Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030927 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 3159.4 1599 100.0
CSS0010110 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2959.1 1610 94.7
Actinidia25877 Actinidia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2728.0 1612 86.7
Dinv26250 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2715.3 1614 85.6
Manes.17G082000 Manihot esculenta HOM05D004417 ORTHO05D005528 0.0e+00 2568.1 1620 80.1
MD16G1020900 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2557.7 1621 80.0
Atru.chr11.518 Acer truncatum HOM05D004417 ORTHO05D005528 0.0e+00 2555.8 1625 80.6
Prupe.1G331400 Prunus persica HOM05D004417 ORTHO05D005528 0.0e+00 2551.2 1621 79.2
Lj3A865G68 Lonicera japonica HOM05D004417 ORTHO05D005528 0.0e+00 2550.8 1642 80.3
Ciclev10014030m.g Citrus clementina HOM05D004417 ORTHO05D005528 0.0e+00 2540.8 1606 80.1
Dinv18635 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2539.2 1516 85.3
MD13G1030100 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2535.4 1622 79.3
Potri.008G133300 Populus trichocarpa HOM05D004417 ORTHO05D005528 0.0e+00 2533.4 1623 79.2
Thecc.02G290300 Theobroma cacao HOM05D004417 ORTHO05D005528 0.0e+00 2520.7 1607 79.6
RcHm_v2.0_Chr4g0443371 Rosa chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2503.4 1621 78.4
Cc11_g08040 Coffea canephora HOM05D004417 ORTHO05D005528 0.0e+00 2501.5 1607 78.8
Gorai.005G158900 Gossypium raimondii HOM05D004417 ORTHO05D005528 0.0e+00 2500.7 1619 78.6
CANSAT01G0135 Cannabis sativa HOM05D004417 ORTHO05D005528 0.0e+00 2499.5 1615 78.4
TWI74G0839 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 0.0e+00 2494.2 1619 77.5
FvH4_4g33860 Fragaria vesca HOM05D004417 ORTHO05D005528 0.0e+00 2487.6 1620 78.0
FAN17G2093 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2487.6 1629 77.5
FAN12G0749 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2479.9 1633 77.5
Glyma.09G123500 Glycine max HOM05D004417 ORTHO05D005528 0.0e+00 2475.7 1623 77.3
Sopen05g013790 Solanum pennellii HOM05D004417 ORTHO05D005528 0.0e+00 2473.4 1607 78.2
TAR374G0310 Trochodendron aralioides HOM05D004417 ORTHO05D005528 0.0e+00 2470.7 1617 78.2
Lj2g0013863 Lotus japonicus HOM05D004417 ORTHO05D005528 0.0e+00 2466.8 1614 77.3
Eucgr.B02952 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2464.5 1610 76.9
Phvul.003G021100 Phaseolus vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2454.5 1622 76.9
CsaV3_5G028240 Cucumis sativus L. HOM05D004417 ORTHO05D005528 0.0e+00 2448.3 1622 76.2
Sed0000894 Sechium edule HOM05D004417 ORTHO05D005528 0.0e+00 2432.1 1622 75.8
HanXRQChr17g0567351 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 2428.3 1608 76.7
Lalb_Chr13g0290691 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2425.2 1591 77.0
Lsat_1_v5_gn_3_55840 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 2423.7 1604 76.4
Psat6g045000 Pisum sativum HOM05D004417 ORTHO05D005528 0.0e+00 2421.4 1623 75.6
Medtr1g031910 Medicago truncatula HOM05D004417 ORTHO05D005528 0.0e+00 2420.6 1623 75.1
ECA246G0702 Erigeron canadensis HOM05D004417 ORTHO05D005528 0.0e+00 2417.5 1615 75.9
MSTRG.7613 Avicennia marina HOM05D004417 ORTHO05D005528 0.0e+00 2414.4 1605 76.9
SalBow8G1470 Salvia bowleyana HOM05D004417 ORTHO05D005528 0.0e+00 2413.6 1675 74.4
QL03p034852 Quercus lobata HOM05D004417 ORTHO05D005528 0.0e+00 2406.3 1512 80.7
TPR.G36876 Trifolium pratense HOM05D004417 ORTHO05D005528 0.0e+00 2403.2 1642 73.6
MELO3C005286.2 Cucumis melo HOM05D004417 ORTHO05D005528 0.0e+00 2394.0 1647 74.3
Nn4g24297 Nelumbo nucifera HOM05D004417 ORTHO05D005528 0.0e+00 2390.1 1615 75.2
Ca_12568_v3 Cicer arietinum L. HOM05D004417 ORTHO05D005528 0.0e+00 2383.2 1623 74.4
ClCG01G006440 Citrullus lanatus HOM05D004417 ORTHO05D005528 0.0e+00 2369.7 1634 74.1
