Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030830 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 8.4e-82 307.0 158 100.0
arahy.Tifrunner.gnm1.ann1.5ZZ6F4 Arachis hypogaea HOM05D005357 ORTHO05D006354 2.6e-22 109.4 68 79.4
arahy.Tifrunner.gnm1.ann1.H8VZ0K Arachis hypogaea HOM05D005357 ORTHO05D006354 2.6e-22 109.4 68 79.4
Actinidia13789 Actinidia chinensis HOM05D005357 ORTHO05D006354 3.4e-22 109.0 68 79.4
Actinidia29139 Actinidia chinensis HOM05D005357 ORTHO05D006354 3.4e-22 109.0 68 80.9
CANSAT35G1827 Cannabis sativa HOM05D005357 ORTHO05D006354 5.8e-22 108.2 68 79.4
Lj2A78G31 Lonicera japonica HOM05D005357 ORTHO05D006354 5.8e-22 108.2 70 81.4
Duzib106G1773 Durio zibethinus HOM05D005357 ORTHO05D006354 7.5e-22 107.8 68 79.4
vmacro01296 Vaccinium macrocarpon HOM05D005357 ORTHO05D006354 9.8e-22 107.5 70 75.7
Duzib093G0024 Durio zibethinus HOM05D005357 ORTHO05D006354 2.2e-21 106.3 68 77.9
GSVIVG01034021001 Vitis vinifera HOM05D005357 ORTHO05D006354 2.9e-21 105.9 68 79.4
Ciclev10011563m.g Citrus clementina HOM05D005357 ORTHO05D006354 3.7e-21 105.5 68 76.5
PGR031G1436 Punica granatum HOM05D005357 ORTHO05D006354 3.7e-21 105.5 68 76.5
Thecc.05G023500 Theobroma cacao HOM05D005357 ORTHO05D006354 3.7e-21 105.5 68 76.5
Dinv37091 Davidia involucrata HOM05D005357 ORTHO05D006354 4.9e-21 105.1 68 80.9
Duzib128G1243 Durio zibethinus HOM05D005357 ORTHO05D006354 6.4e-21 104.8 69 73.9
Eucgr.B02762 Eucalyptus grandis HOM05D005357 ORTHO05D006354 6.4e-21 104.8 68 77.9
QL07p036221 Quercus lobata HOM05D005357 ORTHO05D006354 6.4e-21 104.8 68 75.0
Medtr7g056183 Medicago truncatula HOM05D005357 ORTHO05D006354 8.3e-21 104.4 68 76.5
TWI74G0304 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 8.3e-21 104.4 68 73.5
ClCG10G021740 Citrullus lanatus HOM05D005357 ORTHO05D006354 1.4e-20 103.6 69 75.4
COL.COLO4_14619 Corchorus olitorius HOM05D005357 ORTHO05D006354 1.4e-20 103.6 68 75.0
CsaV3_3G034230 Cucumis sativus L. HOM05D005357 ORTHO05D006354 1.4e-20 103.6 69 75.4
Lj3g0024478 Lotus japonicus HOM05D005357 ORTHO05D006354 1.4e-20 103.6 68 75.0
RcHm_v2.0_Chr3g0463991 Rosa chinensis HOM05D005357 ORTHO05D006354 1.4e-20 103.6 68 75.0
Sc05g0000650 Simmondsia chinensis HOM05D005357 ORTHO05D006354 1.4e-20 103.6 68 77.9
Atru.chr8.2134 Acer truncatum HOM05D005357 ORTHO05D006354 1.9e-20 103.2 71 76.1
Ca_09168_v3 Cicer arietinum L. HOM05D005357 ORTHO05D006354 1.9e-20 103.2 68 73.5
Glyma.18G195500 Glycine max HOM05D005357 ORTHO05D006354 1.9e-20 103.2 68 75.0
MBI06_g17209_MAGBIO Magnolia biondii HOM05D005357 ORTHO05D006354 1.9e-20 103.2 69 76.8
