Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030856 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 3.2e-97 358.6 206 100.0
CSS0048553 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 1.3e-69 266.9 206 83.5
CSS0013049 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 5.0e-50 201.8 144 88.9
CSS0050514 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 1.6e-40 170.2 144 79.2
MSTRG.14503 Avicennia marina HOM05D004577 ORTHO05D005062 2.7e-40 169.5 145 75.2
Migut.M01633 Erythranthe guttata HOM05D004577 ORTHO05D005062 2.7e-40 169.5 144 76.4
Oeu021394.1 Olea europaea HOM05D004577 ORTHO05D005062 2.3e-39 166.4 146 76.0
MSTRG.13031 Avicennia marina HOM05D004577 ORTHO05D005062 7.5e-38 161.4 143 74.8
TAR629G1725 Trochodendron aralioides HOM05D004577 ORTHO05D005062 1.1e-36 157.5 143 74.1
Dinv40884 Davidia involucrata HOM05D002691 ORTHO05D003304 2.4e-36 156.4 199 59.3
TAR627G0729 Trochodendron aralioides HOM05D004577 ORTHO05D005062 2.4e-36 156.4 142 74.6
PGSC0003DMG400014846 Solanum tuberosum HOM05D004577 ORTHO05D005062 4.1e-36 155.6 144 74.3
PGSC0003DMG400016552 Solanum tuberosum HOM05D004577 ORTHO05D005062 2.0e-35 153.3 144 71.5
Solyc04g051850.3 Solanum lycopersicum HOM05D004577 ORTHO05D005062 2.7e-35 152.9 144 70.8
Cc10_g02580 Coffea canephora HOM05D004577 ORTHO05D005062 4.5e-35 152.1 144 72.2
Sopen08g002020 Solanum pennellii HOM05D004577 ORTHO05D005062 1.7e-34 150.2 144 69.4
Sopen04g023180 Solanum pennellii HOM05D004577 ORTHO05D005062 8.6e-34 147.9 144 69.4
Solyc08g006050.2 Solanum lycopersicum HOM05D004577 ORTHO05D005062 2.8e-32 142.9 144 70.1
Nn1g08321 Nelumbo nucifera HOM05D004577 ORTHO05D005062 8.9e-31 137.9 111 80.2
unitig_578.g16418 Utricularia gibba HOM05D004577 ORTHO05D005062 8.9e-31 137.9 141 71.6
Sc22g0002120 Simmondsia chinensis HOM05D004577 ORTHO05D005062 1.5e-30 137.1 121 77.7
MBI15_g38535_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 3.4e-30 136.0 129 71.3
Peaxi162Scf00359g00123 Petunia axillaris HOM05D004577 ORTHO05D005062 3.4e-30 136.0 112 81.2
Migut.H01738 Erythranthe guttata HOM05D004577 ORTHO05D005062 9.8e-30 134.4 144 66.7
Hma1.2p1_0193F.1_g083910 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 9.8e-30 134.4 235 49.4
Nitab4.5_0000904g0010 Nicotiana tabacum HOM05D004577 ORTHO05D005062 1.4e-28 130.6 136 67.6
Nitab4.5_0005865g0040 Nicotiana tabacum HOM05D004577 ORTHO05D005062 2.4e-28 129.8 136 67.6
SalBow1G5164 Salvia bowleyana HOM05D004577 ORTHO05D005062 5.4e-28 128.6 176 57.4
DCAR_019165 Daucus carota HOM05D004577 ORTHO05D005062 7.0e-28 128.3 122 77.0
Lsat_1_v5_gn_9_89100 Lactuca sativa HOM05D004577 ORTHO05D005062 2.7e-27 126.3 141 68.1
QL08p002692 Quercus lobata HOM05D004577 ORTHO05D005062 3.5e-27 125.9 125 71.2
CDE02G2114 Ceratophyllum demersum HOM05D000091 ORTHO05D002116 7.8e-27 124.8 100 83.0
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 7.8e-27 124.8 166 57.8
DCAR_015198 Daucus carota HOM05D004577 ORTHO05D005062 1.0e-26 124.4 122 75.4
HanXRQChr13g0408461 Helianthus annuus HOM05D004577 ORTHO05D005062 1.7e-26 123.6 138 68.8
Cfa021890 Carpinus fangiana HOM05D004577 ORTHO05D005062 8.6e-26 121.3 166 57.2
ClCG10G004040 Citrullus lanatus HOM05D004577 ORTHO05D005062 8.6e-26 121.3 173 56.1