EL10Ac6g14152 Beta vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2356.3 1614 74.3
Sabra08G0101900 Salix brachista HOM05D004417 ORTHO05D005528 0.0e+00 2356.3 1931 65.6
PSO478G2641 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2351.6 1620 73.1
PSO017G2325 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2343.5 1621 72.7
PGR042G2175 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2343.2 1616 74.0
GSVIVG01011680001 Vitis vinifera HOM05D004417 ORTHO05D005528 0.0e+00 2336.6 1660 73.7
AUR62038465 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 2325.1 1621 73.4
PGR042G0049 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2318.5 1614 73.2
Aqoxy3G00033 Aquilegia oxysepala HOM05D004417 ORTHO05D005528 0.0e+00 2308.1 1626 72.2
Ah.03g137400 Amaranthus hybridus HOM05D004417 ORTHO05D005528 0.0e+00 2304.6 1614 72.3
Migut.L00554 Erythranthe guttata HOM05D004417 ORTHO05D005528 0.0e+00 2304.2 1608 74.2
Eucgr.B02949 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2301.2 1604 73.2
THA.LOC104822992 Tarenaya hassleriana HOM05D004417 ORTHO05D005528 0.0e+00 2283.1 1629 71.6
Gohir.D02G141800 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 2268.8 1453 78.9
Carub.0001s2282 Capsella rubella HOM05D004417 ORTHO05D005528 0.0e+00 2266.5 1628 71.8
Lalb_Chr16g0387721 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2265.3 1600 71.8
AL1G37020 Arabidopsis lyrata HOM05D004417 ORTHO05D005528 0.0e+00 2264.6 1623 71.3
Aa31LG7G7270 Aethionema arabicum HOM05D004417 ORTHO05D005528 0.0e+00 2263.0 1626 71.3
Sc14g0006960 Simmondsia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2257.6 1515 75.1
Sp1g20700 Schrenkiella parvula HOM05D004417 ORTHO05D005528 0.0e+00 2250.3 1613 71.6
CARHR023690 Cardamine hirsuta HOM05D004417 ORTHO05D005528 0.0e+00 2245.7 1628 71.3
AT1G23230 Arabidopsis thaliana HOM05D004417 ORTHO05D005528 0.0e+00 2244.5 1618 71.1
Oeu018613.1 Olea europaea HOM05D004417 ORTHO05D005528 0.0e+00 2221.0 1557 73.6
Thhalv10006548m.g Eutrema salsugineum HOM05D004417 ORTHO05D005528 0.0e+00 2208.7 1613 70.6
BcaB07g32314 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2197.2 1604 70.2
BcaB03g14154 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2193.3 1602 70.8
FAN07G1109 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2192.9 1424 77.3
A07p13940 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2181.8 1620 69.4
BraA07t29150Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2176.0 1619 69.5
BcaC06g35029 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2174.4 1620 69.6
arahy.Tifrunner.gnm1.ann1.GYT9TN Arachis hypogaea HOM05D004417 ORTHO05D005528 0.0e+00 2148.2 1953 59.8
A09p41530 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2147.5 1618 68.6
BolC5t30944H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2147.1 1607 69.0
BraA09t39644Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2145.2 1622 68.2
BolC7t42575H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2140.5 1620 68.7
C07p20490 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2137.1 1620 68.6
C05p22460 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2133.2 1607 68.7
COL.COLO4_13080 Corchorus olitorius HOM05D004417 ORTHO05D005528 0.0e+00 2125.5 1417 77.3
CiPaw.05G190700 Carya illinoinensis HOM05D004417 ORTHO05D005528 0.0e+00 2114.3 1361 79.4
SGA_v2.0_scaffold50G18460 Striga asiatica HOM05D004417 ORTHO05D005528 0.0e+00 2093.2 1634 67.3
Hund24934 Selenicereus undatus HOM05D004417 ORTHO05D005528 0.0e+00 2080.1 1468 72.2
Os02g0732700 Oryza sativa ssp. japonica HOM05D004417 ORTHO05D005528 0.0e+00 2077.8 1618 66.3
Zm00001eb253700 Zea mays HOM05D004417 ORTHO05D005528 0.0e+00 2070.4 1606 66.3
ATR0753G138 Amborella trichopoda HOM05D004417 ORTHO05D005528 0.0e+00 2048.5 1612 66.1
CDE07G0372 Ceratophyllum demersum HOM05D004417 ORTHO05D005528 0.0e+00 2038.5 1608 65.4