Sed0007832 Sechium edule HOM05D005357 ORTHO05D006354 1.9e-20 103.2 81 69.1
CiPaw.09G205000 Carya illinoinensis HOM05D005357 ORTHO05D006354 2.4e-20 102.8 68 76.5
Glyma.07G144300 Glycine max HOM05D005357 ORTHO05D006354 2.4e-20 102.8 68 75.0
Gohir.A09G163000 Gossypium hirsutum HOM05D005357 ORTHO05D006354 2.4e-20 102.8 68 76.5
Medtr7g066710 Medicago truncatula HOM05D005357 ORTHO05D006354 2.4e-20 102.8 68 75.0
TPR.G1557 Trifolium pratense HOM05D005357 ORTHO05D006354 3.2e-20 102.4 68 75.0
MELO3C009198.2 Cucumis melo HOM05D005357 ORTHO05D006354 4.1e-20 102.1 69 73.9
Phvul.008G108800 Phaseolus vulgaris HOM05D005357 ORTHO05D006354 4.1e-20 102.1 68 73.5
TWI77G0073 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 4.1e-20 102.1 68 70.6
Gohir.D04G128100 Gossypium hirsutum HOM05D005357 ORTHO05D006354 5.4e-20 101.7 68 73.5
Prupe.6G269500 Prunus persica HOM05D005357 ORTHO05D006354 9.2e-20 100.9 68 70.6
TAR636G3085 Trochodendron aralioides HOM05D005357 ORTHO05D006354 9.2e-20 100.9 68 75.0
Gohir.A04G087700 Gossypium hirsutum HOM05D005357 ORTHO05D006354 1.2e-19 100.5 68 73.5
Cfa017262 Carpinus fangiana HOM05D005357 ORTHO05D006354 1.6e-19 100.1 68 75.0
Hma1.2p1_0703F.1_g206335 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 1.6e-19 100.1 68 77.9
Haze_20938 Corylus avellana HOM05D005357 ORTHO05D006354 2.0e-19 99.8 68 75.0
Gohir.D09G158500 Gossypium hirsutum HOM05D005357 ORTHO05D006354 2.0e-19 99.8 68 73.5
Gorai.006G180200 Gossypium raimondii HOM05D005357 ORTHO05D006354 2.0e-19 99.8 68 73.5
Gorai.012G111100 Gossypium raimondii HOM05D005357 ORTHO05D006354 2.0e-19 99.8 68 72.1
MD12G1159000 Malus domestica HOM05D005357 ORTHO05D006354 2.7e-19 99.4 68 73.5
Lalb_Chr01g0022881 Lupinus albus HOM05D005357 ORTHO05D006354 3.5e-19 99.0 68 73.5
SalBow3G4061 Salvia bowleyana HOM05D005357 ORTHO05D006354 4.6e-19 98.6 68 73.5
Lalb_Chr03g0042941 Lupinus albus HOM05D005357 ORTHO05D006354 6.0e-19 98.2 68 73.5
Nitab4.5_0006254g0010 Nicotiana tabacum HOM05D005357 ORTHO05D006354 6.0e-19 98.2 68 75.0
Cpa.g.sc312.3 Carica papaya HOM05D005357 ORTHO05D006354 7.8e-19 97.8 69 71.0
Peaxi162Scf00141g00133 Petunia axillaris HOM05D005357 ORTHO05D006354 1.0e-18 97.4 68 75.0
EL10As5g23477 Beta vulgaris HOM05D005357 ORTHO05D006354 1.7e-18 96.7 68 73.5
Nitab4.5_0000008g0560 Nicotiana tabacum HOM05D005357 ORTHO05D006354 1.7e-18 96.7 68 73.5
MSTRG.5603 Avicennia marina HOM05D005357 ORTHO05D006354 3.0e-18 95.9 68 72.1
BcaB05g21942 Brassica carinata HOM05D005357 ORTHO05D006354 6.6e-18 94.7 68 67.6
