Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030921 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.3e-176 622.9 298 100.0
CSS0016924 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.4e-165 586.3 294 96.6
Actinidia07768 Actinidia chinensis HOM05D004085 ORTHO05D005189 1.1e-138 496.9 322 75.5
Rhsim09G0122200 Rhododendron simsii HOM05D004085 ORTHO05D005189 1.1e-138 496.9 317 76.3
vmacro10475 Vaccinium macrocarpon HOM05D004085 ORTHO05D005189 9.2e-138 493.8 317 75.7
Dinv34021 Davidia involucrata HOM05D004085 ORTHO05D005189 2.3e-136 489.2 319 74.9
Hma1.2p1_0428F.1_g150850 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 1.6e-129 466.5 318 71.7
TWI75G0426 Tripterygium wilfordii HOM05D004085 ORTHO05D005189 2.1e-129 466.1 318 72.3
Lj3A1027G87 Lonicera japonica HOM05D004085 ORTHO05D005189 2.7e-129 465.7 370 63.5
Duzib251G0046 Durio zibethinus HOM05D004085 ORTHO05D005189 1.7e-128 463.0 321 70.4
Nn4g23533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 1.7e-128 463.0 318 69.5
Atru.chr11.1559 Acer truncatum HOM05D004085 ORTHO05D005189 5.1e-128 461.5 318 70.1
Duzib248G1362 Durio zibethinus HOM05D004085 ORTHO05D005189 1.5e-127 459.9 302 73.2
PGR102G0161 Punica granatum HOM05D004085 ORTHO05D005189 3.3e-127 458.8 317 70.3
TAR629G1999 Trochodendron aralioides HOM05D004085 ORTHO05D005189 1.2e-126 456.8 317 69.4
Manes.05G115200 Manihot esculenta HOM05D004085 ORTHO05D005189 2.8e-126 455.7 317 70.0
GSVIVG01008152001 Vitis vinifera HOM05D004085 ORTHO05D005189 6.2e-126 454.5 317 68.8
CiPaw.05G122000 Carya illinoinensis HOM05D004085 ORTHO05D005189 1.1e-125 453.8 320 69.4
Gohir.D02G131700 Gossypium hirsutum HOM05D004085 ORTHO05D005189 1.4e-125 453.4 322 68.3
Gohir.A03G106500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 1.8e-125 453.0 324 67.9
Thecc.02G322800 Theobroma cacao HOM05D004085 ORTHO05D005189 3.1e-125 452.2 319 69.0
Gorai.005G147600 Gossypium raimondii HOM05D004085 ORTHO05D005189 4.0e-125 451.8 324 68.2
CSS0028863 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 5.2e-125 451.4 316 68.4
ECA233G2807 Erigeron canadensis HOM05D004085 ORTHO05D005189 5.2e-125 451.4 317 69.7
Migut.D01616 Erythranthe guttata HOM05D004085 ORTHO05D005189 6.8e-125 451.1 317 66.9
Eucgr.J01102 Eucalyptus grandis HOM05D004085 ORTHO05D005189 2.0e-124 449.5 319 67.7
DCAR_011575 Daucus carota HOM05D004085 ORTHO05D005189 3.4e-124 448.7 318 66.7
Dinv07974 Davidia involucrata HOM05D004085 ORTHO05D005189 4.4e-124 448.4 321 68.2
CANSAT64G3016 Cannabis sativa HOM05D004085 ORTHO05D005189 5.8e-124 448.0 318 68.2
DCAR_007209 Daucus carota HOM05D004085 ORTHO05D005189 7.6e-124 447.6 317 67.2
Hma1.2p1_0595F.1_g186285 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 9.9e-124 447.2 315 67.3
MELO3C011402.2 Cucumis melo HOM05D004085 ORTHO05D005189 1.3e-123 446.8 315 68.9
PSO063G3410 Papaver somniferum HOM05D004085 ORTHO05D005189 1.3e-123 446.8 318 68.2
