Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030898 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 5.5e-130 467.6 233 100.0
CSS0034871 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 5.5e-114 414.5 243 87.2
Actinidia09471 Actinidia chinensis HOM05D004853 ORTHO05D005865 1.5e-106 389.8 243 80.7
Actinidia23713 Actinidia chinensis HOM05D004853 ORTHO05D005865 3.3e-106 388.7 243 80.2
Rhsim09G0044900 Rhododendron simsii HOM05D004853 ORTHO05D005865 1.6e-105 386.3 243 79.4
Dinv19180 Davidia involucrata HOM05D004853 ORTHO05D005865 2.2e-102 375.9 243 77.8
Dinv12655 Davidia involucrata HOM05D004853 ORTHO05D005865 8.3e-102 374.0 243 77.4
Hma1.2p1_0226F.1_g095440 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 4.1e-101 371.7 243 77.8
Hma1.2p1_2668F.1_g326580 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 4.1e-101 371.7 243 77.8
DCAR_004733 Daucus carota HOM05D004853 ORTHO05D005865 1.5e-98 363.2 243 74.9
Lj3C839T9 Lonicera japonica HOM05D004853 ORTHO05D005865 1.5e-98 363.2 240 76.7
DCAR_004725 Daucus carota HOM05D004853 ORTHO05D005865 1.2e-97 360.1 243 74.5
CAN.G128.1 Capsicum annuum HOM05D004853 ORTHO05D005865 1.4e-96 356.7 243 73.7
PGSC0003DMG400027946 Solanum tuberosum HOM05D004853 ORTHO05D005865 3.1e-96 355.5 243 72.4
CAN.G257.5 Capsicum annuum HOM05D004853 ORTHO05D005865 4.0e-96 355.1 243 73.3
Solyc09g059440.1 Solanum lycopersicum HOM05D004853 ORTHO05D005865 1.2e-95 353.6 243 72.0
Sopen09g022590 Solanum pennellii HOM05D004853 ORTHO05D005865 1.2e-95 353.6 243 72.0
Eucgr.H00778 Eucalyptus grandis HOM05D004853 ORTHO05D005865 1.5e-95 353.2 243 72.8
Nitab4.5_0000045g0440 Nicotiana tabacum HOM05D004853 ORTHO05D005865 2.0e-95 352.8 243 72.4
Peaxi162Scf00238g00032 Petunia axillaris HOM05D004853 ORTHO05D005865 5.8e-95 351.3 243 71.6
Nitab4.5_0007437g0010 Nicotiana tabacum HOM05D004853 ORTHO05D005865 1.3e-94 350.1 243 71.6
Cc01_g16780 Coffea canephora HOM05D004853 ORTHO05D005865 2.9e-94 349.0 243 72.0
Migut.D02501 Erythranthe guttata HOM05D004853 ORTHO05D005865 1.1e-93 347.1 243 71.2
ECA236G0997 Erigeron canadensis HOM05D004853 ORTHO05D005865 1.4e-93 346.7 243 71.6
Nn7g37081 Nelumbo nucifera HOM05D004853 ORTHO05D005865 1.4e-93 346.7 243 71.2
GSVIVG01000797001 Vitis vinifera HOM05D004853 ORTHO05D005865 1.4e-93 346.7 243 72.0
Cfa004377 Carpinus fangiana HOM05D004853 ORTHO05D005865 5.4e-93 344.7 243 70.8
Oeu037767.1 Olea europaea HOM05D004853 ORTHO05D005865 5.4e-93 344.7 243 71.2
HanXRQChr10g0288791 Helianthus annuus HOM05D004853 ORTHO05D005865 2.0e-92 342.8 243 70.8
HanXRQChr14g0439971 Helianthus annuus HOM05D004853 ORTHO05D005865 2.0e-92 342.8 243 70.8
MSTRG.18839 Avicennia marina HOM05D004853 ORTHO05D005865 2.7e-92 342.4 243 70.4
CANSAT01G2121 Cannabis sativa HOM05D004853 ORTHO05D005865 2.7e-92 342.4 243 70.0
SalBow6G4054 Salvia bowleyana HOM05D004853 ORTHO05D005865 3.5e-92 342.0 243 70.0
COL.COLO4_15628 Corchorus olitorius HOM05D004853 ORTHO05D005865 4.6e-92 341.7 243 70.0