Potri.011G163900 Populus trichocarpa HOM05D004577 ORTHO05D005062 8.6e-26 121.3 144 61.1
Sed0027009 Sechium edule HOM05D004577 ORTHO05D005062 8.6e-26 121.3 151 60.3
MELO3C014068.2 Cucumis melo HOM05D004577 ORTHO05D005062 1.1e-25 120.9 136 66.2
CDE01G0461 Ceratophyllum demersum HOM05D004577 ORTHO05D005062 1.5e-25 120.6 119 73.9
CiPaw.11G206900 Carya illinoinensis HOM05D004577 ORTHO05D005062 1.9e-25 120.2 165 57.0
ClCG10G003880 Citrullus lanatus HOM05D004577 ORTHO05D005062 4.3e-25 119.0 159 59.1
ClCG10G004020 Citrullus lanatus HOM05D004577 ORTHO05D005062 4.3e-25 119.0 159 59.1
Eucgr.K00372 Eucalyptus grandis HOM05D004577 ORTHO05D005062 7.3e-25 118.2 112 74.1
HanXRQChr03g0080381 Helianthus annuus HOM05D004577 ORTHO05D005062 2.1e-24 116.7 100 80.0
ECA240G1529 Erigeron canadensis HOM05D000491 ORTHO05D000359 2.8e-24 116.3 148 60.8
MD03G1035300 Malus domestica HOM05D004577 ORTHO05D005062 2.8e-24 116.3 151 55.0
MD11G1037000 Malus domestica HOM05D004577 ORTHO05D005062 2.8e-24 116.3 150 56.0
PSO541G2111 Papaver somniferum HOM05D004577 ORTHO05D005062 3.6e-24 115.9 98 82.7
PSO675G7851 Papaver somniferum HOM05D004577 ORTHO05D005062 3.6e-24 115.9 98 82.7
CiPaw.12G140600 Carya illinoinensis HOM05D004577 ORTHO05D005062 6.1e-24 115.2 135 63.7
PGR004G1013 Punica granatum HOM05D004577 ORTHO05D005062 8.0e-24 114.8 124 67.7
Eucgr.E00269 Eucalyptus grandis HOM05D004577 ORTHO05D005062 1.8e-23 113.6 149 55.0
unitig_8.g4693 Utricularia gibba HOM05D002703 ORTHO05D002921 1.8e-23 113.6 134 66.4
Nitab4.5_0000329g0070 Nicotiana tabacum HOM05D004577 ORTHO05D005062 8.9e-23 111.3 163 54.6
Lalb_Chr16g0391221 Lupinus albus HOM05D004577 ORTHO05D005062 1.2e-22 110.9 107 74.8
HPP92_020499 Vanilla planifolia HOM05D004577 ORTHO05D005062 1.2e-22 110.9 99 81.8
SGA_v2.0_scaffold8G04425 Striga asiatica HOM05D004577 ORTHO05D005062 1.5e-22 110.5 141 62.4
MBI07_g28243_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 2.6e-22 109.8 130 56.2
Glyma.18G074400 Glycine max HOM05D004577 ORTHO05D005062 3.4e-22 109.4 146 62.3
Nitab4.5_0006854g0030 Nicotiana tabacum HOM05D004577 ORTHO05D005062 3.4e-22 109.4 165 57.0
Glyma.08G332600 Glycine max HOM05D004577 ORTHO05D005062 4.4e-22 109.0 136 64.7
THA.LOC104826365 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 5.8e-22 108.6 144 58.3
EL10Ac7g17857 Beta vulgaris HOM05D004577 ORTHO05D005062 7.5e-22 108.2 203 52.2
Aqoxy5G01161 Aquilegia oxysepala HOM05D004577 ORTHO05D005062 9.8e-22 107.8 113 69.9
Phvul.006G059254 Phaseolus vulgaris HOM05D004577 ORTHO05D005062 9.8e-22 107.8 101 79.2
Prupe.6G028300 Prunus persica HOM05D004577 ORTHO05D005062 1.3e-21 107.5 127 60.6
CsaV3_3G003860 Cucumis sativus L. HOM05D004577 ORTHO05D005062 2.9e-21 106.3 101 75.2
Lj6g0018119 Lotus japonicus HOM05D004577 ORTHO05D005062 2.9e-21 106.3 100 78.0
CANSAT11G1943 Cannabis sativa HOM05D004577 ORTHO05D005062 3.7e-21 105.9 105 73.3
Thecc.07G153300 Theobroma cacao HOM05D004577 ORTHO05D005062 4.9e-21 105.5 129 59.7
Gohir.D09G118900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 6.4e-21 105.1 142 52.8
RcHm_v2.0_Chr5g0075591 Rosa chinensis HOM05D004577 ORTHO05D005062 6.4e-21 105.1 128 57.8
ATR0681G062 Amborella trichopoda HOM05D004577 ORTHO05D005062 1.4e-20 104.0 197 49.7
VMungo0540G1151 Vigna mungo HOM05D004577 ORTHO05D005062 1.4e-20 104.0 100 77.0