BcaNung02766 Brassica carinata HOM05D005357 ORTHO05D006354 6.6e-18 94.7 68 67.6
Sp6g40520 Schrenkiella parvula HOM05D005357 ORTHO05D006354 6.6e-18 94.7 68 67.6
TAR633G0560 Trochodendron aralioides HOM05D005357 ORTHO05D006354 6.6e-18 94.7 73 69.9
Manes.08G086900 Manihot esculenta HOM05D005357 ORTHO05D006354 1.1e-17 94.0 65 70.8
Hund02920 Selenicereus undatus HOM05D005357 ORTHO05D006354 1.1e-17 94.0 68 72.1
Hund09607 Selenicereus undatus HOM05D005357 ORTHO05D006354 1.1e-17 94.0 68 70.6
THA.LOC104827038 Tarenaya hassleriana HOM05D005357 ORTHO05D006354 1.1e-17 94.0 68 67.6
BcaNung02762 Brassica carinata HOM05D005357 ORTHO05D006354 1.9e-17 93.2 68 66.2
Carub.0006s0073 Capsella rubella HOM05D005357 ORTHO05D006354 1.9e-17 93.2 68 67.6
AL6G11040 Arabidopsis lyrata HOM05D005357 ORTHO05D006354 2.5e-17 92.8 68 66.2
AT5G01160 Arabidopsis thaliana HOM05D005357 ORTHO05D006354 2.5e-17 92.8 68 66.2
Migut.J00234 Erythranthe guttata HOM05D005357 ORTHO05D006354 2.5e-17 92.8 68 69.1
Thhalv10014073m.g Eutrema salsugineum HOM05D005357 ORTHO05D006354 2.5e-17 92.8 68 66.2
SGA_v2.0_scaffold85G26772 Striga asiatica HOM05D005357 ORTHO05D006354 2.5e-17 92.8 68 69.1
Ah.11g049570 Amaranthus hybridus HOM05D005357 ORTHO05D006354 7.3e-17 91.3 68 69.1
CAN.G284.13 Capsicum annuum HOM05D005357 ORTHO05D006354 7.3e-17 91.3 72 70.8
Nn1g02852 Nelumbo nucifera HOM05D005357 ORTHO05D006354 7.3e-17 91.3 69 71.0
DCAR_005589 Daucus carota HOM05D005357 ORTHO05D006354 9.5e-17 90.9 70 68.6
Cc06_g01760 Coffea canephora HOM05D005357 ORTHO05D006354 1.2e-16 90.5 68 73.5
A10p33610 Brassica napus HOM05D005357 ORTHO05D006354 2.1e-16 89.7 68 66.2
CARHR211480 Cardamine hirsuta HOM05D005357 ORTHO05D006354 2.1e-16 89.7 68 64.7
Lsat_1_v5_gn_5_155380 Lactuca sativa HOM05D005357 ORTHO05D006354 2.1e-16 89.7 69 71.0
MD04G1145200 Malus domestica HOM05D005357 ORTHO05D006354 2.8e-16 89.4 65 66.2
PSO384G3148 Papaver somniferum HOM05D005357 ORTHO05D006354 2.8e-16 89.4 68 66.2
PSO585G0030 Papaver somniferum HOM05D005357 ORTHO05D006354 2.8e-16 89.4 68 66.2
SGA_v2.0_scaffold75G24995 Striga asiatica HOM05D005357 ORTHO05D006354 2.8e-16 89.4 68 66.2
Aa31LG1G22800 Aethionema arabicum HOM05D005357 ORTHO05D006354 4.7e-16 88.6 68 63.2
CDE03G0086 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 4.7e-16 88.6 68 66.2
AUR62024704 Chenopodium quinoa HOM05D005357 ORTHO05D006354 4.7e-16 88.6 68 66.2
SHI12776 Sapria himalayana HOM05D005357 ORTHO05D006354 4.7e-16 88.6 78 60.3
AUR62011861 Chenopodium quinoa HOM05D005357 ORTHO05D006354 6.2e-16 88.2 68 66.2
