Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030900 Camellia sinensis var. sinensis HOM05D006737 ORTHO05D008418 3.7e-185 651.4 323 100.0
vmacro02447 Vaccinium macrocarpon HOM05D006737 ORTHO05D008418 2.6e-130 469.2 326 75.2
Haze_04944 Corylus avellana HOM05D006737 ORTHO05D008418 1.4e-123 446.8 317 71.9
Cfa005906 Carpinus fangiana HOM05D006737 ORTHO05D008418 1.2e-122 443.7 319 72.1
MD03G1288800 Malus domestica HOM05D006737 ORTHO05D008418 5.0e-121 438.3 324 67.6
Prupe.8G262100 Prunus persica HOM05D006737 ORTHO05D008418 5.0e-121 438.3 324 68.8
Atru.chr5.1140 Acer truncatum HOM05D006737 ORTHO05D008418 6.5e-121 438.0 326 68.7
RcHm_v2.0_Chr6g0294111 Rosa chinensis HOM05D006737 ORTHO05D008418 8.5e-121 437.6 317 68.8
Ciclev10021225m.g Citrus clementina HOM05D006737 ORTHO05D008418 4.2e-120 435.3 325 68.6
Rhsim13G0009900 Rhododendron simsii HOM05D006737 ORTHO05D008418 4.2e-120 435.3 330 70.6
MD11G1309100 Malus domestica HOM05D006737 ORTHO05D008418 2.7e-119 432.6 324 68.5
FAN24G1027 Fragaria x ananassa HOM05D006737 ORTHO05D008418 4.6e-119 431.8 317 69.7
FAN15G3576 Fragaria x ananassa HOM05D006737 ORTHO05D008418 6.1e-119 431.4 317 69.7
FvH4_2g25800 Fragaria vesca HOM05D006737 ORTHO05D008418 1.4e-118 430.3 317 69.4
FAN27G1696 Fragaria x ananassa HOM05D006737 ORTHO05D008418 4.8e-116 421.8 330 66.7
TWI14G0449 Tripterygium wilfordii HOM05D006737 ORTHO05D008418 6.9e-115 417.9 317 67.5
GSVIVG01028025001 Vitis vinifera HOM05D006737 ORTHO05D008418 6.9e-115 417.9 315 68.6
Potri.002G203900 Populus trichocarpa HOM05D006737 ORTHO05D008418 1.2e-114 417.2 317 67.5
TAR365G0544 Trochodendron aralioides HOM05D006737 ORTHO05D008418 1.2e-114 417.2 326 69.0
CiPaw.07G109800 Carya illinoinensis HOM05D006737 ORTHO05D008418 7.7e-114 414.5 354 63.6
Nn3g21504 Nelumbo nucifera HOM05D006737 ORTHO05D008418 2.2e-113 412.9 323 66.9
Manes.01G219800 Manihot esculenta HOM05D006737 ORTHO05D008418 3.8e-113 412.1 315 65.4
Gorai.008G144900 Gossypium raimondii HOM05D006737 ORTHO05D008418 6.5e-113 411.4 327 63.9
Cpa.g.sc9.256 Carica papaya HOM05D006737 ORTHO05D008418 7.2e-112 407.9 309 66.7
Gohir.D12G133900 Gossypium hirsutum HOM05D006737 ORTHO05D008418 2.1e-111 406.4 327 63.3
Thecc.01G301300 Theobroma cacao HOM05D006737 ORTHO05D008418 2.7e-111 406.0 359 61.6
Gohir.A12G130100 Gossypium hirsutum HOM05D006737 ORTHO05D008418 3.6e-111 405.6 327 63.3
Sabra02G0155300 Salix brachista HOM05D006737 ORTHO05D008418 1.1e-109 400.6 366 58.2
FAN20G1602 Fragaria x ananassa HOM05D006737 ORTHO05D008418 3.3e-109 399.1 312 66.7