Ca_12454_v3 Cicer arietinum L. HOM05D004577 ORTHO05D005062 1.2e-19 100.9 131 64.9
Duzib213G0774 Durio zibethinus HOM05D004577 ORTHO05D005062 1.2e-19 100.9 151 50.3
GSVIVG01014742001 Vitis vinifera HOM05D004577 ORTHO05D005062 1.2e-19 100.9 58 86.2
Ciclev10009709m.g Citrus clementina HOM05D004577 ORTHO05D005062 2.7e-19 99.8 189 44.4
Gohir.A01G038700 Gossypium hirsutum HOM05D004577 ORTHO05D005062 4.6e-19 99.0 142 52.1
Hma1.2p1_3473F.1_g336250 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 4.6e-19 99.0 88 77.3
arahy.Tifrunner.gnm1.ann1.DGYJ7N Arachis hypogaea HOM05D004577 ORTHO05D005062 7.8e-19 98.2 106 73.6
arahy.Tifrunner.gnm1.ann1.JWFX0I Arachis hypogaea HOM05D004577 ORTHO05D005062 7.8e-19 98.2 106 73.6
AL1G64510 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 1.0e-18 97.8 101 72.3
AT1G56200 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 1.0e-18 97.8 101 72.3
Carub.0001s4488 Capsella rubella HOM05D004577 ORTHO05D005062 1.0e-18 97.8 101 72.3
FAN25G2651 Fragaria x ananassa HOM05D004577 ORTHO05D005062 1.3e-18 97.4 134 53.0
FAN16G3679 Fragaria x ananassa HOM05D004577 ORTHO05D005062 2.3e-18 96.7 134 53.0
FAN21G3744 Fragaria x ananassa HOM05D004577 ORTHO05D005062 2.3e-18 96.7 134 53.0
EL10Ac2g03806 Beta vulgaris HOM05D004577 ORTHO05D005062 5.0e-18 95.5 97 75.3
FvH4_3g42270 Fragaria vesca HOM05D004577 ORTHO05D005062 6.6e-18 95.1 134 52.2
Duzib187G1448 Durio zibethinus HOM05D004577 ORTHO05D005062 1.1e-17 94.4 153 51.0
FAN11G1489 Fragaria x ananassa HOM05D004577 ORTHO05D005062 2.5e-17 93.2 134 51.5
CARHR045970 Cardamine hirsuta HOM05D004577 ORTHO05D005062 3.3e-17 92.8 103 70.9
Thhalv10011850m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 4.3e-17 92.4 117 63.2
C04p16620 Brassica napus HOM05D004577 ORTHO05D005062 9.5e-17 91.3 99 72.7
BolC4t23212H Brassica oleracea HOM05D004577 ORTHO05D005062 9.5e-17 91.3 99 72.7
Manes.01G021500 Manihot esculenta HOM05D004577 ORTHO05D005062 1.6e-16 90.5 127 54.3
A05p12690 Brassica napus HOM05D004577 ORTHO05D005062 2.1e-16 90.1 119 63.9
Sp1g41840 Schrenkiella parvula HOM05D004577 ORTHO05D005062 2.8e-16 89.7 97 72.2
BraA05t20207Z Brassica rapa HOM05D004577 ORTHO05D005062 3.6e-16 89.4 119 63.9
TPR.G17935 Trifolium pratense HOM05D004577 ORTHO05D005062 3.6e-16 89.4 149 51.7
BcaB02g10507 Brassica carinata HOM05D004577 ORTHO05D005062 4.7e-16 89.0 99 71.7
TWI38G1007 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 1.1e-15 87.8 120 58.3
Medtr3g461020 Medicago truncatula HOM05D004577 ORTHO05D005062 1.8e-15 87.0 105 69.5
Psat5g166440 Pisum sativum HOM05D004577 ORTHO05D005062 2.3e-15 86.7 150 56.0
TWI39G1131 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 4.0e-15 85.9 120 56.7
unitig_0.g986 Utricularia gibba HOM05D004577 ORTHO05D005062 5.2e-15 85.5 133 54.9
Manes.05G118000 Manihot esculenta HOM05D004577 ORTHO05D005062 8.9e-15 84.7 106 65.1
AL1G44500 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 4.4e-14 82.4 187 42.8
Sp1g26310 Schrenkiella parvula HOM05D004577 ORTHO05D005062 7.5e-14 81.6 136 46.3
C03p76790 Brassica napus HOM05D004577 ORTHO05D005062 2.2e-13 80.1 106 51.9
Atru.chr1.1924 Acer truncatum HOM05D004577 ORTHO05D005062 2.9e-13 79.7 128 51.6
C07p15110 Brassica napus HOM05D004577 ORTHO05D005062 2.9e-13 79.7 86 64.0
