Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030909 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 1.2e-36 156.0 81 100.0
CSS0046364 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 2.4e-32 141.7 107 75.7
CSS0007787 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 2.8e-28 128.3 106 67.9
CSS0022818 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 8.3e-25 116.7 105 64.8
Dinv29511 Davidia involucrata HOM05D004696 ORTHO05D005645 3.0e-14 81.6 101 49.5
vmacro08011 Vaccinium macrocarpon HOM05D004696 ORTHO05D005645 1.2e-12 76.3 106 46.2
Actinidia22921 Actinidia chinensis HOM05D004696 ORTHO05D005645 4.7e-12 74.3 103 47.6
Dinv18020 Davidia involucrata HOM05D004696 ORTHO05D005645 4.7e-12 74.3 101 48.5
Lj6C700T16 Lonicera japonica HOM05D004696 ORTHO05D005645 1.1e-11 73.2 100 47.0
Cfa015727 Carpinus fangiana HOM05D004696 ORTHO05D005645 1.8e-11 72.4 102 42.2
Rhsim04G0248200 Rhododendron simsii HOM05D004696 ORTHO05D005645 1.8e-11 72.4 105 45.7
Peaxi162Scf00164g00414 Petunia axillaris HOM05D004696 ORTHO05D005645 4.0e-11 71.2 100 47.0
HanXRQChr09g0238571 Helianthus annuus HOM05D004696 ORTHO05D005645 6.8e-11 70.5 101 43.6
Haze_00771 Corylus avellana HOM05D004696 ORTHO05D005645 8.9e-11 70.1 100 42.0
TWI73G0566 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 8.9e-11 70.1 100 47.0
Manes.03G211700 Manihot esculenta HOM05D004696 ORTHO05D005645 2.6e-10 68.6 99 45.5
Nitab4.5_0008086g0030 Nicotiana tabacum HOM05D004696 ORTHO05D005645 2.6e-10 68.6 99 43.4
PGSC0003DMG400027150 Solanum tuberosum HOM05D004696 ORTHO05D005645 3.4e-10 68.2 101 41.6
TAR629G2307 Trochodendron aralioides HOM05D004696 ORTHO05D005645 3.4e-10 68.2 101 45.5
CAN.G305.38 Capsicum annuum HOM05D004696 ORTHO05D005645 5.8e-10 67.4 101 42.6
Lsat_1_v5_gn_1_39920 Lactuca sativa HOM05D004696 ORTHO05D005645 5.8e-10 67.4 101 42.6
Solyc05g053220.3 Solanum lycopersicum HOM05D004696 ORTHO05D005645 5.8e-10 67.4 101 41.6
Sopen05g031730 Solanum pennellii HOM05D004696 ORTHO05D005645 5.8e-10 67.4 101 41.6
Manes.11G020900 Manihot esculenta HOM05D004696 ORTHO05D005645 1.3e-09 66.2 101 43.6
QL06p014174 Quercus lobata HOM05D004696 ORTHO05D005645 3.7e-09 64.7 101 39.6
GSVIVG01017685001 Vitis vinifera HOM05D004696 ORTHO05D005645 3.7e-09 64.7 102 42.2
Lsat_1_v5_gn_6_92581 Lactuca sativa HOM05D004696 ORTHO05D005645 6.4e-09 63.9 100 42.0
Atru.chr4.3144 Acer truncatum HOM05D004696 ORTHO05D005645 8.3e-09 63.5 100 42.0
CsaV3_6G008150 Cucumis sativus L. HOM05D004696 ORTHO05D005645 8.3e-09 63.5 103 39.8
Thecc.04G312600 Theobroma cacao HOM05D004696 ORTHO05D005645 8.3e-09 63.5 104 43.3
CiPaw.02G069300 Carya illinoinensis HOM05D004696 ORTHO05D005645 1.1e-08 63.2 101 39.6
Sabra08G0150400 Salix brachista HOM05D004696 ORTHO05D005645 1.1e-08 63.2 105 41.9
THA.LOC104827108 Tarenaya hassleriana HOM05D004696 ORTHO05D005645 1.4e-08 62.8 102 40.2
Hma1.2p1_2234F.1_g317690 Hydrangea macrophylla HOM05D004696 ORTHO05D000003 1.9e-08 62.4 97 46.4
MELO3C035238.2 Cucumis melo HOM05D004696 ORTHO05D005645 2.4e-08 62.0 102 39.2
Duzib151G0078 Durio zibethinus HOM05D004696 ORTHO05D005645 2.4e-08 62.0 101 41.6
Gohir.D02G064000 Gossypium hirsutum HOM05D004696 ORTHO05D005645 3.2e-08 61.6 105 43.8
Gorai.005G071900 Gossypium raimondii HOM05D004696 ORTHO05D005645 3.2e-08 61.6 105 43.8
MD13G1140700 Malus domestica HOM05D004696 ORTHO05D005645 3.2e-08 61.6 102 39.2
Sc17g0002920 Simmondsia chinensis HOM05D004696 ORTHO05D005645 3.2e-08 61.6 101 37.6
Sabra02G0116500 Salix brachista HOM05D004696 ORTHO05D005645 4.1e-08 61.2 105 41.0
TWI09G0971 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 4.1e-08 61.2 101 41.6
Gohir.A02G058200 Gossypium hirsutum HOM05D004696 ORTHO05D005645 5.4e-08 60.8 103 41.7
MD07G1065600 Malus domestica HOM05D004696 ORTHO05D005645 5.4e-08 60.8 104 42.3
Medtr5g081850 Medicago truncatula HOM05D004696 ORTHO05D005645 5.4e-08 60.8 101 37.6
