Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030843 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 4.0e-199 698.0 369 100.0
vmacro20300 Vaccinium macrocarpon HOM05D006146 ORTHO05D007924 2.2e-101 373.2 452 51.8
Dinv16910 Davidia involucrata HOM05D006146 ORTHO05D007924 1.6e-99 367.1 437 52.9
Rhsim05G0219200 Rhododendron simsii HOM05D006146 ORTHO05D007924 2.1e-99 366.7 436 51.6
CSS0000590 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 9.7e-97 357.8 435 52.2
CSS0012094 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 9.7e-97 357.8 435 52.2
Dinv13137 Davidia involucrata HOM05D006146 ORTHO05D007924 2.7e-94 349.7 426 50.7
Cfa017174 Carpinus fangiana HOM05D006146 ORTHO05D007924 3.0e-90 336.3 438 48.9
Gohir.A04G093600 Gossypium hirsutum HOM05D006146 ORTHO05D007924 5.7e-89 332.0 450 46.2
Gorai.012G116800 Gossypium raimondii HOM05D006146 ORTHO05D007924 6.3e-88 328.6 450 45.8
TAR636G3413 Trochodendron aralioides HOM05D006146 ORTHO05D007924 1.4e-87 327.4 431 48.5
Thecc.05G012100 Theobroma cacao HOM05D006146 ORTHO05D007924 2.4e-87 326.6 436 47.7
QL07p034872 Quercus lobata HOM05D006146 ORTHO05D007924 1.7e-85 320.5 431 47.8
CiPaw.09G211700 Carya illinoinensis HOM05D006146 ORTHO05D007924 2.3e-85 320.1 448 46.9
Actinidia11568 Actinidia chinensis HOM05D006146 ORTHO05D007924 2.9e-85 319.7 387 53.0
Lj2C71G10 Lonicera japonica HOM05D003030 ORTHO05D003610 2.9e-85 319.7 439 46.7
Cc06_g01080 Coffea canephora HOM05D006146 ORTHO05D007924 9.5e-84 314.7 437 46.9
RcHm_v2.0_Chr3g0462541 Rosa chinensis HOM05D006146 ORTHO05D007924 9.5e-84 314.7 436 45.2
Nn2g10908 Nelumbo nucifera HOM05D006146 ORTHO05D007924 4.7e-83 312.4 431 45.5
MD00G1062300 Malus domestica HOM05D006146 ORTHO05D007924 1.0e-82 311.2 433 46.2
Gohir.A09G166500 Gossypium hirsutum HOM05D006146 ORTHO05D007924 1.8e-82 310.5 436 46.1
Prupe.6G280600 Prunus persica HOM05D006146 ORTHO05D007924 2.3e-82 310.1 440 47.3
CSS0015893 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 4.0e-82 309.3 348 55.7
Gohir.D09G162100 Gossypium hirsutum HOM05D006146 ORTHO05D007924 4.0e-82 309.3 436 45.4
Gorai.006G183800 Gossypium raimondii HOM05D006146 ORTHO05D007924 4.0e-82 309.3 436 45.6
Oeu042663.2 Olea europaea HOM05D006146 ORTHO05D007924 8.9e-82 308.1 436 45.9
Hma1.2p1_0362F.1_g136590 Hydrangea macrophylla HOM05D006146 ORTHO05D007924 2.6e-81 306.6 276 62.7
ClCG10G022330 Citrullus lanatus HOM05D006146 ORTHO05D007924 7.5e-81 305.1 433 43.4
COL.COLO4_14502 Corchorus olitorius HOM05D006146 ORTHO05D007924 7.5e-81 305.1 340 52.9
GSVIVG01003939001 Vitis vinifera HOM05D006146 ORTHO05D007924 1.7e-80 303.9 367 48.8
EL10Ac5g12530 Beta vulgaris HOM05D006146 ORTHO05D007924 3.7e-80 302.8 439 44.4
Haze_21031 Corylus avellana HOM05D006146 ORTHO05D007924 4.9e-80 302.4 411 47.2