QL12p028401 Quercus lobata HOM05D006737 ORTHO05D008418 9.1e-107 391.0 316 63.6
CiPaw.07G109600 Carya illinoinensis HOM05D006737 ORTHO05D008418 5.0e-105 385.2 256 73.8
Actinidia01489 Actinidia chinensis HOM05D006737 ORTHO05D008418 3.2e-104 382.5 238 79.0
Hma1.2p1_0491F.1_g164620 Hydrangea macrophylla HOM05D006737 ORTHO05D008418 9.4e-104 380.9 301 66.4
Lj6g0001904 Lotus japonicus HOM05D006737 ORTHO05D008418 4.7e-103 378.6 285 66.3
Gohir.A08G076400 Gossypium hirsutum HOM05D006737 ORTHO05D008418 5.7e-101 371.7 286 65.4
Eucgr.H01107 Eucalyptus grandis HOM05D006737 ORTHO05D008418 7.5e-101 371.3 305 61.6
Gohir.D08G085900 Gossypium hirsutum HOM05D006737 ORTHO05D008418 7.5e-101 371.3 286 65.7
Gorai.004G090400 Gossypium raimondii HOM05D006737 ORTHO05D008418 1.3e-100 370.5 286 65.7
MBI19_g26092_MAGBIO Magnolia biondii HOM05D006737 ORTHO05D008418 6.3e-100 368.2 309 61.8
PGR119G0152 Punica granatum HOM05D006737 ORTHO05D008418 8.2e-100 367.9 319 58.3
PSO170G1161 Papaver somniferum HOM05D006737 ORTHO05D008418 1.1e-99 367.5 307 62.2
PSO407G0435 Papaver somniferum HOM05D006737 ORTHO05D008418 2.4e-99 366.3 320 60.6
CANSAT25G2451 Cannabis sativa HOM05D006737 ORTHO05D008418 1.7e-97 360.1 320 60.0
Aqoxy2G02933 Aquilegia oxysepala HOM05D006737 ORTHO05D008418 2.2e-97 359.8 312 60.9
Glyma.19G211400 Glycine max HOM05D006737 ORTHO05D008418 3.8e-97 359.0 324 59.6
Solyc06g084570.4 Solanum lycopersicum HOM05D006737 ORTHO05D008418 4.2e-96 355.5 294 61.2
MSTRG.12607 Avicennia marina HOM05D006737 ORTHO05D008418 2.7e-95 352.8 322 57.1
Lsat_1_v5_gn_8_164261 Lactuca sativa HOM05D006737 ORTHO05D008418 2.7e-95 352.8 316 56.6
ECA236G1530 Erigeron canadensis HOM05D006737 ORTHO05D008418 3.6e-95 352.4 334 56.0
Sopen06g035940 Solanum pennellii HOM05D006737 ORTHO05D008418 3.6e-95 352.4 290 62.1
CAN.G1209.24 Capsicum annuum HOM05D006737 ORTHO05D008418 1.4e-94 350.5 292 61.6
Phvul.001G207600 Phaseolus vulgaris HOM05D006737 ORTHO05D008418 8.8e-94 347.8 305 59.0
Hund05430 Selenicereus undatus HOM05D006737 ORTHO05D008418 2.0e-93 346.7 302 58.3
AUR62008669 Chenopodium quinoa HOM05D006737 ORTHO05D008418 4.4e-93 345.5 287 60.3
SalBow2G2271 Salvia bowleyana HOM05D006737 ORTHO05D008418 1.7e-92 343.6 256 62.5
ClCG01G014930 Citrullus lanatus HOM05D006737 ORTHO05D008418 3.7e-92 342.4 323 56.3
EL10Ac7g17513 Beta vulgaris HOM05D006737 ORTHO05D008418 4.8e-92 342.0 301 56.5
Nitab4.5_0004367g0110 Nicotiana tabacum HOM05D006737 ORTHO05D008418 6.3e-92 341.7 367 51.2
