2 258 59.3
Glyma.04G049800 Glycine max HOM05D004579 ORTHO05D005376 2.7e-69 266.2 254 57.9
Cfa017933 Carpinus fangiana HOM05D004579 ORTHO05D005376 6.0e-69 265.0 257 58.8
Manes.03G046600 Manihot esculenta HOM05D004579 ORTHO05D005376 1.7e-68 263.5 258 53.5
MSTRG.11672 Avicennia marina HOM05D004579 ORTHO05D005376 3.9e-68 262.3 254 59.8
Glyma.06G050800 Glycine max HOM05D004579 ORTHO05D005376 6.6e-68 261.5 254 57.5
DCAR_019057 Daucus carota HOM05D004579 ORTHO05D005376 1.1e-67 260.8 255 61.2
TAR383G0831 Trochodendron aralioides HOM05D004579 ORTHO05D005376 1.5e-67 260.4 259 55.6
Cc08_g10350 Coffea canephora HOM05D004579 ORTHO05D005376 2.1e-66 256.5 257 58.0
Thecc.09G051200 Theobroma cacao HOM05D004579 ORTHO05D005376 2.1e-66 256.5 254 57.5
Actinidia14703 Actinidia chinensis HOM05D004579 ORTHO05D005376 4.7e-66 255.4 180 71.1
TWI34G1837 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 6.2e-66 255.0 258 55.0
PGSC0003DMG400005151 Solanum tuberosum HOM05D004579 ORTHO05D005376 8.1e-66 254.6 256 58.6
Prupe.1G414900 Prunus persica HOM05D004579 ORTHO05D005376 1.1e-65 254.2 260 56.5
Duzib187G0056 Durio zibethinus HOM05D004579 ORTHO05D005376 5.2e-65 251.9 253 57.7
Solyc04g080350.4 Solanum lycopersicum HOM05D004579 ORTHO05D005376 6.9e-65 251.5 258 58.9
Sopen04g033940 Solanum pennellii HOM05D004579 ORTHO05D005376 2.0e-64 250.0 252 58.3
Phvul.009G076200 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 5.8e-64 248.4 258 53.9
Nitab4.5_0008290g0030 Nicotiana tabacum HOM05D004579 ORTHO05D005376 2.2e-63 246.5 255 58.4
CAN.G1226.13 Capsicum annuum HOM05D004579 ORTHO05D005376 6.4e-63 245.0 249 55.4
vmacro05280 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 6.4e-63 245.0 370 45.9
Manes.16G077900 Manihot esculenta HOM05D004579 ORTHO05D005376 1.1e-62 244.2 264 54.5
SalBow4G3199 Salvia bowleyana HOM05D004579 ORTHO05D005376 1.1e-62 244.2 257 58.4
Nitab4.5_0006174g0020 Nicotiana tabacum HOM05D004579 ORTHO05D005376 1.9e-62 243.4 255 58.0
Migut.A00154 Erythranthe guttata HOM05D004579 ORTHO05D005376 3.2e-62 242.7 249 57.8
Peaxi162Scf00436g00719 Petunia axillaris HOM05D004579 ORTHO05D005376 4.2e-62 242.3 251 57.0
Nitab4.5_0000359g0090 Nicotiana tabacum HOM05D004579 ORTHO05D005376 5.4e-62 241.9 255 57.6
GSVIVG01035344001 Vitis vinifera HOM05D004579 ORTHO05D005376 7.1e-62 241.5 213 62.9
SGA_v2.0_scaffold88G27218 Striga asiatica HOM05D004579 ORTHO05D005376 1.6e-61 240.4 253 56.5
Gorai.001G023600 Gossypium raimondii HOM05D004579 ORTHO05D005376 6.0e-61 238.4 255 51.8
Lsat_1_v5_gn_6_7421 Lactuca sativa HOM05D004579 ORTHO05D005376 6.0e-61 238.4 258 53.9
Gohir.D07G022900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.0e-60 237.7 255 51.8
HanXRQChr08g0226451 Helianthus annuus HOM05D004579 ORTHO05D005376 1.0e-60 237.7 254 55.5
HanXRQChr08g0226601 Helianthus annuus HOM05D004579 ORTHO05D005376 1.0e-60 237.7 254 55.5
QL02p103256 Quercus lobata HOM05D004579 ORTHO05D005376 1.7e-60 236.9 255 53.7
Ca_15870_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 2.3e-60 236.5 257 52.1
TWI63G0708 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 6.6e-60 235.0 260 54.2
Lj1g0026801 Lotus japonicus HOM05D004579 ORTHO05D005376 8.7e-60 234.6 281 50.2