FAN05G3392 Fragaria x ananassa HOM05D005357 ORTHO05D006354 6.2e-16 88.2 68 69.1
C09p74540 Brassica napus HOM05D005357 ORTHO05D006354 8.1e-16 87.8 57 71.9
BolC9t60186H Brassica oleracea HOM05D005357 ORTHO05D006354 8.1e-16 87.8 57 71.9
BraA10t45393Z Brassica rapa HOM05D005357 ORTHO05D006354 8.1e-16 87.8 77 58.4
CDE04G3126 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 8.1e-16 87.8 68 64.7
HanXRQChr13g0406371 Helianthus annuus HOM05D005357 ORTHO05D006354 8.1e-16 87.8 74 64.9
Oeu044369.1 Olea europaea HOM05D005357 ORTHO05D006354 8.1e-16 87.8 67 67.2
Aqoxy1G00739 Aquilegia oxysepala HOM05D005357 ORTHO05D006354 1.1e-15 87.4 69 66.7
Oeu030537.4 Olea europaea HOM05D005357 ORTHO05D006354 1.4e-15 87.0 66 68.2
FvH4_6g12190 Fragaria vesca HOM05D005357 ORTHO05D006354 1.8e-15 86.7 68 67.6
FAN09G0023 Fragaria x ananassa HOM05D005357 ORTHO05D006354 1.8e-15 86.7 68 67.6
FAN14G1666 Fragaria x ananassa HOM05D005357 ORTHO05D006354 1.8e-15 86.7 68 67.6
FAN14G2781 Fragaria x ananassa HOM05D005357 ORTHO05D006354 1.8e-15 86.7 68 67.6
Potri.006G095600 Populus trichocarpa HOM05D005357 ORTHO05D006354 4.0e-15 85.5 50 82.0
FAN02G3235 Fragaria x ananassa HOM05D005357 ORTHO05D006354 6.8e-15 84.7 68 67.6
Sabra06G0073400 Salix brachista HOM05D005357 ORTHO05D006354 8.9e-15 84.3 51 78.4
HanXRQChr13g0397921 Helianthus annuus HOM05D005357 ORTHO05D006354 3.4e-14 82.4 69 62.3
unitig_22.g6590 Utricularia gibba HOM05D005357 ORTHO05D006354 3.4e-14 82.4 68 63.2
HanXRQChr13g0397571 Helianthus annuus HOM05D005357 ORTHO05D006354 5.8e-14 81.6 69 60.9
PGSC0003DMG401020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 1.3e-13 80.5 68 63.2
Sopen09g006960 Solanum pennellii HOM05D005357 ORTHO05D006354 3.7e-13 79.0 68 63.2
Rhsim01G0256700 Rhododendron simsii HOM05D005357 ORTHO05D004574 8.3e-13 77.8 76 57.9
SEGI_31043 Sequoiadendron giganteum HOM05D005357 ORTHO05D006354 5.4e-12 75.1 72 58.3
HPP92_021066 Vanilla planifolia HOM05D005357 ORTHO05D006354 1.6e-11 73.6 71 57.7
ECA248G2096 Erigeron canadensis HOM05D005357 ORTHO05D006354 3.5e-11 72.4 68 61.8
Zm00001eb044800 Zea mays HOM05D005357 ORTHO05D006354 2.3e-10 69.7 89 47.2
Zm00001eb221140 Zea mays HOM05D005357 ORTHO05D006354 3.9e-10 68.9 89 47.2
PGSC0003DMG402020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 1.9e-09 66.6 68 55.9
RcHm_v2.0_Chr3g0492291 Rosa chinensis HOM05D005357 ORTHO05D006354 3.6e-08 62.4 52 63.5
Os10g0494500 Oryza sativa ssp. japonica HOM05D005357 ORTHO05D006354 1.1e-07 60.8 47 63.8


User provided reference genes

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