Oeu048335.1 Olea europaea HOM05D006737 ORTHO05D008418 6.3e-92 341.7 235 69.4
CsaV3_6G041030 Cucumis sativus L. HOM05D006737 ORTHO05D008418 1.4e-91 340.5 313 56.5
MBI19_g25361_MAGBIO Magnolia biondii HOM05D006737 ORTHO05D008418 7.0e-91 338.2 352 53.7
AUR62025575 Chenopodium quinoa HOM05D006737 ORTHO05D008418 1.2e-90 337.4 287 59.2
Duzib138G1512 Durio zibethinus HOM05D006737 ORTHO05D008418 2.0e-90 336.7 262 67.9
MELO3C024580.2 Cucumis melo HOM05D006737 ORTHO05D008418 2.7e-90 336.3 324 55.6
arahy.Tifrunner.gnm1.ann1.AY1VU4 Arachis hypogaea HOM05D006737 ORTHO05D008418 1.0e-89 334.3 297 58.9
AL6G50710 Arabidopsis lyrata HOM05D006737 ORTHO05D008418 6.5e-89 331.6 282 58.9
DCAR_002840 Daucus carota HOM05D006737 ORTHO05D008418 2.5e-88 329.7 327 53.8
Peaxi162Scf00140g01213 Petunia axillaris HOM05D006737 ORTHO05D008418 7.2e-88 328.2 260 64.6
Sc05g0003760 Simmondsia chinensis HOM05D006737 ORTHO05D008418 2.1e-87 326.6 298 57.0
SGA_v2.0_scaffold198G41142 Striga asiatica HOM05D006737 ORTHO05D008418 1.8e-86 323.6 324 54.3
VMungo1383G2597 Vigna mungo HOM05D006737 ORTHO05D008418 2.3e-86 323.2 258 63.2
Carub.0006s3475 Capsella rubella HOM05D006737 ORTHO05D008418 3.0e-86 322.8 283 58.3
Thhalv10028823m.g Eutrema salsugineum HOM05D006737 ORTHO05D008418 1.2e-85 320.9 308 55.2
Aa31LG5G2050 Aethionema arabicum HOM05D006737 ORTHO05D008418 1.5e-85 320.5 297 55.6
Migut.N01508 Erythranthe guttata HOM05D006737 ORTHO05D008418 4.4e-85 318.9 309 54.7
Migut.O00484 Erythranthe guttata HOM05D006737 ORTHO05D008418 5.7e-85 318.5 309 54.7
BcaC01g06761 Brassica carinata HOM05D006737 ORTHO05D008418 1.3e-84 317.4 292 57.2
BcaB01g02446 Brassica carinata HOM05D006737 ORTHO05D008418 1.7e-84 317.0 301 54.5
CDE01G0235 Ceratophyllum demersum HOM05D006737 ORTHO05D008418 3.7e-84 315.8 317 51.1
Lalb_Chr02g0146391 Lupinus albus HOM05D006737 ORTHO05D008418 6.3e-84 315.1 298 55.7
CARHR250600 Cardamine hirsuta HOM05D006737 ORTHO05D008418 1.8e-83 313.5 289 55.0
Cc01_g20900 Coffea canephora HOM05D006737 ORTHO05D008418 9.2e-83 311.2 326 52.1
Sp6g02290 Schrenkiella parvula HOM05D006737 ORTHO05D008418 9.2e-83 311.2 316 53.8
COL.COLO4_23338 Corchorus olitorius HOM05D006737 ORTHO05D008418 2.7e-82 309.7 211 72.0
BolC3t16077H Brassica oleracea HOM05D006737 ORTHO05D008418 5.9e-82 308.5 313 52.4
C03p37890 Brassica napus HOM05D006737 ORTHO05D008418 7.8e-82 308.1 314 52.5
HanXRQChr04g0114161 Helianthus annuus HOM05D006737 ORTHO05D008418 7.8e-82 308.1 259 59.5
Migut.J01135 Erythranthe guttata HOM05D006737 ORTHO05D008418 1.0e-81 307.8 284 56.7