Ciclev10009210m.g Citrus clementina HOM05D004579 ORTHO05D005376 1.1e-59 234.2 263 54.8
QL07p000612 Quercus lobata HOM05D004579 ORTHO05D005376 1.1e-59 234.2 257 53.3
Haze_18215 Corylus avellana HOM05D004579 ORTHO05D005376 2.5e-59 233.0 319 48.0
Sc09g0009680 Simmondsia chinensis HOM05D004579 ORTHO05D005376 4.3e-59 232.3 259 57.1
Gohir.D05G045500 Gossypium hirsutum HOM05D004579 ORTHO05D005376 7.3e-59 231.5 253 54.5
Sabra06G0181300 Salix brachista HOM05D004579 ORTHO05D005376 9.6e-59 231.1 271 53.1
Gohir.A05G043900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.3e-58 230.7 277 51.3
ClCG06G000280 Citrullus lanatus HOM05D004579 ORTHO05D005376 2.8e-58 229.6 254 50.8
Gorai.009G046700 Gossypium raimondii HOM05D004579 ORTHO05D005376 6.2e-58 228.4 249 54.6
Oeu037326.2 Olea europaea HOM05D004579 ORTHO05D005376 6.2e-58 228.4 280 52.1
MELO3C022510.2 Cucumis melo HOM05D004579 ORTHO05D005376 8.1e-58 228.0 262 50.0
Potri.006G232800 Populus trichocarpa HOM05D004579 ORTHO05D005376 5.3e-57 225.3 266 51.9
arahy.Tifrunner.gnm1.ann1.XC2JTE Arachis hypogaea HOM05D004579 ORTHO05D005376 9.0e-57 224.6 260 50.4
Lalb_Chr22g0355991 Lupinus albus HOM05D004579 ORTHO05D005376 1.2e-56 224.2 259 52.1
arahy.Tifrunner.gnm1.ann1.C5JVH4 Arachis hypogaea HOM05D004579 ORTHO05D005376 2.6e-56 223.0 260 49.6
VMungo1309G2710 Vigna mungo HOM05D004579 ORTHO05D005376 3.4e-56 222.6 255 53.3
CANSAT25G0619 Cannabis sativa HOM05D004579 ORTHO05D005376 4.5e-56 222.2 260 52.3
PGR031G0410 Punica granatum HOM05D004579 ORTHO05D005376 5.8e-56 221.9 250 51.2
Oeu018654.1 Olea europaea HOM05D004579 ORTHO05D005376 9.9e-56 221.1 171 70.2
Psat5g036520 Pisum sativum HOM05D004579 ORTHO05D005376 9.9e-56 221.1 260 51.5
unitig_736.g22340 Utricularia gibba HOM05D004579 ORTHO05D005376 3.8e-55 219.2 255 48.2
Glyma.14G092900 Glycine max HOM05D004579 ORTHO05D005376 4.9e-55 218.8 256 53.5
Eucgr.C00634 Eucalyptus grandis HOM05D004579 ORTHO05D005376 6.4e-55 218.4 262 51.5
FAN20G3218 Fragaria x ananassa HOM05D004579 ORTHO05D005376 8.4e-55 218.0 260 50.4
COL.COLO4_21028 Corchorus olitorius HOM05D004579 ORTHO05D005376 1.1e-54 217.6 253 47.4
HanXRQChr09g0251171 Helianthus annuus HOM05D004579 ORTHO05D005376 1.1e-54 217.6 236 53.8
VMungo0647G1140 Vigna mungo HOM05D004579 ORTHO05D005376 1.9e-54 216.9 264 50.8
FAN15G2153 Fragaria x ananassa HOM05D004579 ORTHO05D005376 4.2e-54 215.7 259 49.8
Hund03357 Selenicereus undatus HOM05D004579 ORTHO05D005376 9.3e-54 214.5 296 50.7
TAR626G1184 Trochodendron aralioides HOM05D004579 ORTHO05D005376 2.7e-53 213.0 188 62.8
CsaV3_6G006070 Cucumis sativus L. HOM05D004579 ORTHO05D005376 4.6e-53 212.2 256 48.4
Medtr1g016630 Medicago truncatula HOM05D004579 ORTHO05D005376 6.0e-53 211.8 269 48.7
CSS0042880 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 7.9e-53 211.5 154 72.1
FAN27G3258 Fragaria x ananassa HOM05D004579 ORTHO05D005376 7.9e-53 211.5 260 49.6
Lalb_Chr24g0399591 Lupinus albus HOM05D004579 ORTHO05D005376 1.0e-52 211.1 245 54.3
Gohir.A07G022140 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.3e-52 210.7 227 52.0
Aqoxy7G00927 Aquilegia oxysepala HOM05D004579 ORTHO05D005376 2.3e-52 209.9 262 51.9