Nn3g16891 Nelumbo nucifera HOM05D004696 ORTHO05D005645 7.1e-08 60.5 100 41.0
Sabra02G0114900 Salix brachista HOM05D004696 ORTHO05D005645 7.1e-08 60.5 106 39.6
Sed0019137 Sechium edule HOM05D004696 ORTHO05D005645 7.1e-08 60.5 103 38.8
AT5G30495 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 9.2e-08 60.1 102 40.2
Carub.0002s0865 Capsella rubella HOM05D004696 ORTHO05D005645 1.2e-07 59.7 102 41.2
ClCG06G002080 Citrullus lanatus HOM05D004696 ORTHO05D005645 1.2e-07 59.7 102 38.2
Prupe.1G105700 Prunus persica HOM05D004696 ORTHO05D005645 1.2e-07 59.7 102 41.2
Thhalv10005420m.g Eutrema salsugineum HOM05D004696 ORTHO05D005645 1.6e-07 59.3 102 37.3
Glyma.01G218300 Glycine max HOM05D004696 ORTHO05D005645 1.6e-07 59.3 99 38.4
Potri.008G206400 Populus trichocarpa HOM05D004696 ORTHO05D005645 1.6e-07 59.3 106 39.6
AL6G41010 Arabidopsis lyrata HOM05D004696 ORTHO05D005645 2.1e-07 58.9 102 39.2
ECA220G0002 Erigeron canadensis HOM05D004696 ORTHO05D005645 2.1e-07 58.9 96 41.7
Glyma.14G125600 Glycine max HOM05D004696 ORTHO05D005645 2.1e-07 58.9 99 38.4
Actinidia01063 Actinidia chinensis HOM05D004696 ORTHO05D005645 2.7e-07 58.5 101 40.6
Eucgr.B03956 Eucalyptus grandis HOM05D004696 ORTHO05D005645 2.7e-07 58.5 101 41.6
MD16G1136700 Malus domestica HOM05D004696 ORTHO05D005645 3.5e-07 58.2 102 40.2
A09p05040 Brassica napus HOM05D004696 ORTHO05D005645 4.6e-07 57.8 99 40.4
BraA09t36143Z Brassica rapa HOM05D004696 ORTHO05D005645 4.6e-07 57.8 99 40.4
CANSAT78G0332 Cannabis sativa HOM05D004696 ORTHO05D005645 4.6e-07 57.8 99 39.4
Phvul.010G140500 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 4.6e-07 57.8 99 38.4
Lalb_Chr10g0096421 Lupinus albus HOM05D004696 ORTHO05D005645 6.0e-07 57.4 103 38.8
Psat7g133720 Pisum sativum HOM05D004696 ORTHO05D005645 6.0e-07 57.4 101 36.6
BcaC04g23715 Brassica carinata HOM05D004696 ORTHO05D005645 7.8e-07 57.0 99 40.4
C09p05450 Brassica napus HOM05D004696 ORTHO05D005645 7.8e-07 57.0 99 40.4
Cpa.g.sc146.25 Carica papaya HOM05D004696 ORTHO05D005645 7.8e-07 57.0 99 37.4
Ciclev10005920m.g Citrus clementina HOM05D004696 ORTHO05D005645 1.0e-06 56.6 102 37.3
MBI03_g01483_MAGBIO Magnolia biondii HOM05D004696 ORTHO05D005645 1.0e-06 56.6 105 35.2
SGA_v2.0_scaffold69G23291 Striga asiatica HOM05D004696 ORTHO05D005645 1.0e-06 56.6 99 40.4
Oeu037627.2 Olea europaea HOM05D004696 ORTHO05D005645 1.3e-06 56.2 97 42.3
Glyma.11G024900 Glycine max HOM05D004696 ORTHO05D005645 1.7e-06 55.8 99 39.4
Lj2g0021207 Lotus japonicus HOM05D004696 ORTHO05D005645 1.7e-06 55.8 101 37.6
RcHm_v2.0_Chr4g0427481 Rosa chinensis HOM05D004696 ORTHO05D005645 1.7e-06 55.8 102 38.2
BcaB04g19639 Brassica carinata HOM05D004696 ORTHO05D005645 2.3e-06 55.5 102 36.3
BolC9t53474H Brassica oleracea HOM05D004696 ORTHO05D005645 2.3e-06 55.5 99 39.4
Aqoxy4G02417 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 3.0e-06 55.1 103 38.8
CARHR185500 Cardamine hirsuta HOM05D004696 ORTHO05D005645 3.0e-06 55.1 102 38.2
Migut.N00002 Erythranthe guttata HOM05D004696 ORTHO05D005645 3.0e-06 55.1 100 37.0
Phvul.003G045400 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 3.0e-06 55.1 101 35.6
Potri.010G002100 Populus trichocarpa HOM05D004696 ORTHO05D005645 3.0e-06 55.1 97 40.2
EL10Ac4g08571 Beta vulgaris HOM05D004696 ORTHO05D005645 3.9e-06 54.7 98 37.8
Lalb_Chr17g0338851 Lupinus albus HOM05D004696 ORTHO05D005645 3.9e-06 54.7 102 36.3
Sp2g19960 Schrenkiella parvula HOM05D004696 ORTHO05D005645 5.1e-06 54.3 104 37.5
Psat1g042400 Pisum sativum HOM05D004696 ORTHO05D005645 6.6e-06 53.9 102 34.3
PGR031G3538 Punica granatum HOM05D004696 ORTHO05D005645 8.6e-06 53.5 103 38.8
TPR.G8061 Trifolium pratense HOM05D004696 ORTHO05D005645 8.6e-06 53.5 102 32.4
VMungo0331G1167 Vigna mungo HOM05D004696 ORTHO05D005645 8.6e-06 53.5 101 36.6


User provided reference genes

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