arahy.Tifrunner.gnm1.ann1.B4PCIP Arachis hypogaea HOM05D006737 ORTHO05D008418 2.9e-81 306.2 264 59.5
A03p31080 Brassica napus HOM05D006737 ORTHO05D008418 1.6e-79 300.4 312 52.2
BraA03t12285Z Brassica rapa HOM05D006737 ORTHO05D008418 1.6e-79 300.4 312 52.2
AT4G02405 Arabidopsis thaliana HOM05D006737 ORTHO05D008418 6.6e-73 278.5 259 54.4
Lj2A1195G25 Lonicera japonica HOM05D006737 ORTHO05D008418 4.0e-70 269.2 273 53.8
Os07g0247100 Oryza sativa ssp. japonica HOM05D006737 ORTHO05D008418 4.0e-70 269.2 291 46.7
Sed0017513 Sechium edule HOM05D006737 ORTHO05D008418 5.4e-67 258.8 244 56.1
Zm00001eb097030 Zea mays HOM05D006737 ORTHO05D008418 1.9e-64 250.4 303 44.2
Dinv33057 Davidia involucrata HOM05D006737 ORTHO05D008418 1.6e-58 230.7 174 71.3
Pp3c24_12380 Physcomitrium patens HOM05D006737 ORTHO05D008418 1.1e-46 191.4 297 39.4
Nitab4.5_0002820g0110 Nicotiana tabacum HOM05D006737 ORTHO05D008418 4.6e-42 176.0 140 65.0
Oeu010666.1 Olea europaea HOM05D006737 ORTHO05D008418 6.6e-41 172.2 133 61.7
PGSC0003DMG400024036 Solanum tuberosum HOM05D006737 ORTHO05D008418 5.6e-40 169.1 129 61.2
arahy.Tifrunner.gnm1.ann1.MB1A81 Arachis hypogaea HOM05D006737 ORTHO05D008418 3.3e-32 143.3 124 58.9
Mapoly0132s0018 Marchantia polymorpha HOM05D006737 ORTHO05D008418 1.4e-30 137.9 235 34.0
VMungo1383G3174 Vigna mungo HOM05D006737 ORTHO05D008418 1.3e-28 131.3 255 33.7
Dinv31287 Davidia involucrata HOM05D006737 ORTHO05D008418 1.8e-25 120.9 86 68.6
Dinv07247 Davidia involucrata HOM05D006737 ORTHO05D008418 5.1e-25 119.4 86 67.4
Dinv17961 Davidia involucrata HOM05D006737 ORTHO05D008418 8.7e-25 118.6 108 56.5
arahy.Tifrunner.gnm1.ann1.MU6BTE Arachis hypogaea HOM05D006737 ORTHO05D008418 1.1e-24 118.2 116 50.9
SEGI_39136 Sequoiadendron giganteum HOM05D006737 ORTHO05D008418 3.5e-18 96.7 142 38.0
Dinv02523 Davidia involucrata HOM05D006737 ORTHO05D008418 3.8e-12 76.6 56 66.1
BcaB01g02447 Brassica carinata HOM05D006737 ORTHO05D008418 8.5e-12 75.5 63 60.3
BcaB01g02050 Brassica carinata HOM05D006737 ORTHO05D008418 4.2e-11 73.2 101 43.6
Dinv32677 Davidia involucrata HOM05D006737 ORTHO05D008418 2.7e-10 70.5 53 58.5
Atru.chr9.1259 Acer truncatum HOM05D000593 ORTHO05D002268 3.3e-08 63.5 38 81.6
Atru.chr3.1390 Acer truncatum HOM05D000593 ORTHO05D000562 7.4e-08 62.4 38 78.9
MCO02G241 Micromonas commoda HOM05D006737 ORTHO05D008418 4.8e-07 59.7 214 22.4
PGR031G2630 Punica granatum HOM05D006598 ORTHO05D008132 4.1e-06 56.6 173 29.5


User provided reference genes

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