FAN24G0041 Fragaria x ananassa HOM05D004579 ORTHO05D005376 6.7e-52 208.4 260 49.6
TPR.G13109 Trifolium pratense HOM05D004579 ORTHO05D005376 6.7e-52 208.4 258 52.7
Ah.11g044630 Amaranthus hybridus HOM05D004579 ORTHO05D005376 8.7e-52 208.0 254 51.6
Sed0005208 Sechium edule HOM05D004579 ORTHO05D005376 1.9e-51 206.8 263 47.1
Sed0027918 Sechium edule HOM05D004579 ORTHO05D005376 4.3e-51 205.7 257 47.1
FvH4_2g32180 Fragaria vesca HOM05D004579 ORTHO05D005376 5.6e-51 205.3 260 48.8
Nn8g38954 Nelumbo nucifera HOM05D004579 ORTHO05D005376 7.4e-51 204.9 257 47.1
arahy.Tifrunner.gnm1.ann1.Y2NPND Arachis hypogaea HOM05D004579 ORTHO05D005376 1.3e-50 204.1 266 50.0
Ca_02416_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 1.6e-50 203.8 260 49.2
EL10Ac2g03929 Beta vulgaris HOM05D004579 ORTHO05D005376 1.4e-49 200.7 254 50.0
Psat6g019640 Pisum sativum HOM05D004579 ORTHO05D005376 3.1e-49 199.5 270 44.4
arahy.Tifrunner.gnm1.ann1.A3GFYF Arachis hypogaea HOM05D004579 ORTHO05D005376 4.0e-49 199.1 265 48.7
ECA233G0431 Erigeron canadensis HOM05D004579 ORTHO05D005376 7.6e-48 194.9 271 48.3
PSO210G6474 Papaver somniferum HOM05D004579 ORTHO05D005376 7.6e-48 194.9 273 48.7
MBI01_g16584_MAGBIO Magnolia biondii HOM05D004579 ORTHO05D005376 9.9e-48 194.5 260 43.8
PGR142G1482 Punica granatum HOM05D004579 ORTHO05D005376 2.2e-47 193.4 250 47.6
AUR62022041 Chenopodium quinoa HOM05D004579 ORTHO05D005376 6.4e-47 191.8 177 57.1
vmacro00165 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 6.4e-47 191.8 252 52.0
Lj5g0003794 Lotus japonicus HOM05D004579 ORTHO05D005376 1.1e-46 191.0 241 51.0
A05p28470 Brassica napus HOM05D004579 ORTHO05D005376 4.6e-45 185.7 257 46.7
BraA05t21726Z Brassica rapa HOM05D004579 ORTHO05D005376 6.0e-45 185.3 254 45.7
Aa31LG8G7240 Aethionema arabicum HOM05D004579 ORTHO05D005376 1.0e-44 184.5 251 45.8
CARHR096140 Cardamine hirsuta HOM05D004579 ORTHO05D005376 1.0e-44 184.5 254 46.5
PSO210G6518 Papaver somniferum HOM05D004579 ORTHO05D005376 1.0e-44 184.5 273 46.5
Thhalv10021403m.g Eutrema salsugineum HOM05D004579 ORTHO05D005376 1.3e-44 184.1 248 43.5
AT3G20430 Arabidopsis thaliana HOM05D004579 ORTHO05D005376 3.0e-44 183.0 261 46.0
BcaC05g28330 Brassica carinata HOM05D004579 ORTHO05D005376 8.7e-44 181.4 266 46.2
BolC5t33107H Brassica oleracea HOM05D004579 ORTHO05D005376 8.7e-44 181.4 266 46.2
CDE02G1740 Ceratophyllum demersum HOM05D004579 ORTHO05D005376 1.1e-43 181.0 255 46.3
C05p43910 Brassica napus HOM05D004579 ORTHO05D005376 1.9e-43 180.3 266 46.2
FAN24G1203 Fragaria x ananassa HOM05D004579 ORTHO05D005376 3.3e-43 179.5 259 43.6
Nn6g35393 Nelumbo nucifera HOM05D004579 ORTHO05D005376 4.3e-43 179.1 262 47.3
Sp3g18440 Schrenkiella parvula HOM05D004579 ORTHO05D005376 1.6e-42 177.2 259 44.8
Hund19474 Selenicereus undatus HOM05D004579 ORTHO05D005376 1.6e-42 177.2 373 39.4
BcaB06g26108 Brassica carinata HOM05D004579 ORTHO05D005376 2.1e-42 176.8 264 46.2
AL3G34150 Arabidopsis lyrata HOM05D004579 ORTHO05D005376 3.7e-42 176.0 254 44.9
PSO017G1019 Papaver somniferum HOM05D004579 ORTHO05D005376 3.7e-42 176.0 170 54.1
THA.LOC104811250 Tarenaya hassleriana HOM05D004579 ORTHO05D005376 1.1e-41 174.5 177 52.0