Lj4g0023791 Lotus japonicus HOM05D004085 ORTHO05D005189 3.7e-123 445.3 319 68.7
Aqoxy3G03746 Aquilegia oxysepala HOM05D004085 ORTHO05D005189 4.9e-123 444.9 319 66.8
PSO409G0049 Papaver somniferum HOM05D004085 ORTHO05D005189 6.4e-123 444.5 318 67.9
Phvul.003G280600 Phaseolus vulgaris HOM05D004085 ORTHO05D005189 6.4e-123 444.5 319 67.4
Medtr8g066120 Medicago truncatula HOM05D004085 ORTHO05D005189 1.1e-122 443.7 319 68.3
CsaV3_6G033900 Cucumis sativus L. HOM05D004085 ORTHO05D005189 1.9e-122 443.0 319 67.7
Sc14g0007770 Simmondsia chinensis HOM05D004085 ORTHO05D005189 2.4e-122 442.6 320 68.1
Prupe.1G293400 Prunus persica HOM05D004085 ORTHO05D005189 4.1e-122 441.8 322 68.3
Haze_11859 Corylus avellana HOM05D004085 ORTHO05D005189 9.2e-122 440.7 373 61.1
ClCG08G010600 Citrullus lanatus HOM05D004085 ORTHO05D005189 1.6e-121 439.9 319 66.8
arahy.Tifrunner.gnm1.ann1.34XV9Z Arachis hypogaea HOM05D004085 ORTHO05D005189 3.5e-121 438.7 319 67.7
Ca_22870_v3 Cicer arietinum L. HOM05D004085 ORTHO05D005189 3.5e-121 438.7 321 67.9
MD13G1056600 Malus domestica HOM05D004085 ORTHO05D005189 3.5e-121 438.7 325 67.1
Psat4g118760 Pisum sativum HOM05D004085 ORTHO05D005189 4.6e-121 438.3 317 67.2
Psat4g122760 Pisum sativum HOM05D004085 ORTHO05D005189 4.6e-121 438.3 317 67.2
Sopen04g001280 Solanum pennellii HOM05D004085 ORTHO05D005189 4.6e-121 438.3 318 67.9
HanXRQChr12g0365061 Helianthus annuus HOM05D004085 ORTHO05D005189 6.0e-121 438.0 317 66.6
MD16G1055900 Malus domestica HOM05D004085 ORTHO05D005189 6.0e-121 438.0 325 66.2
PGSC0003DMG400001937 Solanum tuberosum HOM05D004085 ORTHO05D005189 7.8e-121 437.6 318 67.6
Cpa.g.sc1.168 Carica papaya HOM05D004085 ORTHO05D005189 1.0e-120 437.2 319 67.4
Glyma.05G183800 Glycine max HOM05D004085 ORTHO05D005189 1.0e-120 437.2 319 66.5
Cc11_g11560 Coffea canephora HOM05D004085 ORTHO05D005189 3.9e-120 435.3 319 67.7
Nitab4.5_0002863g0020 Nicotiana tabacum HOM05D004085 ORTHO05D005189 5.1e-120 434.9 316 63.9
HanXRQChr05g0157451 Helianthus annuus HOM05D004085 ORTHO05D005189 6.6e-120 434.5 317 67.2
Ciclev10032152m.g Citrus clementina HOM05D004085 ORTHO05D005189 8.6e-120 434.1 321 65.7
AUR62007873 Chenopodium quinoa HOM05D004085 ORTHO05D005189 1.1e-119 433.7 295 69.5
Peaxi162Scf00873g00113 Petunia axillaris HOM05D004085 ORTHO05D005189 1.1e-119 433.7 320 67.2
PGSC0003DMG402004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 1.1e-119 433.7 316 64.2
Nitab4.5_0001071g0010 Nicotiana tabacum HOM05D004085 ORTHO05D005189 1.9e-119 433.0 318 66.4
Cfa008850 Carpinus fangiana HOM05D004085 ORTHO05D005189 2.5e-119 432.6 307 69.7
CAN.G587.59 Capsicum annuum HOM05D004085 ORTHO05D005189 4.3e-119 431.8 316 63.9
Lalb_Chr20g0117031 Lupinus albus HOM05D004085 ORTHO05D005189 4.3e-119 431.8 318 66.7
VMungo0251G3520 Vigna mungo HOM05D004085 ORTHO05D005189 5.6e-119 431.4 341 63.0
Potri.015G048700 Populus trichocarpa HOM05D004085 ORTHO05D005189 7.3e-119 431.0 317 65.6