Lj1g0005300 Lotus japonicus HOM05D006146 ORTHO05D007924 4.9e-80 302.4 450 44.2
Peaxi162Scf01132g00127 Petunia axillaris HOM05D006146 ORTHO05D007924 6.3e-80 302.0 451 44.6
Hma1.2p1_0362F.1_g136580 Hydrangea macrophylla HOM05D006146 ORTHO05D007924 8.3e-80 301.6 289 59.9
Potri.016G120000 Populus trichocarpa HOM05D006146 ORTHO05D007924 1.1e-79 301.2 439 45.8
PGSC0003DMG400006271 Solanum tuberosum HOM05D006146 ORTHO05D007924 3.2e-79 299.7 448 44.0
CAN.G133.15 Capsicum annuum HOM05D006146 ORTHO05D007924 5.4e-79 298.9 450 44.2
MD12G1172300 Malus domestica HOM05D006146 ORTHO05D007924 1.2e-78 297.7 436 45.0
Eucgr.A00545 Eucalyptus grandis HOM05D006146 ORTHO05D007924 1.6e-78 297.4 444 43.2
Solyc09g005120.3 Solanum lycopersicum HOM05D006146 ORTHO05D007924 1.6e-78 297.4 438 44.3
Manes.08G094300 Manihot esculenta HOM05D006146 ORTHO05D007924 3.5e-78 296.2 415 45.8
TWI53G1621 Tripterygium wilfordii HOM05D006146 ORTHO05D007924 4.5e-78 295.8 447 42.7
Ciclev10011366m.g Citrus clementina HOM05D006146 ORTHO05D007924 5.9e-78 295.4 433 44.3
Nitab4.5_0003654g0010 Nicotiana tabacum HOM05D006146 ORTHO05D007924 5.9e-78 295.4 437 44.4
Nitab4.5_0000195g0240 Nicotiana tabacum HOM05D006146 ORTHO05D007924 7.8e-78 295.0 437 44.6
Sopen09g001100 Solanum pennellii HOM05D006146 ORTHO05D007924 2.3e-77 293.5 438 44.1
Aqoxy4G02469 Aquilegia oxysepala HOM05D006146 ORTHO05D007924 2.9e-77 293.1 437 42.8
Hund14889 Selenicereus undatus HOM05D006146 ORTHO05D007924 2.9e-77 293.1 455 44.6
CSS0039643 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 8.6e-77 291.6 376 50.5
Medtr7g069480 Medicago truncatula HOM05D006146 ORTHO05D007924 1.1e-76 291.2 431 44.1
Sed0026013 Sechium edule HOM05D006146 ORTHO05D007924 1.9e-76 290.4 436 43.3
MSTRG.5562 Avicennia marina HOM05D006146 ORTHO05D007924 4.3e-76 289.3 436 43.1
Glyma.18G204000 Glycine max HOM05D006146 ORTHO05D007924 5.6e-76 288.9 436 44.0
CANSAT35G1531 Cannabis sativa HOM05D006146 ORTHO05D007924 1.6e-75 287.3 436 45.4
MELO3C009146.2 Cucumis melo HOM05D006146 ORTHO05D007924 2.8e-75 286.6 434 42.4
Eucgr.A00544 Eucalyptus grandis HOM05D006146 ORTHO05D007924 2.8e-75 286.6 431 43.4
AUR62030469 Chenopodium quinoa HOM05D006146 ORTHO05D007924 1.0e-74 284.6 361 46.8
FAN14G4754 Fragaria x ananassa HOM05D006146 ORTHO05D007924 1.4e-74 284.3 436 42.4
CsaV3_3G033560 Cucumis sativus L. HOM05D006146 ORTHO05D007924 1.8e-74 283.9 433 41.6
Glyma.07G152900 Glycine max HOM05D006146 ORTHO05D007924 3.1e-74 283.1 437 43.2
FAN02G2047 Fragaria x ananassa HOM05D006146 ORTHO05D007924 1.2e-73 281.2 436 42.4
FAN05G4820 Fragaria x ananassa HOM05D006146 ORTHO05D007924 2.0e-73 280.4 427 42.4
Atru.chr8.2278 Acer truncatum HOM05D006146 ORTHO05D007924 2.6e-73 280.0 431 42.0
Gohir.D04G132900 Gossypium hirsutum HOM05D006146 ORTHO05D007924 2.6e-73 280.0 394 45.7