Carub.0003s2037 Capsella rubella HOM05D004579 ORTHO05D005376 5.3e-41 172.2 254 44.5
HPP92_014384 Vanilla planifolia HOM05D004579 ORTHO05D005376 3.4e-40 169.5 252 46.4
Zm00001eb356770 Zea mays HOM05D004579 ORTHO05D005376 4.5e-40 169.1 254 44.9
ATR0789G072 Amborella trichopoda HOM05D004579 ORTHO05D005376 4.9e-39 165.6 255 42.7
Os01g0559200 Oryza sativa ssp. japonica HOM05D004579 ORTHO05D005376 3.2e-38 162.9 276 45.3
MSTRG.25939 Avicennia marina HOM05D004579 ORTHO05D005376 3.5e-37 159.5 146 59.6
Actinidia18195 Actinidia chinensis HOM05D004579 ORTHO05D005376 3.3e-35 152.9 122 74.6
Cpa.g.sc84.21 Carica papaya HOM05D004579 ORTHO05D005376 3.3e-35 152.9 249 46.2
PSO063G4337 Papaver somniferum HOM05D004579 ORTHO05D005376 1.3e-31 141.0 221 40.7
TPR.G25353 Trifolium pratense HOM05D004579 ORTHO05D005376 3.2e-30 136.3 135 53.3
AUR62009186 Chenopodium quinoa HOM05D004579 ORTHO05D005376 7.2e-30 135.2 253 38.3
SEGI_10906 Sequoiadendron giganteum HOM05D004579 ORTHO05D005376 5.1e-28 129.0 299 32.4
Hma1.2p1_1944F.1_g308530 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 1.5e-24 117.5 135 50.4
arahy.Tifrunner.gnm1.ann1.E1I8FT Arachis hypogaea HOM05D004579 ORTHO05D005376 3.2e-22 109.8 163 44.2
PGSC0003DMG400032806 Solanum tuberosum HOM05D004579 ORTHO05D005376 7.2e-22 108.6 65 76.9
RcHm_v2.0_Chr6g0310501 Rosa chinensis HOM05D004579 ORTHO05D005376 2.1e-21 107.1 140 45.7
RcHm_v2.0_Chr6g0310491 Rosa chinensis HOM05D004579 ORTHO05D005376 2.7e-21 106.7 125 53.6
AagrBONN_evm.TU.Sc2ySwM_117.2939 Anthoceros agrestis HOM05D004579 ORTHO05D005376 1.1e-19 101.3 205 33.2
Phvul.001G033700 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 1.1e-17 94.7 145 42.1
Mapoly0091s0021 Marchantia polymorpha HOM05D004579 ORTHO05D005376 3.1e-17 93.2 212 34.0
vmacro00163 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 3.1e-17 93.2 226 38.1
CBR_g36456 Chara braunii HOM05D004579 ORTHO05D005376 1.7e-15 87.4 179 32.4
TPR.G25355 Trifolium pratense HOM05D004579 ORTHO05D005376 1.7e-15 87.4 133 46.6
Pp3c10_2240 Physcomitrium patens HOM05D004579 ORTHO05D005376 1.0e-12 78.2 161 40.4
Rhsim01G0128100 Rhododendron simsii HOM05D033462 ORTHO05D011520 1.4e-12 77.8 131 44.3
Actinidia18194 Actinidia chinensis HOM05D004579 ORTHO05D005376 1.3e-10 71.2 73 53.4
Rhsim03G0111100 Rhododendron simsii HOM05D003586 ORTHO05D004036 2.2e-10 70.5 56 71.4
PSO017G0877 Papaver somniferum HOM05D004579 ORTHO05D005376 2.4e-09 67.0 51 60.8
PSO017G5975 Papaver somniferum HOM05D004579 ORTHO05D005376 2.4e-09 67.0 51 60.8
Rhsim01G0127300 Rhododendron simsii HOM05D033462 ORTHO05D005376 4.1e-09 66.2 53 67.9
Rhsim11G0046800 Rhododendron simsii HOM05D033462 ORTHO05D005376 7.0e-09 65.5 56 71.4
QL03p011522 Quercus lobata HOM05D004579 ORTHO05D005376 7.7e-08 62.0 57 52.6
Medtr3g104160 Medicago truncatula HOM05D004579 ORTHO05D005376 1.7e-07 60.8 63 52.4
QL03p011519 Quercus lobata HOM05D004579 ORTHO05D005376 2.2e-07 60.5 87 46.0
Medtr3g104200 Medicago truncatula HOM05D004579 ORTHO05D005376 2.9e-07 60.1 103 37.9
arahy.Tifrunner.gnm1.ann1.FCA0JR Arachis hypogaea HOM05D004579 ORTHO05D005376 1.5e-06 57.8 91 40.7


User provided reference genes

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