HanXRQChr17g0566691 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 1982.6 1609 65.0
Lsat_1_v5_gn_4_12821 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 1972.6 1593 64.8
BcaC05g26233 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 1953.3 1614 64.0
Duzib251G0182 Durio zibethinus HOM05D004417 ORTHO05D005528 0.0e+00 1924.8 1199 80.8
vmacro00393 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 0.0e+00 1886.7 1206 80.8
DCAR_007321 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1839.3 1563 64.4
Peaxi162Scf00376g00032 Petunia axillaris HOM05D004417 ORTHO05D005528 0.0e+00 1755.3 1416 66.4
Rhsim09G0063500 Rhododendron simsii HOM05D004417 ORTHO05D005528 0.0e+00 1705.6 1373 68.0
AUR62014157 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 1693.7 1102 77.3
Nitab4.5_0000018g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 0.0e+00 1590.9 981 81.3
Solyc05g016440.3 Solanum lycopersicum HOM05D004417 ORTHO05D005528 0.0e+00 1541.6 971 80.1
Mapoly0005s0093 Marchantia polymorpha HOM05D004417 ORTHO05D005528 0.0e+00 1427.2 1634 49.1
SEGI_05575 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 0.0e+00 1376.3 1201 59.0
Pp3c27_2940 Physcomitrium patens HOM05D004417 ORTHO05D005528 0.0e+00 1373.6 1625 48.4
SMO364G0727 Selaginella moellendorffii HOM05D004417 ORTHO05D005528 0.0e+00 1315.8 1604 46.4
DCAR_030256 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1268.8 1079 62.0
unitig_899.g15633 Utricularia gibba HOM05D004417 ORTHO05D005528 0.0e+00 1221.8 1608 47.3
Gohir.A03G118100 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 1191.8 732 81.4
Gohir.A03G118200 Gossypium hirsutum HOM05D004417 ORTHO05D005528 2.9e-286 989.6 653 77.0
Solyc05g016460.2 Solanum lycopersicum HOM05D004417 ORTHO05D005528 2.1e-273 946.8 641 75.2
Nitab4.5_0008542g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.2e-260 904.4 601 77.0
Nitab4.5_0000018g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 6.0e-260 902.1 589 77.9
Cpa.g.sc2.220 Carica papaya HOM05D004417 ORTHO05D005528 1.6e-257 894.0 590 76.8
arahy.Tifrunner.gnm1.ann1.W0X7A3 Arachis hypogaea HOM05D004417 ORTHO05D005528 1.6e-252 877.5 603 74.8
VMungo1215G0458 Vigna mungo HOM05D004417 ORTHO05D005528 1.1e-248 864.8 534 81.6
Nitab4.5_0008542g0030 Nicotiana tabacum HOM05D004417 ORTHO05D005528 5.0e-238 829.3 503 82.3
vmacro00394 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 3.9e-227 793.1 517 79.3
SHI04465 Sapria himalayana HOM05D004417 ORTHO05D005528 1.9e-221 774.2 654 63.1
BcaB07g32312 Brassica carinata HOM05D004417 ORTHO05D005528 2.1e-212 744.2 522 73.6
Rhsim09G0063700 Rhododendron simsii HOM05D004417 ORTHO05D005528 1.9e-205 721.1 509 74.3
SHI04470 Sapria himalayana HOM05D004417 ORTHO05D005528 3.5e-199 700.3 648 58.2
VMungo1215G3220 Vigna mungo HOM05D004417 ORTHO05D005528 6.1e-196 689.5 517 70.2
Haze_10919 Corylus avellana HOM05D004417 ORTHO05D005528 2.7e-191 674.1 399 84.5
arahy.Tifrunner.gnm1.ann1.LF64TX Arachis hypogaea HOM05D004417 ORTHO05D005528 9.5e-181 639.0 476 70.0
Actinidia25661 Actinidia chinensis HOM05D004417 ORTHO05D005528 8.0e-180 636.0 555 64.3
HPP92_024821 Vanilla planifolia HOM05D004417 ORTHO05D005528 1.6e-156 558.5 490 58.4
Haze_10916 Corylus avellana HOM05D004417 ORTHO05D005528 3.5e-151 540.8 360 78.1
VMungo1215G0989 Vigna mungo HOM05D004417 ORTHO05D005528 7.8e-151 539.7 333 78.1
Cpa.g.sc2.214 Carica papaya HOM05D004417 ORTHO05D005528 2.0e-146 525.0 325 83.1
Actinidia25662 Actinidia chinensis HOM05D004417 ORTHO05D005528 4.3e-141 507.3 292 89.7
Nitab4.5_0005025g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 3.4e-122 444.5 318 71.7
Nitab4.5_0008542g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 4.2e-120 437.6 321 72.0
SEGI_15839 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 1.6e-116 425.6 371 59.6
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 1.5e-114 419.1 407 56.0