Potri.015G090600 Populus trichocarpa HOM05D004853 ORTHO05D005865 6.0e-92 341.3 243 70.4
Cpa.g.sc43.113 Carica papaya HOM05D004853 ORTHO05D005865 7.8e-92 340.9 243 70.0
Atru.chr6.1420 Acer truncatum HOM05D004853 ORTHO05D005865 1.3e-91 340.1 243 70.4
Manes.13G048900 Manihot esculenta HOM05D004853 ORTHO05D005865 1.3e-91 340.1 243 69.5
TAR623G1093 Trochodendron aralioides HOM05D004853 ORTHO05D005865 1.3e-91 340.1 243 69.5
CiPaw.01G049500 Carya illinoinensis HOM05D004853 ORTHO05D005865 1.7e-91 339.7 243 69.5
Ciclev10019411m.g Citrus clementina HOM05D004853 ORTHO05D005865 2.3e-91 339.3 243 69.1
Sed0013559 Sechium edule HOM05D004853 ORTHO05D005865 2.3e-91 339.3 243 69.5
Lsat_1_v5_gn_8_89600 Lactuca sativa HOM05D004853 ORTHO05D005865 3.0e-91 339.0 248 71.4
QL09p051756 Quercus lobata HOM05D004853 ORTHO05D005865 3.9e-91 338.6 243 68.7
QL09p052469 Quercus lobata HOM05D004853 ORTHO05D005865 3.9e-91 338.6 243 68.7
Gohir.A07G199600 Gossypium hirsutum HOM05D004853 ORTHO05D005865 5.0e-91 338.2 243 68.7
Gohir.D07G206000 Gossypium hirsutum HOM05D004853 ORTHO05D005865 6.6e-91 337.8 243 68.7
Haze_15035 Corylus avellana HOM05D004853 ORTHO05D005865 1.5e-90 336.7 239 70.3
SGA_v2.0_scaffold18G08333 Striga asiatica HOM05D004853 ORTHO05D005865 1.5e-90 336.7 242 68.6
TWI36G0697 Tripterygium wilfordii HOM05D004853 ORTHO05D005865 1.5e-90 336.7 243 68.7
AUR62043704 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.9e-90 336.3 243 67.9
Duzib133G1132 Durio zibethinus HOM05D004853 ORTHO05D005865 1.9e-90 336.3 243 68.7
CiPaw.02G023000 Carya illinoinensis HOM05D004853 ORTHO05D005865 3.3e-90 335.5 243 68.3
AUR62038821 Chenopodium quinoa HOM05D004853 ORTHO05D005865 3.3e-90 335.5 243 67.5
Gorai.001G232300 Gossypium raimondii HOM05D004853 ORTHO05D005865 3.3e-90 335.5 243 68.3
CsaV3_7G026150 Cucumis sativus L. HOM05D004853 ORTHO05D005865 9.5e-90 334.0 243 67.1
Thecc.01G221500 Theobroma cacao HOM05D004853 ORTHO05D005865 9.5e-90 334.0 243 68.3
Ca_06554_v3 Cicer arietinum L. HOM05D004853 ORTHO05D005865 1.2e-89 333.6 243 68.3
ClCG09G008800 Citrullus lanatus HOM05D004853 ORTHO05D005865 1.2e-89 333.6 243 66.7
MELO3C021058.2 Cucumis melo HOM05D004853 ORTHO05D005865 1.2e-89 333.6 243 67.1
PSO384G4190 Papaver somniferum HOM05D004853 ORTHO05D005865 3.6e-89 332.0 243 68.7
Gohir.A11G139300 Gossypium hirsutum HOM05D004853 ORTHO05D005865 4.7e-89 331.6 243 66.7
EL10Ac7g17891 Beta vulgaris HOM05D004853 ORTHO05D005865 6.2e-89 331.3 243 66.7
Gohir.D11G145500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 6.2e-89 331.3 243 66.3
TAR376G0972 Trochodendron aralioides HOM05D004853 ORTHO05D005865 8.1e-89 330.9 243 68.3
Glyma.18G167000 Glycine max HOM05D004853 ORTHO05D005865 1.1e-88 330.5 243 69.5
Glyma.08G349400 Glycine max HOM05D004853 ORTHO05D005865 1.8e-88 329.7 243 68.7
FAN24G1506 Fragaria x ananassa HOM05D004853 ORTHO05D005865 3.1e-88 328.9 243 65.0
MD05G1172300 Malus domestica HOM05D004853 ORTHO05D005865 4.0e-88 328.6 243 67.5