Solyc06g069390.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 7.3e-119 431.0 316 64.2
Sopen06g026660 Solanum pennellii HOM05D004085 ORTHO05D005189 7.3e-119 431.0 316 63.9
AUR62003058 Chenopodium quinoa HOM05D004085 ORTHO05D005189 9.6e-119 430.6 295 68.8
PGR044G1995 Punica granatum HOM05D004085 ORTHO05D005189 1.2e-118 430.3 326 63.2
Nitab4.5_0002449g0030 Nicotiana tabacum HOM05D004085 ORTHO05D005189 6.2e-118 427.9 302 65.9
Nitab4.5_0000591g0050 Nicotiana tabacum HOM05D004085 ORTHO05D005189 1.1e-117 427.2 315 66.0
Ah.03g138610 Amaranthus hybridus HOM05D004085 ORTHO05D005189 8.9e-117 424.1 317 64.4
Lsat_1_v5_gn_8_36601 Lactuca sativa HOM05D004085 ORTHO05D005189 1.5e-116 423.3 315 67.3
ECA246G2852 Erigeron canadensis HOM05D004085 ORTHO05D005189 2.0e-116 422.9 315 65.1
Carub.0005s0294 Capsella rubella HOM05D004085 ORTHO05D005189 5.8e-116 421.4 318 64.5
THA.LOC104805212 Tarenaya hassleriana HOM05D004085 ORTHO05D005189 5.8e-116 421.4 318 65.1
MSTRG.7728 Avicennia marina HOM05D004085 ORTHO05D005189 1.3e-115 420.2 319 65.5
Gohir.D11G037500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 2.2e-115 419.5 317 62.1
Gorai.007G040300 Gossypium raimondii HOM05D004085 ORTHO05D005189 2.2e-115 419.5 317 62.1
Manes.06G081100 Manihot esculenta HOM05D004085 ORTHO05D005189 2.2e-115 419.5 320 65.0
Sabra15G0078600 Salix brachista HOM05D004085 ORTHO05D005189 2.9e-115 419.1 317 64.7
Sed0007813 Sechium edule HOM05D004085 ORTHO05D005189 6.4e-115 417.9 323 64.1
AL5G13590 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 8.4e-115 417.5 320 64.7
RcHm_v2.0_Chr4g0437351 Rosa chinensis HOM05D004085 ORTHO05D005189 1.1e-114 417.2 315 65.4
Lsat_1_v5_gn_5_23401 Lactuca sativa HOM05D004085 ORTHO05D005189 2.4e-114 416.0 315 63.8
Lalb_Chr15g0084991 Lupinus albus HOM05D004085 ORTHO05D005189 3.2e-114 415.6 320 63.8
MSTRG.779 Avicennia marina HOM05D004085 ORTHO05D005189 7.1e-114 414.5 317 65.6
FAN12G2772 Fragaria x ananassa HOM05D004085 ORTHO05D005189 9.3e-114 414.1 311 65.3
AL3G42500 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 1.6e-113 413.3 319 64.3
BcaC06g31165 Brassica carinata HOM05D004085 ORTHO05D005189 1.6e-113 413.3 318 64.5
CSS0006421 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.6e-113 413.3 316 63.6
SalBow2G2246 Salvia bowleyana HOM05D004085 ORTHO05D005189 2.1e-113 412.9 321 64.2
Aa31LG2G6920 Aethionema arabicum HOM05D004085 ORTHO05D005189 3.5e-113 412.1 336 61.3
AT2G03800 Arabidopsis thaliana HOM05D004085 ORTHO05D005189 3.5e-113 412.1 321 64.5
ATR0691G189 Amborella trichopoda HOM05D004085 ORTHO05D005189 4.6e-113 411.8 319 63.3
CDE01G0369 Ceratophyllum demersum HOM05D004085 ORTHO05D005189 6.0e-113 411.4 319 63.0
FAN22G1834 Fragaria x ananassa HOM05D004085 ORTHO05D005189 1.7e-112 409.8 311 64.3
Os08g0339200 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 1.5e-111 406.8 319 63.6
