Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030855 Camellia sinensis var. sinensis HOM05D006050 ORTHO05D007457 2.4e-43 178.3 85 100.0
CSS0036908 Camellia sinensis var. sinensis HOM05D006050 ORTHO05D007457 2.3e-41 171.8 85 97.6
GSVIVG01021436001 Vitis vinifera HOM05D006050 ORTHO05D007457 4.3e-16 87.8 50 76.0
Dinv30732 Davidia involucrata HOM05D006050 ORTHO05D007457 5.7e-16 87.4 46 82.6
Nitab4.5_0009607g0030 Nicotiana tabacum HOM05D006050 ORTHO05D007457 5.7e-16 87.4 46 87.0
Solyc02g070560.3 Solanum lycopersicum HOM05D006050 ORTHO05D007457 9.7e-16 86.7 46 87.0
Nitab4.5_0002275g0100 Nicotiana tabacum HOM05D006050 ORTHO05D007457 1.6e-15 85.9 46 84.8
CAN.G650.1 Capsicum annuum HOM05D006050 ORTHO05D007457 3.7e-15 84.7 46 82.6
Peaxi162Scf00170g00718 Petunia axillaris HOM05D006050 ORTHO05D007457 8.2e-15 83.6 46 80.4
PGSC0003DMG401021159 Solanum tuberosum HOM05D006050 ORTHO05D007457 8.2e-15 83.6 45 86.7
MD05G1284800 Malus domestica HOM05D006050 ORTHO05D007457 2.4e-14 82.0 45 82.2
Hma1.2p1_0286F.1_g114100 Hydrangea macrophylla HOM05D006050 ORTHO05D007457 5.3e-14 80.9 46 78.3
vmacro04186 Vaccinium macrocarpon HOM05D006050 ORTHO05D007457 9.0e-14 80.1 45 77.8
Actinidia19520 Actinidia chinensis HOM05D006050 ORTHO05D007457 1.2e-13 79.7 45 80.0
Aqoxy4G00089 Aquilegia oxysepala HOM05D006050 ORTHO05D007457 1.5e-13 79.3 51 72.5
Gohir.A05G149000 Gossypium hirsutum HOM05D006050 ORTHO05D007457 2.0e-13 79.0 46 78.3
Gohir.D05G151500 Gossypium hirsutum HOM05D006050 ORTHO05D007457 2.0e-13 79.0 46 78.3
Gorai.009G155500 Gossypium raimondii HOM05D006050 ORTHO05D007457 2.0e-13 79.0 46 78.3
Rhsim13G0194500 Rhododendron simsii HOM05D006050 ORTHO05D007457 2.0e-13 79.0 45 77.8
Duzib192G0778 Durio zibethinus HOM05D006050 ORTHO05D007457 2.6e-13 78.6 56 66.1
TAR627G0203 Trochodendron aralioides HOM05D006050 ORTHO05D007457 2.6e-13 78.6 45 73.3
HanXRQChr02g0047351 Helianthus annuus HOM05D006050 ORTHO05D007457 3.4e-13 78.2 46 73.9
FvH4_3g05720 Fragaria vesca HOM05D006050 ORTHO05D007457 5.9e-13 77.4 45 75.6
FAN21G0460 Fragaria x ananassa HOM05D006050 ORTHO05D007457 5.9e-13 77.4 45 75.6
FAN25G0090 Fragaria x ananassa HOM05D006050 ORTHO05D007457 5.9e-13 77.4 45 75.6
MD10G1263200 Malus domestica HOM05D006050 ORTHO05D007457 5.9e-13 77.4 45 77.8
Lj2C306G12 Lonicera japonica HOM05D006050 ORTHO05D007457 7.7e-13 77.0 45 75.6
Nn3g20737 Nelumbo nucifera HOM05D006050 ORTHO05D007457 7.7e-13 77.0 46 73.9
RcHm_v2.0_Chr5g0013951 Rosa chinensis HOM05D006050 ORTHO05D007457 7.7e-13 77.0 45 73.3
Cc09_g09460 Coffea canephora HOM05D006050 ORTHO05D007457 1.0e-12 76.6 45 73.3
COL.COLO4_31088 Corchorus olitorius HOM05D006050 ORTHO05D007457 1.3e-12 76.3 45 77.8
Atru.chr10.1253 Acer truncatum HOM05D006050 ORTHO05D007457 1.7e-12 75.9 47 72.3
TWI73G0574 Tripterygium wilfordii HOM05D006050 ORTHO05D007457 1.7e-12 75.9 46 76.1
Haze_05583 Corylus avellana HOM05D006050 ORTHO05D007457 2.2e-12 75.5 45 75.6
Duzib235G1544 Durio zibethinus HOM05D006050 ORTHO05D007457 3.8e-12 74.7 46 73.9
Manes.17G069500 Manihot esculenta HOM05D006050 ORTHO05D007457 3.8e-12 74.7 46 69.6
Thecc.06G151800 Theobroma cacao HOM05D006050 ORTHO05D007457 3.8e-12 74.7 46 71.7