SEGI_38026 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 1.0e-113 416.4 402 55.0
CAN.G45.11 Capsicum annuum HOM05D004417 ORTHO05D005528 1.0e-110 406.4 318 67.6
VMungo1215G1550 Vigna mungo HOM05D004417 ORTHO05D005528 1.6e-103 382.5 213 85.4
Psat0ss9816g0160 Pisum sativum HOM05D004417 ORTHO05D005528 1.3e-89 336.3 250 66.0
CiPaw.05G190600 Carya illinoinensis HOM05D004417 ORTHO05D005528 3.7e-76 291.6 161 88.8
Psat2g053360 Pisum sativum HOM05D004417 ORTHO05D005528 1.1e-75 290.0 211 71.1
Peaxi162Scf00376g00324 Petunia axillaris HOM05D004417 ORTHO05D005528 4.1e-75 288.1 162 85.2
Potri.010G108350 Populus trichocarpa HOM05D004417 ORTHO05D005528 4.7e-63 248.1 142 85.9
PSO083G0001 Papaver somniferum HOM05D004417 ORTHO05D005528 1.7e-60 239.6 142 78.2
SEGI_21450 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 2.7e-50 205.7 212 54.7
SHI04469 Sapria himalayana HOM05D004417 ORTHO05D005528 3.2e-43 182.2 148 64.2
Haze_10915 Corylus avellana HOM05D004417 ORTHO05D005528 3.5e-42 178.7 102 85.3
QL03p034878 Quercus lobata HOM05D004417 ORTHO05D005528 8.1e-39 167.5 93 86.0
CAN.G45.12 Capsicum annuum HOM05D004417 ORTHO05D005528 3.1e-38 165.6 100 77.0
Hund24935 Selenicereus undatus HOM05D008000 ORTHO05D010275 2.6e-37 162.5 101 78.2
Nitab4.5_0008542g0040 Nicotiana tabacum HOM05D004417 ORTHO05D005528 3.5e-34 152.1 139 57.6
Cpa.g.sc2.218 Carica papaya HOM05D004417 ORTHO05D005528 7.8e-34 151.0 124 66.9
Gorai.010G022100 Gossypium raimondii HOM05D004417 ORTHO05D003549 1.3e-33 150.2 129 63.6
Sopen03g014530 Solanum pennellii HOM05D004417 ORTHO05D005528 4.0e-30 138.7 91 73.6
Gohir.D10G083700 Gossypium hirsutum HOM05D003153 ORTHO05D003549 9.9e-29 134.0 139 54.7
Gohir.A02G156900 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.3e-28 133.7 139 54.7
Gohir.A03G114800 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.3e-28 133.7 139 54.7
Gohir.D01G098050 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.3e-28 133.7 139 54.7
Gohir.D10G134850 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.3e-28 133.7 139 54.7
Gohir.D13G141401 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.3e-28 133.7 139 54.7
Gorai.011G113600 Gossypium raimondii HOM05D003153 ORTHO05D003549 1.3e-28 133.7 139 54.7
Gohir.D10G083766 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.7e-28 133.3 139 54.0
Duzib084G1091 Durio zibethinus HOM05D004417 ORTHO05D005528 7.9e-26 124.4 80 71.2
Gorai.002G174000 Gossypium raimondii HOM05D004417 ORTHO05D000624 2.8e-23 115.9 91 62.6
Gohir.D01G141400 Gossypium hirsutum HOM05D004417 ORTHO05D000624 4.8e-23 115.2 91 61.5
HPP92_024820 Vanilla planifolia HOM05D004417 ORTHO05D005528 1.2e-21 110.5 108 61.1
Gohir.A13G139960 Gossypium hirsutum HOM05D003153 ORTHO05D003549 7.6e-21 107.8 126 50.8
Gohir.1Z049383 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.7e-20 106.7 126 50.0
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 5.5e-19 101.7 69 65.2
Haze_10917 Corylus avellana HOM05D004417 ORTHO05D005528 6.0e-18 98.2 51 86.3
HPP92_024819 Vanilla planifolia HOM05D004417 ORTHO05D005528 4.8e-15 88.6 82 57.3
Psat1g176600 Pisum sativum HOM05D002927 ORTHO05D015040 6.2e-15 88.2 55 78.2
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 1.0e-12 80.9 56 73.2
Migut.L00545 Erythranthe guttata HOM05D004417 ORTHO05D005528 8.4e-12 77.8 51 70.6
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 1.4e-11 77.0 54 70.4
Psat7g192520 Pisum sativum HOM05D002736 ORTHO05D018191 4.2e-11 75.5 171 39.8
TWI77G0048 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 4.2e-11 75.5 50 70.0
Cpa.g.sc2.221 Carica papaya HOM05D004417 ORTHO05D120462 1.3e-07 63.9 54 57.4
Psat6g165840 Pisum sativum HOM05D004417 ORTHO05D322506 2.4e-06 59.7 70 48.6
Psat0s3527g0040 Pisum sativum HOM05D005005 ORTHO05D006178 6.9e-06 58.2 38 63.2


User provided reference genes

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