ECA236G4528 Erigeron canadensis HOM05D006146 ORTHO05D007924 4.4e-73 279.3 444 43.0
FvH4_6g11110 Fragaria vesca HOM05D006146 ORTHO05D007924 7.5e-73 278.5 436 42.2
Carub.0003s0810 Capsella rubella HOM05D006146 ORTHO05D007924 1.3e-72 277.7 437 41.2
AL3G19990 Arabidopsis lyrata HOM05D006146 ORTHO05D007924 1.7e-72 277.3 437 40.5
SGA_v2.0_scaffold85G26717 Striga asiatica HOM05D006146 ORTHO05D007924 1.7e-72 277.3 438 43.4
Ah.12g058880 Amaranthus hybridus HOM05D006146 ORTHO05D007924 2.9e-72 276.6 481 39.7
Lsat_1_v5_gn_8_100801 Lactuca sativa HOM05D006146 ORTHO05D007924 4.9e-72 275.8 447 42.7
Aa31LG5G18940 Aethionema arabicum HOM05D006146 ORTHO05D007924 6.4e-72 275.4 432 41.4
CSS0011042 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 4.1e-71 272.7 348 52.0
HanXRQChr12g0383181 Helianthus annuus HOM05D006146 ORTHO05D007924 5.4e-71 272.3 366 46.2
Psat3g126240 Pisum sativum HOM05D006146 ORTHO05D007924 5.4e-71 272.3 435 41.4
AT3G08970 Arabidopsis thaliana HOM05D006146 ORTHO05D007924 2.0e-70 270.4 439 41.7
arahy.Tifrunner.gnm1.ann1.S46L09 Arachis hypogaea HOM05D006146 ORTHO05D007924 2.7e-70 270.0 449 42.1
AUR62010446 Chenopodium quinoa HOM05D006146 ORTHO05D007924 3.5e-70 269.6 436 41.3
arahy.Tifrunner.gnm1.ann1.D29HQK Arachis hypogaea HOM05D006146 ORTHO05D007924 4.6e-70 269.2 450 42.0
Lalb_Chr03g0043371 Lupinus albus HOM05D006146 ORTHO05D007924 1.3e-69 267.7 444 41.9
PSO384G0066 Papaver somniferum HOM05D006146 ORTHO05D007924 3.0e-69 266.5 267 56.2
Ca_07664_v3 Cicer arietinum L. HOM05D006146 ORTHO05D007924 3.9e-69 266.2 420 42.6
PGR031G2778 Punica granatum HOM05D006146 ORTHO05D007924 5.0e-69 265.8 359 45.7
Sp3g07390 Schrenkiella parvula HOM05D006146 ORTHO05D007924 5.0e-69 265.8 368 45.4
C05p58910 Brassica napus HOM05D006146 ORTHO05D007924 8.6e-69 265.0 368 44.3
Phvul.008G095600 Phaseolus vulgaris HOM05D006146 ORTHO05D007924 9.5e-68 261.5 447 40.7
SalBow5G2678 Salvia bowleyana HOM05D006146 ORTHO05D007924 1.2e-67 261.2 429 42.0
THA.LOC104816204 Tarenaya hassleriana HOM05D006146 ORTHO05D007924 1.2e-67 261.2 364 44.5
BraA05t22771Z Brassica rapa HOM05D006146 ORTHO05D007924 2.1e-67 260.4 367 42.5
A05p39870 Brassica napus HOM05D006146 ORTHO05D007924 2.8e-67 260.0 367 42.8
Migut.J00133 Erythranthe guttata HOM05D006146 ORTHO05D007924 3.6e-67 259.6 436 41.1
CDE06G0106 Ceratophyllum demersum HOM05D003030 ORTHO05D003610 6.2e-67 258.8 439 40.3
PSO339G2519 Papaver somniferum HOM05D006146 ORTHO05D007924 6.2e-67 258.8 345 46.4
VMungo1383G3422 Vigna mungo HOM05D006146 ORTHO05D007924 8.0e-67 258.5 456 40.1
unitig_578.g15902 Utricularia gibba HOM05D003030 ORTHO05D003610 1.4e-66 257.7 434 40.8
BolC5t34544H Brassica oleracea HOM05D006146 ORTHO05D007924 3.1e-66 256.5 440 39.1
Thhalv10020374m.g Eutrema salsugineum HOM05D006146 ORTHO05D007924 4.0e-66 256.1 437 40.7