Sc17g0002190 Simmondsia chinensis HOM05D004853 ORTHO05D005865 4.0e-88 328.6 242 66.5
Psat3g148200 Pisum sativum HOM05D004853 ORTHO05D005865 5.2e-88 328.2 243 66.7
Aqoxy1G00113 Aquilegia oxysepala HOM05D004853 ORTHO05D005865 6.8e-88 327.8 243 67.1
FAN27G1226 Fragaria x ananassa HOM05D004853 ORTHO05D005865 6.8e-88 327.8 243 65.4
Duzib138G1868 Durio zibethinus HOM05D004853 ORTHO05D005865 8.9e-88 327.4 243 67.5
FvH4_2g18640 Fragaria vesca HOM05D004853 ORTHO05D005865 8.9e-88 327.4 243 65.0
FAN15G3437 Fragaria x ananassa HOM05D004853 ORTHO05D005865 8.9e-88 327.4 243 65.0
RcHm_v2.0_Chr6g0284201 Rosa chinensis HOM05D004853 ORTHO05D005865 8.9e-88 327.4 243 65.0
MD10G1160500 Malus domestica HOM05D004853 ORTHO05D005865 1.2e-87 327.0 243 67.1
Sabra15G0112700 Salix brachista HOM05D004853 ORTHO05D005865 2.6e-87 325.9 243 67.5
Phvul.008G130700 Phaseolus vulgaris HOM05D004853 ORTHO05D005865 4.4e-87 325.1 242 68.2
Gorai.007G156000 Gossypium raimondii HOM05D004853 ORTHO05D005865 5.8e-87 324.7 243 65.4
AT3G25100 Arabidopsis thaliana HOM05D004853 ORTHO05D005865 7.5e-87 324.3 243 65.8
Medtr7g056153 Medicago truncatula HOM05D004853 ORTHO05D005865 7.5e-87 324.3 243 65.4
BcaB06g26724 Brassica carinata HOM05D004853 ORTHO05D005865 2.9e-86 322.4 243 65.8
BcaB08g34434 Brassica carinata HOM05D004853 ORTHO05D005865 2.9e-86 322.4 243 65.4
BcaC06g35779 Brassica carinata HOM05D004853 ORTHO05D005865 2.9e-86 322.4 243 65.8
A07p07260 Brassica napus HOM05D004853 ORTHO05D005865 2.9e-86 322.4 243 65.8
BolC7t41562H Brassica oleracea HOM05D004853 ORTHO05D005865 2.9e-86 322.4 243 65.8
Prupe.8G199700 Prunus persica HOM05D004853 ORTHO05D005865 2.9e-86 322.4 243 65.8
Thhalv10002454m.g Eutrema salsugineum HOM05D004853 ORTHO05D005865 3.7e-86 322.0 243 65.4
AL3G40790 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 4.9e-86 321.6 243 65.8
BraA03t13534Z Brassica rapa HOM05D004853 ORTHO05D005865 6.4e-86 321.2 243 65.0
unitig_899.g15017 Utricularia gibba HOM05D004853 ORTHO05D005865 6.4e-86 321.2 244 66.8
BraA07t28514Z Brassica rapa HOM05D004853 ORTHO05D005865 8.3e-86 320.9 243 65.4
CARHR101430 Cardamine hirsuta HOM05D004853 ORTHO05D005865 8.3e-86 320.9 243 65.0
Sp3g22680 Schrenkiella parvula HOM05D004853 ORTHO05D005865 8.3e-86 320.9 243 65.4
unitig_736.g22343 Utricularia gibba HOM05D004853 ORTHO05D005865 8.3e-86 320.9 244 66.4
MBI19_g34091_MAGBIO Magnolia biondii HOM05D004853 ORTHO05D005865 1.4e-85 320.1 243 65.8
BcaC01g03244 Brassica carinata HOM05D004853 ORTHO05D005865 4.1e-85 318.5 243 64.6
C03p54420 Brassica napus HOM05D004853 ORTHO05D005865 4.1e-85 318.5 243 64.6
BolC3t17728H Brassica oleracea HOM05D004853 ORTHO05D005865 4.1e-85 318.5 243 64.6
Lalb_Chr03g0041521 Lupinus albus HOM05D004853 ORTHO05D005865 4.1e-85 318.5 243 66.3
THA.LOC104808789 Tarenaya hassleriana HOM05D004853 ORTHO05D005865 1.2e-84 317.0 244 66.0
VMungo1383G0658 Vigna mungo HOM05D004853 ORTHO05D005865 2.1e-84 316.2 242 66.5