Sabra11G0067500 Salix brachista HOM05D006050 ORTHO05D007457 6.5e-12 73.9 58 62.1
ClCG03G007090 Citrullus lanatus HOM05D006050 ORTHO05D007457 8.5e-12 73.6 45 71.1
Migut.M00918 Erythranthe guttata HOM05D006050 ORTHO05D007457 1.1e-11 73.2 45 71.1
Potri.011G080600 Populus trichocarpa HOM05D006050 ORTHO05D007457 1.1e-11 73.2 45 75.6
Gorai.011G043000 Gossypium raimondii HOM05D006050 ORTHO05D007457 3.2e-11 71.6 45 66.7
Sabra11G0069700 Salix brachista HOM05D006050 ORTHO05D007457 4.2e-11 71.2 45 71.1
MBI10_g02216_MAGBIO Magnolia biondii HOM05D006050 ORTHO05D007457 5.5e-11 70.9 45 73.3
PGR083G2192 Punica granatum HOM05D006050 ORTHO05D007457 5.5e-11 70.9 45 68.9
QL05p058532 Quercus lobata HOM05D006050 ORTHO05D007457 5.5e-11 70.9 45 66.7
CiPaw.09G124900 Carya illinoinensis HOM05D006050 ORTHO05D007457 7.2e-11 70.5 45 66.7
Oeu052380.1 Olea europaea HOM05D006050 ORTHO05D007457 9.4e-11 70.1 45 66.7
PSO017G0250 Papaver somniferum HOM05D006050 ORTHO05D007457 1.2e-10 69.7 46 67.4
SEGI_20862 Sequoiadendron giganteum HOM05D006050 ORTHO05D007457 1.2e-10 69.7 45 68.9
Ciclev10017950m.g Citrus clementina HOM05D006050 ORTHO05D007457 2.1e-10 68.9 42 73.8
PSO170G3783 Papaver somniferum HOM05D006050 ORTHO05D007457 7.9e-10 67.0 46 65.2
CsaV3_1G032660 Cucumis sativus L. HOM05D006050 ORTHO05D007457 1.8e-09 65.9 45 62.2
HPP92_021321 Vanilla planifolia HOM05D006050 ORTHO05D007457 3.0e-09 65.1 41 65.9
Sed0022060 Sechium edule HOM05D006050 ORTHO05D007457 5.1e-09 64.3 42 66.7
AagrBONN_evm.TU.Sc2ySwM_228.2617 Anthoceros agrestis HOM05D006050 ORTHO05D007457 6.7e-09 63.9 45 64.4
SGA_v2.0_scaffold1G00164 Striga asiatica HOM05D006050 ORTHO05D007457 6.7e-09 63.9 44 63.6
Sc05g0006350 Simmondsia chinensis HOM05D006050 ORTHO05D007457 8.8e-09 63.5 47 59.6
ECA248G2274 Erigeron canadensis HOM05D006050 ORTHO05D007457 1.1e-08 63.2 46 60.9
THA.LOC104812850 Tarenaya hassleriana HOM05D006050 ORTHO05D007457 1.1e-08 63.2 45 60.0
Eucgr.D00300 Eucalyptus grandis HOM05D006050 ORTHO05D007457 5.7e-08 60.8 45 62.2
SMO239G0146 Selaginella moellendorffii HOM05D006050 ORTHO05D007457 7.4e-08 60.5 45 62.2
PRCOL_00000982 Prasinoderma coloniale HOM05D006050 ORTHO05D007457 9.7e-08 60.1 45 60.0
BcaNung05669 Brassica carinata HOM05D006050 ORTHO05D007457 2.2e-07 58.9 45 55.6
A03p51180 Brassica napus HOM05D006050 ORTHO05D007457 2.2e-07 58.9 45 55.6
C07p49580 Brassica napus HOM05D006050 ORTHO05D007457 2.2e-07 58.9 45 55.6
BolC7t45462H Brassica oleracea HOM05D006050 ORTHO05D007457 2.2e-07 58.9 45 55.6
BraA03t14200Z Brassica rapa HOM05D006050 ORTHO05D007457 2.2e-07 58.9 45 55.6
AL7G36120 Arabidopsis lyrata HOM05D006050 ORTHO05D007457 3.7e-07 58.2 45 55.6
AT4G18270 Arabidopsis thaliana HOM05D006050 ORTHO05D007457 4.8e-07 57.8 45 55.6
Thhalv10025036m.g Eutrema salsugineum HOM05D006050 ORTHO05D007457 6.3e-07 57.4 45 53.3
Sp7g15790 Schrenkiella parvula HOM05D006050 ORTHO05D007457 6.3e-07 57.4 45 53.3
Carub.0007s2301 Capsella rubella HOM05D006050 ORTHO05D007457 8.2e-07 57.0 45 53.3
CBR_g3965 Chara braunii HOM05D006050 ORTHO05D007457 1.4e-06 56.2 47 57.4


User provided reference genes

Program Settings