BolC7t42015H Brassica oleracea HOM05D004577 ORTHO05D005062 2.9e-13 79.7 86 64.0
BcaB03g13825 Brassica carinata HOM05D004577 ORTHO05D005062 3.7e-13 79.3 86 64.0
BcaNung05263 Brassica carinata HOM05D004577 ORTHO05D005062 3.7e-13 79.3 92 60.9
A07p09910 Brassica napus HOM05D004577 ORTHO05D005062 3.7e-13 79.3 86 64.0
QL08p055193 Quercus lobata HOM05D004577 ORTHO05D005062 8.3e-13 78.2 122 57.4
BcaC01g00196 Brassica carinata HOM05D004577 ORTHO05D005062 1.1e-12 77.8 107 52.3
A08p24420 Brassica napus HOM05D004577 ORTHO05D005062 1.1e-12 77.8 87 60.9
BolC3t19933H Brassica oleracea HOM05D004577 ORTHO05D005062 1.1e-12 77.8 107 52.3
BraA08t34397Z Brassica rapa HOM05D004577 ORTHO05D005062 1.1e-12 77.8 87 60.9
THA.LOC104798603 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 1.9e-12 77.0 99 60.6
Thhalv10008915m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 3.2e-12 76.3 88 67.0
AT1G30475 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 7.0e-12 75.1 86 68.6
HPP92_011618 Vanilla planifolia HOM05D004577 ORTHO05D005062 1.2e-11 74.3 91 62.6
BraA07t28780Z Brassica rapa HOM05D004577 ORTHO05D005062 4.6e-11 72.4 95 57.9
Dinv26646 Davidia involucrata HOM05D004577 ORTHO05D005062 6.0e-11 72.0 101 56.4
CARHR029880 Cardamine hirsuta HOM05D004577 ORTHO05D005062 1.3e-10 70.9 92 64.1
Gorai.002G035900 Gossypium raimondii HOM05D004577 ORTHO05D005062 1.3e-10 70.9 142 45.1
Cfa001670 Carpinus fangiana HOM05D004577 ORTHO05D005062 1.7e-10 70.5 105 59.0
Carub.0001s2869 Capsella rubella HOM05D004577 ORTHO05D005062 3.0e-10 69.7 120 53.3
Nitab4.5_0010352g0020 Nicotiana tabacum HOM05D004577 ORTHO05D005062 3.9e-10 69.3 162 45.1
Gorai.N025400 Gossypium raimondii HOM05D004577 ORTHO05D005062 5.0e-10 68.9 79 63.3
Gorai.008G093100 Gossypium raimondii HOM05D004577 ORTHO05D005062 1.5e-09 67.4 67 67.2
Aa31LG10G50 Aethionema arabicum HOM05D004577 ORTHO05D005062 2.5e-09 66.6 67 71.6
Gorai.008G148200 Gossypium raimondii HOM05D004577 ORTHO05D005062 3.3e-09 66.2 67 67.2
CiPaw.01G270900 Carya illinoinensis HOM05D004577 ORTHO05D005062 5.6e-09 65.5 116 54.3
Gohir.A04G049900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 1.2e-08 64.3 85 49.4
Haze_16864 Corylus avellana HOM05D004577 ORTHO05D005062 1.6e-08 63.9 105 58.1
Mapoly0050s0087 Marchantia polymorpha HOM05D034204 ORTHO05D005062 1.6e-08 63.9 167 41.3
TPR.G2686 Trifolium pratense HOM05D011393 ORTHO05D013493 3.6e-08 62.8 105 53.3
Lalb_Chr03g0040851 Lupinus albus HOM05D011393 ORTHO05D013493 3.1e-07 59.7 116 45.7
Gorai.009G401800 Gossypium raimondii HOM05D004577 ORTHO05D005062 5.2e-07 58.9 67 55.2
Mapoly0031s0147 Marchantia polymorpha HOM05D034204 ORTHO05D005062 8.9e-07 58.2 153 42.5
Gohir.D08G183166 Gossypium hirsutum HOM05D004577 ORTHO05D005062 1.2e-06 57.8 67 58.2
Psat2g090480 Pisum sativum HOM05D011393 ORTHO05D013493 2.6e-06 56.6 59 59.3
AagrBONN_evm.TU.Sc2ySwM_228.3972 Anthoceros agrestis HOM05D004577 ORTHO05D005062 3.4e-06 56.2 100 52.0
arahy.Tifrunner.gnm1.ann1.8LZ2EL Arachis hypogaea HOM05D011393 ORTHO05D013493 5.8e-06 55.5 102 48.0
arahy.Tifrunner.gnm1.ann1.GG3KEQ Arachis hypogaea HOM05D011393 ORTHO05D013493 5.8e-06 55.5 93 50.5


User provided reference genes

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