Sc22g0002570 Simmondsia chinensis HOM05D006146 ORTHO05D007924 4.0e-66 256.1 445 40.7
CARHR083310 Cardamine hirsuta HOM05D006146 ORTHO05D007924 8.9e-66 255.0 423 41.4
MBI03_g05510_MAGBIO Magnolia biondii HOM05D006146 ORTHO05D007924 6.4e-64 248.8 312 46.8
Glyma.16G098700 Glycine max HOM05D006146 ORTHO05D007924 5.4e-63 245.7 394 42.6
TPR.G35447 Trifolium pratense HOM05D006146 ORTHO05D007924 2.1e-62 243.8 363 43.0
HPP92_025101 Vanilla planifolia HOM05D006146 ORTHO05D007924 8.6e-61 238.4 429 35.7
FAN09G2516 Fragaria x ananassa HOM05D006146 ORTHO05D007924 7.3e-60 235.3 214 59.3
Cpa.g.sc120.50 Carica papaya HOM05D006146 ORTHO05D007924 1.4e-58 231.1 215 59.5
BcaC05g29631 Brassica carinata HOM05D006146 ORTHO05D007924 1.8e-58 230.7 387 41.3
ATR0681G078 Amborella trichopoda HOM05D006146 ORTHO05D007924 2.0e-57 227.3 434 37.8
SHI12853 Sapria himalayana HOM05D006146 ORTHO05D007924 2.3e-53 213.8 437 35.9
Hund10972 Selenicereus undatus HOM05D006146 ORTHO05D007924 2.3e-53 213.8 214 55.1
Zm00001eb396940 Zea mays HOM05D006146 ORTHO05D007924 1.6e-51 207.6 455 34.3
CSS0031746 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 2.1e-51 207.2 366 43.4
Os03g0293000 Oryza sativa ssp. japonica HOM05D006146 ORTHO05D007924 4.4e-49 199.5 271 42.1
QL08p015836 Quercus lobata HOM05D006146 ORTHO05D007924 4.4e-49 199.5 261 48.7
SEGI_31782 Sequoiadendron giganteum HOM05D006146 ORTHO05D007924 4.8e-43 179.5 306 36.3
DCAR_015389 Daucus carota HOM05D006146 ORTHO05D007924 9.0e-42 175.3 388 38.9
Sabra16G0115900 Salix brachista HOM05D006146 ORTHO05D007924 6.0e-30 136.0 417 31.7
AagrBONN_evm.TU.Sc2ySwM_228.96 Anthoceros agrestis HOM05D006146 ORTHO05D007924 5.6e-28 129.4 261 34.9
SMO347G0184 Selaginella moellendorffii HOM05D006146 ORTHO05D007924 1.1e-26 125.2 262 32.8
Mapoly0184s0019 Marchantia polymorpha HOM05D006146 ORTHO05D007924 4.0e-26 123.2 249 35.3
Zm00001eb225170 Zea mays HOM05D006146 ORTHO05D007924 4.5e-25 119.8 162 46.3
Zm00001eb032720 Zea mays HOM05D006146 ORTHO05D007924 3.0e-21 107.1 195 37.9
Pp3c20_14730 Physcomitrium patens HOM05D006146 ORTHO05D007924 2.1e-19 100.9 260 30.8
Rhsim01G0279400 Rhododendron simsii HOM05D000036 ORTHO05D005472 3.7e-19 100.1 76 67.1
Thecc.05G011800 Theobroma cacao HOM05D006146 ORTHO05D007924 3.4e-17 93.6 79 60.8
Rhsim05G0215400 Rhododendron simsii HOM05D000003 ORTHO05D000004 3.2e-15 87.0 71 60.6
QL07p034801 Quercus lobata HOM05D006146 ORTHO05D007924 5.7e-12 76.3 296 28.0
Haze_20655 Corylus avellana HOM05D006146 ORTHO05D007924 1.4e-10 71.6 75 58.7
Hund10973 Selenicereus undatus HOM05D006146 ORTHO05D007924 3.1e-10 70.5 227 29.1
CBR_g38983 Chara braunii HOM05D000019 ORTHO05D000048 3.2e-07 60.5 93 44.1
Rhsim05G0219400 Rhododendron simsii HOM05D006146 ORTHO05D007924 5.5e-07 59.7 58 55.2


User provided reference genes

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