Aa31LG8G11930 Aethionema arabicum HOM05D004853 ORTHO05D005865 3.5e-84 315.5 243 65.0
Carub.0003s2543 Capsella rubella HOM05D004853 ORTHO05D005865 3.9e-83 312.0 243 63.4
Aa31LG9G4920 Aethionema arabicum HOM05D004853 ORTHO05D005865 1.5e-82 310.1 244 63.5
TPR.G6418 Trifolium pratense HOM05D004853 ORTHO05D005865 5.6e-82 308.1 277 57.4
CDE04G0889 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 6.8e-80 301.2 243 62.6
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 1.2e-79 300.4 240 63.3
Lj1g0018468 Lotus japonicus HOM05D004853 ORTHO05D005865 7.6e-79 297.7 253 60.9
Ah.15g093470 Amaranthus hybridus HOM05D004853 ORTHO05D005865 1.7e-78 296.6 243 61.7
Os11g0128400 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 8.4e-78 294.3 247 61.1
Os12g0124700 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 8.4e-78 294.3 247 61.1
ATR0068G062 Amborella trichopoda HOM05D004853 ORTHO05D005865 1.7e-75 286.6 242 60.7
Gohir.D07G205900 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.7e-75 286.6 243 60.5
Gohir.A07G199500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 5.1e-75 285.0 243 59.7
Zm00001eb405460 Zea mays HOM05D004853 ORTHO05D005865 5.1e-75 285.0 247 59.5
Gorai.001G232100 Gossypium raimondii HOM05D004853 ORTHO05D005865 1.7e-67 260.0 214 62.1
A03p44030 Brassica napus HOM05D004853 ORTHO05D005865 2.8e-65 252.7 197 63.5
C07p10970 Brassica napus HOM05D004853 ORTHO05D005865 3.6e-65 252.3 197 63.5
SEGI_13565 Sequoiadendron giganteum HOM05D004853 ORTHO05D005865 9.9e-63 244.2 243 52.7
SMO307G0064 Selaginella moellendorffii HOM05D004853 ORTHO05D005865 3.1e-48 196.1 243 43.2
AL706U10010 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 1.7e-46 190.3 141 66.7
AagrBONN_evm.TU.Sc2ySwM_117.731 Anthoceros agrestis HOM05D004853 ORTHO05D005865 5.5e-45 185.3 243 42.4
Pp3c23_19980 Physcomitrium patens HOM05D004853 ORTHO05D005865 8.5e-38 161.4 243 39.1
Mapoly0045s0042 Marchantia polymorpha HOM05D004853 ORTHO05D005865 1.7e-33 147.1 247 37.2
arahy.Tifrunner.gnm1.ann1.23GIHT Arachis hypogaea HOM05D004853 ORTHO05D005865 9.1e-32 141.4 137 54.7
CAN.G186.62 Capsicum annuum HOM05D004853 ORTHO05D005865 4.7e-28 129.0 86 72.1
Ah.03g146210 Amaranthus hybridus HOM05D004853 ORTHO05D005865 1.0e-27 127.9 123 54.5
CBR_g40148 Chara braunii HOM05D004853 ORTHO05D005865 5.3e-24 115.5 247 32.8
BraA03t13535Z Brassica rapa HOM05D004853 ORTHO05D005865 1.7e-22 110.5 75 65.3
A03p44050 Brassica napus HOM05D004853 ORTHO05D005865 8.5e-22 108.2 81 60.5
MCO03G169 Micromonas commoda HOM05D004853 ORTHO05D005865 1.6e-20 104.0 262 27.5
CSS0045377 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 3.6e-20 102.8 160 41.2
AUR62016553 Chenopodium quinoa HOM05D004853 ORTHO05D005865 2.2e-17 93.6 78 57.7
CBR_g23402 Chara braunii HOM05D004853 ORTHO05D005865 2.6e-10 70.1 115 37.4
AUR62016554 Chenopodium quinoa HOM05D004853 ORTHO05D005865 5.9e-07 58.9 57 50.9


User provided reference genes

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