Peaxi162Scf00013g00834 Petunia axillaris HOM05D004085 ORTHO05D005189 1.5e-111 406.8 308 62.3
BcaC03g17242 Brassica carinata HOM05D004085 ORTHO05D005189 7.3e-111 404.4 318 63.5
BolC2t11263H Brassica oleracea HOM05D004085 ORTHO05D005189 7.3e-111 404.4 318 63.5
Sp2g14620 Schrenkiella parvula HOM05D004085 ORTHO05D005189 9.6e-111 404.1 318 62.9
CARHR146210 Cardamine hirsuta HOM05D004085 ORTHO05D005189 1.3e-110 403.7 319 62.4
A02p33630 Brassica napus HOM05D004085 ORTHO05D005189 2.8e-110 402.5 318 62.9
Hund25155 Selenicereus undatus HOM05D004085 ORTHO05D005189 8.1e-110 401.0 397 53.4
BcaC06g31143 Brassica carinata HOM05D004085 ORTHO05D005189 1.1e-109 400.6 318 62.9
C07p34240 Brassica napus HOM05D004085 ORTHO05D005189 1.1e-109 400.6 318 62.9
BolC7t43952H Brassica oleracea HOM05D004085 ORTHO05D005189 1.1e-109 400.6 318 62.9
Lj5A137T62 Lonicera japonica HOM05D004085 ORTHO05D005189 1.1e-109 400.6 277 70.4
A06p42850 Brassica napus HOM05D004085 ORTHO05D005189 1.8e-109 399.8 318 62.9
BraA06t27197Z Brassica rapa HOM05D004085 ORTHO05D005189 4.0e-109 398.7 318 62.9
C02p51780 Brassica napus HOM05D004085 ORTHO05D005189 9.0e-109 397.5 318 62.3
Thhalv10004640m.g Eutrema salsugineum HOM05D004085 ORTHO05D005189 9.0e-109 397.5 318 61.6
BcaB07g30279 Brassica carinata HOM05D004085 ORTHO05D005189 7.6e-108 394.4 318 62.3
EL10Ac6g14673 Beta vulgaris HOM05D004085 ORTHO05D005189 9.9e-108 394.0 335 58.5
COL.COLO4_27493 Corchorus olitorius HOM05D004085 ORTHO05D005189 1.3e-107 393.7 294 61.9
Zm00001eb276680 Zea mays HOM05D004085 ORTHO05D005189 6.4e-107 391.3 325 59.7
FAN07G2517 Fragaria x ananassa HOM05D004085 ORTHO05D005189 1.5e-103 380.2 398 51.3
Mapoly0007s0171 Marchantia polymorpha HOM05D004085 ORTHO05D005189 6.9e-101 371.3 329 55.3
HPP92_003714 Vanilla planifolia HOM05D004085 ORTHO05D005189 1.5e-100 370.2 291 62.2
SGA_v2.0_scaffold36G14490 Striga asiatica HOM05D004085 ORTHO05D005189 2.6e-100 369.4 298 63.1
Eucgr.K02549 Eucalyptus grandis HOM05D004085 ORTHO05D005189 1.7e-99 366.7 296 58.4
MBI14_g08107_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 8.4e-99 364.4 268 66.4
Gohir.A11G034100 Gossypium hirsutum HOM05D004085 ORTHO05D005189 4.2e-98 362.1 296 59.1
Cpa.g.sc3.236 Carica papaya HOM05D004085 ORTHO05D005189 7.9e-97 357.8 338 52.7
Migut.L01162 Erythranthe guttata HOM05D004085 ORTHO05D005189 8.7e-96 354.4 281 64.1
SMO146G0350 Selaginella moellendorffii HOM05D004085 ORTHO05D005189 1.0e-91 340.9 323 52.9
SHI14335 Sapria himalayana HOM05D004085 ORTHO05D005189 1.3e-91 340.5 336 53.0
AagrBONN_evm.TU.Sc2ySwM_344.2928 Anthoceros agrestis HOM05D004085 ORTHO05D005189 1.2e-89 334.0 318 51.3
Pp3c3_10070 Physcomitrium patens HOM05D004085 ORTHO05D005189 1.2e-89 334.0 318 52.8
COL.COLO4_27802 Corchorus olitorius HOM05D004085 ORTHO05D005189 7.9e-89 331.3 326 54.3
Pp3c4_31680 Physcomitrium patens HOM05D004085 ORTHO05D005189 2.3e-88 329.7 320 50.6
MD16G1055500 Malus domestica HOM05D004085 ORTHO05D005189 1.3e-86 323.9 299 55.5
Oeu045347.1 Olea europaea HOM05D004085 ORTHO05D005189 6.1e-81 305.1 246 61.0
Nn3g17533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 1.4e-77 293.9 292 51.4
CBR_g34346 Chara braunii HOM05D004085 ORTHO05D005189 3.4e-76 289.3 353 43.3
BraA02t08382Z Brassica rapa HOM05D004085 ORTHO05D005189 6.7e-72 275.0 229 61.1
unitig_22.g6891 Utricularia gibba HOM05D004085 ORTHO05D005189 3.1e-69 266.2 207 60.4
CSS0002590 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.6e-65 253.8 283 50.5
PGSC0003DMG401004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 7.9e-65 251.5 176 68.2
arahy.Tifrunner.gnm1.ann1.A9XC2E Arachis hypogaea HOM05D004085 ORTHO05D005189 7.4e-63 245.0 177 68.4
FvH4_4g29300 Fragaria vesca HOM05D004085 ORTHO05D005189 2.8e-62 243.0 194 60.8
Os09g0248000 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 8.2e-62 241.5 162 69.8
Oeu045348.1 Olea europaea HOM05D004085 ORTHO05D005189 2.5e-58 229.9 144 73.6
TPR.G27985 Trifolium pratense HOM05D004085 ORTHO05D005189 7.2e-58 228.4 151 71.5
C07p34190 Brassica napus HOM05D004085 ORTHO05D005189 7.0e-53 211.8 166 63.9
Solyc04g005300.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 5.5e-50 202.2 136 67.6
Peaxi162Scf00098g00096 Petunia axillaris HOM05D004085 ORTHO05D005189 5.2e-40 169.1 124 64.5
TPR.G3316 Trifolium pratense HOM05D004085 ORTHO05D026373 1.2e-33 147.9 89 78.7
MBI10_g36395_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 1.8e-32 144.1 147 49.0
SEGI_05680 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 6.8e-32 142.1 110 59.1
BolC7t43934H Brassica oleracea HOM05D004085 ORTHO05D005189 4.6e-28 129.4 105 61.9
Thecc.03G108100 Theobroma cacao HOM05D004085 ORTHO05D026373 2.5e-26 123.6 90 63.3
Lj3C737G8 Lonicera japonica HOM05D004085 ORTHO05D005189 4.7e-25 119.4 73 74.0
TPR.G40588 Trifolium pratense HOM05D004085 ORTHO05D005189 4.7e-25 119.4 66 78.8
Duzib068G1264 Durio zibethinus HOM05D004085 ORTHO05D005189 3.4e-23 113.2 107 49.5
Actinidia04797 Actinidia chinensis HOM05D004085 ORTHO05D026373 6.4e-22 109.0 73 67.1
HPP92_003722 Vanilla planifolia HOM05D004085 ORTHO05D005189 2.0e-20 104.0 126 44.4
BolC7t43946H Brassica oleracea HOM05D004085 ORTHO05D005189 3.0e-19 100.1 88 55.7
Lj5A720T31 Lonicera japonica HOM05D004085 ORTHO05D026373 4.3e-18 96.3 89 53.9
BcaC06g31148 Brassica carinata HOM05D004085 ORTHO05D005189 6.8e-16 89.0 72 59.7
MD05G1127700 Malus domestica HOM05D004085 ORTHO05D005189 4.4e-15 86.3 96 47.9
Ciclev10024148m.g Citrus clementina HOM05D004085 ORTHO05D043374 6.6e-11 72.4 43 72.1
CANSAT64G2585 Cannabis sativa HOM05D004085 ORTHO05D043374 6.2e-09 65.9 55 56.4
Eucgr.B03119 Eucalyptus grandis HOM05D004085 ORTHO05D195170 4.4e-07 59.7 57 50.9
HPP92_003723 Vanilla planifolia HOM05D004085 ORTHO05D005189 8.4e-06 55.5 76 44.7


User provided reference genes

Program Settings